 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | HSF1,TFAP4,SOX12,PHF1,SLIRP,TBX6,GLI4,CENPT,NOL3,HSF4,GLYR1,THOC6,IRF3,CIRBP,MRM1,SUGP1,DDX56,IMP3,THAP8,TIGD5,MZF1,PARN,DMTF1,TIGD6,TIGD1,CPSF1,RNPS1,DDX51,RPP25,THAP3,CWC15,NFYC,DHX34,HINFP,CPSF4,PPIE,PBX4,ZMAT1,ZNF83,DHX58,RALY,NSUN6,SNRPA,NXF1,SAFB2,THOC1,ZNF18 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | HSF4,MZF1,NOL3,ZNF18,E4F1,ZMAT1,RNPS1,TFAP4,RBM6,PBX4,THAP3,CIRBP | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SMAD1,ATF1,UHMK1,QKI,REST,CSDE1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000262468 | ENST00000573268 | exon_skip_48713 | chr10:34336198-34336243 | -10.19 | -0.2754 | PARD3 | ENST00000374789 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000262468 | ENST00000573268 | exon_skip_445633 | chr5:151110626-151110644 | -7.29 | -0.8100 | ANXA6 | ENST00000354546 | In-frame | | ENSG00000262468 | ENST00000573268 | exon_skip_446770 | chr5:178215275-178215430 | -16.63 | -0.1526 | PHYKPL | ENST00000308158 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000262468 | ENSG00000147789 | ZNF7 | ENSG00000102878 | HSF4 | 5 | CHOL,KIRC,LGG,LUSC,MESO | | ENSG00000262468 | ENSG00000167967 | E4F1 | ENSG00000102878 | HSF4 | 13 | BLCA,BRCA,CHOL,COAD,GBM,KIRC,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,SKCM | | ENSG00000262468 | ENSG00000154957 | ZNF18 | ENSG00000102878 | HSF4 | 7 | CHOL,GBM,KIRC,KIRP,PRAD,THCA,THYM | | ENSG00000262468 | ENSG00000167967 | E4F1 | ENSG00000140939 | NOL3 | 7 | COAD,KIRC,KIRP,LGG,LUAD,PAAD,SARC | | ENSG00000262468 | ENSG00000130254 | SAFB2 | ENSG00000167967 | E4F1 | 5 | CHOL,KIRC,KIRP,LGG,TGCT | | ENSG00000262468 | ENSG00000147789 | ZNF7 | ENSG00000167967 | E4F1 | 5 | CHOL,KIRC,LGG,LUSC,PRAD | | ENSG00000262468 | ENSG00000147789 | ZNF7 | ENSG00000205937 | RNPS1 | 5 | CHOL,KIRC,LGG,LUSC,PRAD | | ENSG00000262468 | ENSG00000167967 | E4F1 | ENSG00000205937 | RNPS1 | 13 | BRCA,CHOL,COAD,GBM,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,PAAD,PRAD,SARC | | ENSG00000262468 | ENSG00000147789 | ZNF7 | ENSG00000090447 | TFAP4 | 5 | CHOL,KIRC,LGG,LUSC,PRAD | | ENSG00000262468 | ENSG00000167967 | E4F1 | ENSG00000090447 | TFAP4 | 9 | BRCA,CHOL,COAD,KIRC,LGG,LUAD,LUSC,PAAD,PRAD | | ENSG00000262468 | ENSG00000167967 | E4F1 | ENSG00000004534 | RBM6 | 5 | CHOL,KIRP,LGG,PRAD,TGCT | | ENSG00000262468 | ENSG00000167967 | E4F1 | ENSG00000041988 | THAP3 | 6 | BRCA,CHOL,KIRC,LIHC,LUAD,SKCM |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000262468.4 | ENST00000573042.1 | 97 | 25 | 315 | | ENSG00000262468.4 | ENST00000571970.4 | 92 | 1315 | 1037 | | ENSG00000262468.4 | ENST00000573268.1 | 95 | 524 | 237 |
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