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lncRNA: ENSG00000262001

Summary for DLGAP1-AS2

Gene summary

Gene information	Ensembl ID	ENSG00000262001
	Gene symbol	DLGAP1-AS2
	Gene name	DLGAP1 antisense RNA 2
	HGNC	28146
	Entrez ID
	Gene type	antisense
	Synonyms	DLGAP1-AS2\|18p11.31
	UniProtAcc

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Structure and expression level for DLGAP1-AS2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000262001	2.301759e+02	1.871944e+00	3.571402e-01	5.241482e+00	1.590000e-07	1.570000e-06	UP	GBM
ENSG00000262001	1.601336e+02	1.711651e+00	3.648955e-01	4.690797e+00	2.720000e-06	1.650000e-05	UP	CHOL
ENSG00000262001	5.144682e+02	1.331073e+00	3.796374e-01	3.506171e+00	4.546040e-04	4.258295e-03	UP	ESCA
ENSG00000262001	4.112476e+02	1.593871e+00	1.852544e-01	8.603690e+00	7.720000e-18	4.440000e-17	UP	LUSC
ENSG00000262001	3.375683e+02	2.220414e+00	1.468965e-01	1.511549e+01	1.280000e-51	1.290000e-49	UP	COAD
ENSG00000262001	3.562293e+02	2.152767e+00	2.146212e-01	1.003054e+01	1.120000e-23	1.350000e-21	UP	STAD
ENSG00000262001	4.133146e+02	2.023759e+00	3.298473e-01	6.135442e+00	8.490000e-10	2.220000e-08	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000262001	4.792537e-01	8.659946e-04	CHOL	1.517295e-03

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lncRNA-Protein interaction for DLGAP1-AS2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000108773	KAT2A	63.88	92.1239	Q92830	Epi	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000147162	OGT	73.79	92.5811	O15294	Epi	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000088305	DNMT3B	54.06	92.4403	Q9UBC3	Epi	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000141456	PELP1	44.4	95.3369	Q8IZL8	Epi	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000116560	SFPQ	39.63	94.1211	P23246	RBP,Epi	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000187531	SIRT7	21.75	91.3006	Q9NRC8	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000135164	DMTF1	71.58	93.0406	Q9Y222	TF	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000099326	MZF1	61.07	93.4731	P28698	TF	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000166432	ZMAT1	29.08	96.0721	Q5H9K5	TF	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000177426	TGIF1	17.45	90.9449	Q15583	TF	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000213928	IRF9	16.17	91.964	Q00978	TF	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000167766	ZNF83	13.24	92.4039	P51522	TF	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000133740	E2F5	12.26	90.8094	Q15329	TF	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000185670	ZBTB3	9.99	94.6415	Q9H5J0	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000163728	TTC14	66.33	91.2174	Q96N46	RBP	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000004534	RBM6	65.96	93.8803	P78332	RBP	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000003756	RBM5	65.96	96.2805	P52756	RBP	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000138035	PNPT1	65.78	91.2896	Q8TCS8	RBP	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000125485	DDX31	59.38	91.7704	Q9H8H2	RBP	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000106344	RBM28	59.17	90.2014	Q9NW13	RBP	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000176102	CSTF3	52.45	92.8786	Q12996	RBP	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000079134	THOC1	51.26	92.3141	Q96FV9	RBP	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000116560	SFPQ	39.63	94.2645	P23246	RBP,Epi	NA
ENSG00000262001	ENST00000572856	DLGAP1-AS2	ENSG00000162231	NXF1	22.1	93.5585	Q9UBU9	RBP	NA

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lncRNA-DNA interaction for DLGAP1-AS2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

SRRT,GPX2,AGAP6,RBM19,WRAP73,SCNM1,ATAT1,GSDMB,RNF149,GABPB2,ARHGEF2,EPOR,GLI4,GTPBP2,RBM39,TRMU,NUP43,SLC26A6,LENG8,TMEM234,MCM7,SH2B1,IRF3,SMYD5,C1orf159,PRR3,MZF1,CHTF18,TMEM44,PPOX,SNF8,WDR53,MAFG,MSTO1,DMTF1,L3HYPDH,PIGL,POMGNT1,NEK3,MLLT6,TAF1D,UNKL,MKS1,MYL12B,C1orf35,CCDC174,KIAA0895L,NDUFAF6,CDK5RAP1,GPCPD1,ATAD3B,TRIM65,MUTYH,RBM28,EIF2B4,DCAF8,MFSD10,EML3,ULK3,CCNL2,ARFGAP1,MIX23,CAPN10,VMP1,LIN37,AP1G2,HESX1,CENATAC,NPEPL1,SNRPA,CLK3,ANKRD10,WDR5B,PTK7,FAM136A,MSANTD2,IFT27,THOC1,PHKG2,PNPT1,TFAP4,DCAF16,RFNG,ACBD6,INTS11,SUPT7L,UGGT2,TP53I13,TAMM41,CENPT,TTC14,CCNT2,PTCD3,MRM1,TAZ,STX10,ANAPC7,GTPBP3,KAT2A,TXNDC12,LTO1,PIDD1,ANKS6,CSTF3,OGT,RCCD1,METAP1D,PLA2G6,CBX3,CSNK1E,TAF1C,CLK2,ZBTB3,RBM25,ENTR1,C1orf131,MYO19,CEBPZOS,POLG2,CCDC137,DHX34,AAAS,CPSF4,CHKB,METTL17,CEP89,SETD6,POLI,CAPN15,METTL23,OSGEP,CLK1,PRPF39,GABPB1,MRNIP,ERMARD,KIAA0753,NASP,RABL2A,ELMOD3,TRIM45,OFD1,E2F5,PCED1A,ACYP1,NQO1,SLC25A29,MIB2,MAPK15,HAUS5,FCHSD1,MTRF1,RAD52,SLC3A2,HDAC7,TMEM69,CFAP298,CNOT11,ZC3H8,HDAC10,HEXIM2,GNL2,NDC80,HSF4,PROSER3,ENOSF1,ANKS3,ARGLU1,PGGHG,TELO2,C3orf62,PAXBP1,LEMD2,RGL3,WSB1,MOGS,MRPS23,FNBP4,C2orf49,AUP1,CCHCR1,INPP5E,POLL,ORMDL1,MIIP,RNF25,RSRP1,PTRH2,NEK8,TIGD1,KLC1,RBM45,HSPBAP1,MICALL2,CRYGS,C12orf73,DDX51,AGER,GPS2,TRIM52,ORC2,NOL12,SPOUT1,CLASRP,SRSF2,C1orf52,PSMG4,DEDD,CDK11A,DDX31,STK36,HMGN1,TRAF4,TTC32,LTB4R,TIA1,ANKLE2,ZMAT1,ZNF83,ATG4B,GOLGA8B,TMUB2,UTP6,FADS3,ACP6,NXF1,IFT20,ABCD4,GOLGA8A,FAM229A,PAM16,PELP1,C2orf68,FBXL8,MRE11,TGIF1,AP4M1,PSMG2,NEIL1,SETD4,NDUFAF7,RBM6,GIGYF1,KRTCAP2,CARD19,NOP2,FAM193B,ZMYND19,PNKP,DUSP28,TMEM134,XPO1,NAT9,LIPT1,RBM5,CZIB,METTL4,SAP30BP,LUC7L,COA5,HEXD,UCKL1,C14orf93,VCPKMT,PARP6,DPH7,PSME3IP1,CCDC24,TRA2A,WDR27,P3H1,MAPKAPK5,UBXN11,EME2,ORC6,KHDC4,NR2C1,CROCC,CERS5,PDCD2L,CRTC2,AMY2B,CCDC14,APBB3,CYTH2,PNISR,RCC2,SFPQ,WDR74,ANKRD13D,SLC7A11,CCDC57,TEPSIN,PSMD12,SIRT7,TRIT1,NADSYN1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DPH7,GTF2H4,MSTO1,PDCD2L,MOGS,TRIM16L,ZMAT1,DTX2,HAUS5,ORC2,DGCR8,EFHC1,ACP6,OXLD1,TGIF1,STX16,EPOR,CRTC2,RBM5,TRIM52,MLLT6,C9orf114,RGL3,SETD6,ZNF83,CEP89,ENOSF1,MIIP,C14orf79,MZF1,SLC25A14,FAM160B2,MCM7,PAXBP1,KIAA0907,TMEM44,CEBPZOS,SETD4,ACCS,CCDC137,C2orf68,FNBP4,WSB1,IFT81,MAGEF1,FBXL8,SCNM1,ABCD4,CYTH2,MTRF1,RGL2,NEK8,SENP5,RBM6,NUP85,UGGT2,ZMYND19,AP4B1,MDM4,TAZ

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for DLGAP1-AS2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

IQGAP2,CALM3

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000262001	ENST00000572856	exon_skip_382458	chr3:38131595-38131638	-12.20	-0.3050	ACAA1	ENST00000333167	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for DLGAP1-AS2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000262001	ENSG00000062716	VMP1	ACC,CHOL,ESCA,GBM,KIRP,LGG,PAAD,READ,SARC,SKCM	GBM
ENSG00000262001	ENSG00000112655	PTK7	ACC,CHOL,STAD,THCA,UCS	CHOL,STAD
ENSG00000262001	ENSG00000116584	ARHGEF2	ACC,CHOL,KIRP,PAAD,THYM,UCS	CHOL
ENSG00000262001	ENSG00000125459	MSTO1	ACC,CHOL,KIRP,LGG,THCA	CHOL
ENSG00000262001	ENSG00000133316	WDR74	ACC,CHOL,READ,TGCT,THCA	READ
ENSG00000262001	ENSG00000134253	TRIM45	ACC,CHOL,GBM,KIRP,LGG,UCEC,UCS	CHOL
ENSG00000262001	ENSG00000142330	CAPN10	ACC,BLCA,CHOL,KIRP,OV,THCA,UCS	CHOL
ENSG00000262001	ENSG00000143633	C1orf131	ACC,CHOL,KIRP,LUSC,PAAD	LUSC
ENSG00000262001	ENSG00000145014	TMEM44	ACC,CHOL,KIRP,PAAD,THCA,THYM	CHOL
ENSG00000262001	ENSG00000162836	ACP6	ACC,CHOL,GBM,KIRP,LAML,LGG,PAAD	GBM
ENSG00000262001	ENSG00000163156	SCNM1	ACC,CHOL,KIRP,LGG,TGCT,THCA	CHOL
ENSG00000262001	ENSG00000165138	ANKS6	ACC,CHOL,KIRP,PAAD,READ,THCA	CHOL,READ
ENSG00000262001	ENSG00000165689	ENTR1	ACC,CHOL,KIRP,LGG,READ,TGCT,THCA	READ
ENSG00000262001	ENSG00000165724	ZMYND19	ACC,CHOL,KIRP,READ,TGCT,THCA	READ
ENSG00000262001	ENSG00000166508	MCM7	ACC,CHOL,KIRP,SARC,THCA	CHOL
ENSG00000262001	ENSG00000172432	GTPBP2	ACC,CHOL,KIRP,LGG,PAAD,THCA	CHOL
ENSG00000262001	ENSG00000181019	NQO1	ACC,CESC,CHOL,ESCA,LUSC	CHOL,LUSC
ENSG00000262001	ENSG00000181610	MRPS23	ACC,CHOL,COAD,STAD,TGCT	COAD
ENSG00000262001	ENSG00000213923	CSNK1E	ACC,CHOL,KIRP,LUAD,PAAD,STAD,THCA	CHOL
ENSG00000262001	ENSG00000273899	NOL12	ACC,CHOL,KIRP,PAAD,THCA	CHOL
ENSG00000262001	ENSG00000275023	MLLT6	ACC,CHOL,KIRP,LAML,THCA	CHOL
ENSG00000262001	ENSG00000100416	TRMU	BLCA,CHOL,KIRP,LGG,LUAD,READ,STAD,THCA	READ
ENSG00000262001	ENSG00000108773	KAT2A	BLCA,CHOL,COAD,ESCA,GBM,KIRP,LGG,LUSC,PAAD,READ,THCA,THYM	COAD,LUSC,READ
ENSG00000262001	ENSG00000168096	ANKS3	BLCA,CHOL,KIRP,LGG,THCA,UCEC,UCS	CHOL
ENSG00000262001	ENSG00000197948	FCHSD1	BLCA,CHOL,GBM,KIRP,LGG,THCA	CHOL
ENSG00000262001	ENSG00000213139	CRYGS	BLCA,CHOL,KIRP,LAML,UCEC	CHOL
ENSG00000262001	ENSG00000215440	NPEPL1	BLCA,CHOL,ESCA,GBM,KIRP,LGG,THCA,THYM,UCEC,UCS	CHOL
ENSG00000262001	ENSG00000151012	SLC7A11	CESC,CHOL,LUAD,LUSC,PAAD	CHOL,LUSC
ENSG00000262001	ENSG00000011143	MKS1	CHOL,GBM,KIRP,LAML,LGG	GBM
ENSG00000262001	ENSG00000035141	FAM136A	CHOL,COAD,KIRP,LGG,LUAD,LUSC,PAAD,READ,TGCT	LUSC
ENSG00000262001	ENSG00000046651	OFD1	CHOL,GBM,KIRP,LGG,PAAD,READ,TGCT,THCA	CHOL
ENSG00000262001	ENSG00000061273	HDAC7	CHOL,KIRP,LGG,THCA,UCS	CHOL
ENSG00000262001	ENSG00000080986	NDC80	CHOL,LUSC,PAAD,READ,STAD	CHOL,LUSC,STAD
ENSG00000262001	ENSG00000091651	ORC6	CHOL,COAD,LUSC,PAAD,READ	CHOL,COAD,LUSC,READ
ENSG00000262001	ENSG00000101391	CDK5RAP1	CHOL,COAD,KIRP,SARC,STAD,TGCT	COAD
ENSG00000262001	ENSG00000103037	SETD6	CHOL,GBM,KIRP,LAML,LUSC,READ	READ
ENSG00000262001	ENSG00000105443	CYTH2	CHOL,ESCA,KIRP,THCA,UCEC	CHOL
ENSG00000262001	ENSG00000109736	MFSD10	CHOL,GBM,KIRP,LGG,THCA	CHOL
ENSG00000262001	ENSG00000119640	ACYP1	CHOL,COAD,GBM,KIRP,LAML,LGG,READ,STAD	CHOL
ENSG00000262001	ENSG00000121289	CEP89	CHOL,KIRP,LAML,LGG,READ,UCS	CHOL
ENSG00000262001	ENSG00000122565	CBX3	CHOL,COAD,KIRP,STAD,THCA	COAD
ENSG00000262001	ENSG00000126249	PDCD2L	CHOL,LGG,READ,TGCT,UCS	READ
ENSG00000262001	ENSG00000127586	CHTF18	CHOL,KIRP,PAAD,TGCT,THCA	CHOL
ENSG00000262001	ENSG00000132680	KHDC4	CHOL,GBM,KIRP,LAML,LGG,LUAD,PAAD,READ,STAD,THCA	CHOL,READ
ENSG00000262001	ENSG00000135632	SMYD5	CHOL,COAD,LUSC,STAD,THCA,UCS	CHOL,COAD
ENSG00000262001	ENSG00000137343	ATAT1	CHOL,KIRP,OV,PAAD,STAD,THCA,THYM	CHOL
ENSG00000262001	ENSG00000139624	CERS5	CHOL,KIRP,READ,STAD,THCA	CHOL
ENSG00000262001	ENSG00000141569	TRIM65	CHOL,KIRP,LAML,PAAD,READ	CHOL,READ
ENSG00000262001	ENSG00000142102	PGGHG	CHOL,GBM,KIRP,LGG,PAAD,THCA,UCEC,UCS	GBM
ENSG00000262001	ENSG00000144134	RABL2A	CHOL,ESCA,GBM,KIRP,LAML,LGG,OV,PAAD,THCA,UCS	CHOL
ENSG00000262001	ENSG00000144559	TAMM41	CHOL,COAD,KIRP,READ,THCA	READ
ENSG00000262001	ENSG00000149716	LTO1	CHOL,GBM,KIRP,LGG,READ,THCA	CHOL
ENSG00000262001	ENSG00000158062	UBXN11	CHOL,GBM,KIRP,LGG,SARC,THCA	CHOL
ENSG00000262001	ENSG00000160124	MIX23	CHOL,GBM,KIRP,LUAD,LUSC,TGCT,THCA	GBM,LUSC
ENSG00000262001	ENSG00000163257	DCAF16	CHOL,KIRP,LAML,LUAD,READ	CHOL
ENSG00000262001	ENSG00000163482	STK36	CHOL,GBM,KIRP,LAML,LGG,OV,STAD,THCA,UCEC	CHOL,GBM
ENSG00000262001	ENSG00000164877	MICALL2	CHOL,GBM,KIRP,PAAD,SARC,THCA	CHOL
ENSG00000262001	ENSG00000166012	TAF1D	CHOL,COAD,GBM,KIRP,PAAD,READ,STAD,THCA	CHOL,COAD,READ
ENSG00000262001	ENSG00000166965	RCCD1	CHOL,GBM,KIRP,LUAD,LUSC,PAAD,READ	LUSC
ENSG00000262001	ENSG00000167543	TP53I13	CHOL,ESCA,GBM,KIRP,LGG,LUSC,THCA	GBM
ENSG00000262001	ENSG00000167595	PROSER3	CHOL,KIRP,LGG,READ,UCS	CHOL
ENSG00000262001	ENSG00000167615	LENG8	CHOL,GBM,KIRP,LGG,THCA	CHOL
ENSG00000262001	ENSG00000168887	C2orf68	CHOL,GBM,KIRP,LAML,PAAD,STAD,THCA,UCS	GBM
ENSG00000262001	ENSG00000175265	GOLGA8A	CHOL,GBM,KIRP,LAML,STAD,THCA,UCEC	STAD
ENSG00000262001	ENSG00000175455	CCDC14	CHOL,GBM,KIRP,OV,PAAD,STAD,THCA	STAD
ENSG00000262001	ENSG00000179051	RCC2	CHOL,KIRP,LGG,PAAD,TGCT,THCA	CHOL
ENSG00000262001	ENSG00000181085	MAPK15	CHOL,KIRP,PAAD,STAD,THCA	CHOL,STAD
ENSG00000262001	ENSG00000184465	WDR27	CHOL,GBM,KIRP,LAML,LGG,READ,STAD,THCA	READ
ENSG00000262001	ENSG00000185798	WDR53	CHOL,COAD,KIRP,LGG,LUSC,SARC	LUSC
ENSG00000262001	ENSG00000185917	SETD4	CHOL,GBM,KIRP,LUSC,OV,PAAD,THCA,UCS	CHOL
ENSG00000262001	ENSG00000186166	CENATAC	CHOL,GBM,KIRP,LGG,READ,STAD,THCA,UCEC,UCS	READ
ENSG00000262001	ENSG00000196981	WDR5B	CHOL,COAD,GBM,KIRP,LAML,LUSC,STAD	GBM
ENSG00000262001	ENSG00000197119	SLC25A29	CHOL,KIRP,LGG,OV,TGCT	CHOL
ENSG00000262001	ENSG00000198920	KIAA0753	CHOL,GBM,KIRP,LAML,LGG,THCA	CHOL
ENSG00000262001	ENSG00000204149	AGAP6	CHOL,GBM,KIRP,LGG,OV,PAAD,READ,STAD,THCA,UCEC	READ
ENSG00000262001	ENSG00000204305	AGER	CHOL,GBM,KIRP,LGG,OV,THCA,UCEC,UCS	CHOL,GBM
ENSG00000262001	ENSG00000205517	RGL3	CHOL,GBM,KIRP,OV,THCA,UCS	CHOL
ENSG00000262001	ENSG00000221838	AP4M1	CHOL,GBM,KIRP,LGG,THCA	CHOL,GBM
ENSG00000262001	ENSG00000230124	ACBD6	CHOL,ESCA,KIRP,LAML,LUSC	CHOL
ENSG00000262001	ENSG00000249115	HAUS5	CHOL,LGG,READ,THCA,UCS	READ
ENSG00000262001	ENSG00000278259	MYO19	CHOL,GBM,KIRP,LGG,PAAD,READ	CHOL
ENSG00000262001	ENSG00000126790	L3HYPDH	GBM,KIRP,LAML,LGG,LUSC,READ	GBM

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000262001	ENSG00000166432	ZMAT1	ENSG00000148399	DPH7	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000167766	ZNF83	ENSG00000148399	DPH7	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000166432	ZMAT1	ENSG00000213780	GTF2H4	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000167766	ZNF83	ENSG00000213780	GTF2H4	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000167766	ZNF83	ENSG00000166432	ZMAT1	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000167766	ZNF83	ENSG00000096093	EFHC1	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000135164	DMTF1	ENSG00000124222	STX16	5	CHOL,GBM,KIRP,LAML,LGG
ENSG00000262001	ENSG00000166432	ZMAT1	ENSG00000124222	STX16	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000167766	ZNF83	ENSG00000124222	STX16	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000166432	ZMAT1	ENSG00000167766	ZNF83	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000135164	DMTF1	ENSG00000132199	ENOSF1	5	CHOL,KIRP,LAML,LGG,OV
ENSG00000262001	ENSG00000099326	MZF1	ENSG00000158863	FAM160B2	5	BLCA,CHOL,KIRP,LGG,THCA
ENSG00000262001	ENSG00000135164	DMTF1	ENSG00000132680	KHDC4	5	CHOL,GBM,KIRP,LAML,LGG
ENSG00000262001	ENSG00000167766	ZNF83	ENSG00000132680	KHDC4	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000177426	TGIF1	ENSG00000132680	KHDC4	6	CHOL,KIRP,LGG,PAAD,READ,THCA
ENSG00000262001	ENSG00000177426	TGIF1	ENSG00000145014	TMEM44	5	ACC,CHOL,KIRP,PAAD,THCA
ENSG00000262001	ENSG00000167766	ZNF83	ENSG00000237441	RGL2	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000262001	ENSG00000166432	ZMAT1	ENSG00000102125	TAZ	5	CHOL,GBM,KIRP,LGG,THCA

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000262001	ENST00000573177	IQGAP2	ENSG00000145703	ENST00000502745	-0.1264	471	-	CHOL,ESCA,LUSC,COAD,READ
ENSG00000262001	ENST00000573177	CALM3	ENSG00000160014	ENST00000598871	-0.3396	1224	-	GBM
ENSG00000262001	ENST00000573177	CALM3	ENSG00000160014	ENST00000594523	-0.7720	437	-	GBM
ENSG00000262001	ENST00000572856	IQGAP2	ENSG00000145703	ENST00000502745	-0.1400	812	-	CHOL,ESCA,LUSC,COAD,READ
ENSG00000262001	ENST00000572856	IQGAP2	ENSG00000145703	ENST00000513534	-0.1024	915	-	CHOL,ESCA,LUSC,COAD,READ
ENSG00000262001	ENST00000572856	CALM3	ENSG00000160014	ENST00000391918	-0.1333	1934	-	GBM
ENSG00000262001	ENST00000572856	CALM3	ENSG00000160014	ENST00000597743	-0.1005	805	-	GBM
ENSG00000262001	ENST00000572856	CALM3	ENSG00000160014	ENST00000598871	-0.4459	934	-	GBM
ENSG00000262001	ENST00000572856	CALM3	ENSG00000160014	ENST00000594523	-0.7331	1914	-	GBM

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000262001.1	ENST00000573177.1	35	31	138
ENSG00000262001.1	ENST00000572856.1	113	672	1013

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential