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lncRNA: ENSG00000261824

Summary for LINC00662

Gene summary

Gene information	Ensembl ID	ENSG00000261824
	Gene symbol	LINC00662
	Gene name	long intergenic non-protein coding RNA 662
	HGNC	27122
	Entrez ID	148189
	Gene type	lincRNA
	Synonyms	LINC00662\|19q11
	UniProtAcc

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Structure and expression level for LINC00662

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000261824	7.572326e+02	1.245519e+00	2.943700e-01	4.231135e+00	2.330000e-05	5.369450e-04	UP	PCPG

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for LINC00662

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000101126	ADNP	68.72	94.6039	Q9H2P0	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000101126	ADNP	84.91	95.041	Q9H2P0	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000036549	ZZZ3	75.69	95.3625	Q8IYH5	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000272333	KMT2B	50.49	94.6775	Q9UMN6	TF,Epi	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000025293	PHF20	115.97	92.681	Q9BVI0	TF,Epi	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000025293	PHF20	96.85	93.4243	Q9BVI0	TF,Epi	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000162601	MYSM1	72.15	90.0997	Q5VVJ2	TF,Epi	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000116539	ASH1L	67.17	95.7325	Q9NR48	TF,Epi	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000084093	REST	55.45	95.9299	Q13127	TF,Epi	ChIP-seq
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000025293	PHF20	119.12	96.728	Q9BVI0	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000116539	ASH1L	79.08	96.7	Q9NR48	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000084093	REST	65.22	96.0563	Q13127	TF,Epi	ChIP-seq
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000084093	REST	49.72	91.7841	Q13127	TF,Epi	ChIP-seq
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000115966	ATF2	8.82	92.8627	P15336	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000025293	PHF20	115.97	91.9843	Q9BVI0	TF,Epi	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000025293	PHF20	96.85	95.8531	Q9BVI0	TF,Epi	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000162601	MYSM1	72.15	91.6056	Q5VVJ2	TF,Epi	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000101126	ADNP	68.72	94.9708	Q9H2P0	TF,Epi	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000116539	ASH1L	67.17	96.1015	Q9NR48	TF,Epi	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000167232	ZNF91	64.94	92.1519	Q05481	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000125482	TTF1	61.86	91.8108	Q15361	TF	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000198521	ZNF43	61.44	92.1308	P17038	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000005889	ZFX	57.25	90.6963	P17010	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000084093	REST	55.45	96.1419	Q13127	TF,Epi	ChIP-seq
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000167232	ZNF91	54.5	95.8388	Q05481	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000198521	ZNF43	51.08	93.7192	P17038	TF	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000198040	ZNF84	48.94	92.2289	P51523	TF	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000198538	ZNF28	48.5	91.0816	P17035	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000126804	ZBTB1	45.8	94.0541	Q9Y2K1	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000124459	ZNF45	42.41	93.4014	Q02386	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000147789	ZNF7	42.29	91.3216	P17097	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000198538	ZNF28	41.46	94.0701	P17035	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000146587	RBAK	41.24	91.9918	Q9NYW8	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000198040	ZNF84	40.68	93.3612	P51523	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000164631	ZNF12	28.91	92.1999	P17014	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000186272	ZNF17	28.89	93.9517	P17021	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000062194	GPBP1	25.34	90.0209	Q86WP2	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000105708	ZNF14	22.3	93.2209	P17017	TF	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000175691	ZNF77	17.94	90.3479	Q15935	TF	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000256223	ZNF10	16.61	92.2715	P21506	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000168661	ZNF30	15.0	92.9451	P17039	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000120784	ZFP30	10.53	91.2221	Q9Y2G7	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000256223	ZNF10	10.34	94.1176	P21506	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000177463	NR2C2	9.9	90.3784	P49116	TF	ChIP-seq
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000146757	ZNF92	9.49	90.6539	Q03936	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000181007	ZFP82	9.35	92.5342	Q8N141	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000105750	ZNF85	6.48	93.4353	Q03923	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000175691	ZNF77	5.75	94.0347	Q15935	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000278129	ZNF8	5.28	92.0544	P17098	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000144161	ZC3H8	5.1	92.0142	Q8N5P1	TF,RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000146757	ZNF92	4.76	92.7885	Q03936	TF	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000085274	MYNN	2.97	91.9936	Q9NPC7	TF	ChIP-seq
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000275111	ZNF2	2.36	91.9229	Q9BSG1	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000025293	PHF20	119.12	96.6859	Q9BVI0	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000101126	ADNP	84.91	94.9548	Q9H2P0	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000196867	ZFP28	82.26	94.3131	Q8NHY6	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000116539	ASH1L	79.08	96.6286	Q9NR48	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000105127	AKAP8	78.48	96.0505	O43823	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000036549	ZZZ3	75.69	95.2594	Q8IYH5	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000125482	TTF1	73.57	95.3742	Q15361	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000005889	ZFX	65.55	95.3766	P17010	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000084093	REST	65.22	96.3171	Q13127	TF,Epi	ChIP-seq
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000167232	ZNF91	62.68	96.7729	Q05481	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000198521	ZNF43	60.18	95.2713	P17038	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000117000	RLF	59.0	97.2016	Q13129	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000124459	ZNF45	58.35	92.3573	Q02386	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000101544	ADNP2	55.56	90.7552	Q6IQ32	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000198538	ZNF28	54.88	92.5001	P17035	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000146587	RBAK	54.57	90.106	Q9NYW8	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000196670	ZFP62	53.88	95.347	Q8NB50	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000170448	NFXL1	50.66	92.8063	Q6ZNB6	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000272333	KMT2B	50.49	94.7871	Q9UMN6	TF,Epi	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000167232	ZNF91	49.25	93.4125	Q05481	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000126804	ZBTB1	48.1	95.3817	Q9Y2K1	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000198040	ZNF84	46.8	95.6467	P51523	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000198521	ZNF43	46.29	93.0979	P17038	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000147789	ZNF7	46.12	93.7308	P17097	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000147789	ZNF7	44.05	92.4181	P17097	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000196670	ZFP62	43.57	90.6118	Q8NB50	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000146587	RBAK	42.79	94.3767	Q9NYW8	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000124459	ZNF45	41.36	95.1548	Q02386	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000198538	ZNF28	41.33	95.6525	P17035	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000186272	ZNF17	37.13	90.6665	P17021	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000198040	ZNF84	36.21	92.2574	P51523	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000169981	ZNF35	33.43	90.9153	P13682	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000164631	ZNF12	30.41	94.4756	P17014	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000169981	ZNF35	30.28	91.9092	P13682	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000105708	ZNF14	30.17	91.9855	P17017	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000186272	ZNF17	29.11	95.7932	P17021	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000198815	FOXJ3	28.62	94.5397	Q9UPW0	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000181007	ZFP82	28.38	90.5687	Q8N141	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000142065	ZFP14	27.12	93.9303	Q9HCL3	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000171649	ZIK1	26.91	93.1946	Q3SY52	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000062194	GPBP1	26.78	94.756	Q86WP2	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000181007	ZFP82	25.95	94.399	Q8N141	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000168661	ZNF30	25.72	95.4814	P17039	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000105708	ZNF14	23.66	94.063	P17017	TF	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000175691	ZNF77	20.17	90.6232	Q15935	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000120784	ZFP30	19.7	94.4717	Q9Y2G7	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000175691	ZNF77	19.19	93.858	Q15935	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000166526	ZNF3	15.06	93.3068	P17036	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000184517	ZFP1	14.65	92.2175	Q6P2D0	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000256223	ZNF10	12.18	93.8205	P21506	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000141646	SMAD4	10.64	90.8721	Q13485	TF	ChIP-seq
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000146757	ZNF92	9.16	90.0275	Q03936	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000278129	ZNF8	8.93	94.8576	P17098	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000115966	ATF2	8.82	93.1803	P15336	TF,Epi	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000146757	ZNF92	7.44	95.0048	Q03936	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000105750	ZNF85	7.08	95.6047	Q03923	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000275111	ZNF2	6.7	94.4248	Q9BSG1	TF	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000144161	ZC3H8	5.94	92.8063	Q8N5P1	TF,RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000085274	MYNN	4.2	93.5616	Q9NPC7	TF	ChIP-seq

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000056097	ZFR	121.8	95.2809	Q96KR1	RBP	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000056097	ZFR	97.06	93.2291	Q96KR1	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000198000	NOL8	83.5	96.9864	Q76FK4	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000106344	RBM28	79.18	96.0945	Q9NW13	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000091009	RBM27	75.56	90.8735	Q9P2N5	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000137776	SLTM	75.42	97.2523	Q9NWH9	RBP	ENCODE,eCLIP
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000139746	RBM26	74.34	94.1316	Q5T8P6	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000125676	THOC2	67.36	96.4271	Q8NI27	RBP	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000198000	NOL8	65.26	92.5981	Q76FK4	RBP	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000106344	RBM28	62.01	93.6599	Q9NW13	RBP	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000137776	SLTM	60.96	95.411	Q9NWH9	RBP	ENCODE,eCLIP
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000085872	CHERP	58.91	94.8132	Q8IWX8	RBP	NA
ENSG00000261824	ENST00000561521	LINC00662	ENSG00000091009	RBM27	58.21	90.7654	Q9P2N5	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000135870	RC3H1	55.31	95.8494	Q5TC82	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000134644	PUM1	48.04	95.444	Q14671	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000145907	G3BP1	38.84	90.581	Q13283	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000184863	RBM33	21.71	93.6565	Q96EV2	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000100461	RBM23	17.5	94.0868	Q86U06	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000147274	RBMX	16.23	94.2761	P38159	RBP	NA
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000107164	FUBP3	8.79	92.1081	Q96I24	RBP	ENCODE
ENSG00000261824	ENST00000586954	LINC00662	ENSG00000144161	ZC3H8	5.94	93.2745	Q8N5P1	TF,RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000056097	ZFR	97.35	90.2664	Q96KR1	RBP	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000136381	IREB2	78.09	91.4287	P48200	RBP	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000091009	RBM27	76.65	94.1768	Q9P2N5	RBP	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000139746	RBM26	73.59	94.4924	Q5T8P6	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000198000	NOL8	67.84	94.9288	Q76FK4	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000106344	RBM28	66.32	94.0745	Q9NW13	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000136381	IREB2	65.28	91.2928	P48200	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000137776	SLTM	64.7	91.177	Q9NWH9	RBP	ENCODE,eCLIP
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000091009	RBM27	64.11	94.7585	Q9P2N5	RBP	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000085872	CHERP	63.8	92.5516	Q8IWX8	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000139746	RBM26	61.22	95.7508	Q5T8P6	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000085872	CHERP	53.83	95.7697	Q8IWX8	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000129317	PUS7L	52.98	90.2057	Q9H0K6	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000135870	RC3H1	45.52	90.9384	Q5TC82	RBP	NA
ENSG00000261824	ENST00000590523	LINC00662	ENSG00000100461	RBM23	11.47	90.6417	Q86U06	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000072756	TRNT1	7.32	90.9323	Q96Q11	RBP	NA
ENSG00000261824	ENST00000586248	LINC00662	ENSG00000144161	ZC3H8	5.1	91.6041	Q8N5P1	TF,RBP	NA

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lncRNA-DNA interaction for LINC00662

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

CNOT4,ZNF30,PUS7,CEBPZ,E2F6,CWC22,GPBP1,FOXJ3,TRNT1,PUM1,PNO1,ZZZ3,ZNF14,RBM48,ZC3H8,NOL8,TTF1,ZNF10,RBM41,RBM4,PUM2,XPO1,CREB1,RC3H1,ELF2,PCBP2,SMAD4,ZFP82,ZFP62,ZNF43,MYSM1,ZFP28,RBM23,SP3,AKAP8,ZNF17,ZNF2,ZNF91,KAT7,PAIP1,ZNF28,ZNF84,ZNF45,RBMX,AGO2,U2AF2,LSM1,KRR1,VEZF1,RBM26,ZFP1,ZIK1,NFXL1,RBM27,ADNP,NCBP1,AGO3,ZNF77,RBM18,PUS7L,DDX52,ASH1L,RBM28,DDX31,GABPA,ZFP30,SP4,MYNN,KMT2B,LIN54,THAP9,THOC2,ZFP14,TSN,ZFR,ZBTB6,RNPC3,ZNF3,ZFX,THAP6,ZNF8,RBM33,NAF1,E2F5,NR2C2,ATF2,CSTF1,PNPT1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

SP4,CNOT4,ZFP82,E2F5,KMT2B,ZFP14,THAP6,AGO2,XPO1,PUS7,RBM41,E2F6,ZFP62,ASH1L,DDX52,U2AF2,ZFR,ZFX,CPSF6,ZNF14,GPBP1,ZNF85,DDX31,THOC2,TERF1,FOXJ3,REST,MYNN,ZNF3,DDX46,RC3H1,PUM2,ADNP,ZFP30,VEZF1,PCBP2,LIN54,ELF2,ZNF28

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for LINC00662

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SPI1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for LINC00662

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000105866	SP4	6	ACC,KICH,LUAD,PCPG,THCA,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000105866	SP4	6	ACC,KICH,LUAD,PCPG,THCA,UCEC
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000105866	SP4	5	ACC,KICH,LUAD,PCPG,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000105866	SP4	5	KICH,LUAD,PCPG,THCA,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000105866	SP4	5	ACC,LUAD,PCPG,THCA,UCEC
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000105866	SP4	5	ACC,KICH,LUAD,PCPG,THCA
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000105866	SP4	6	ACC,KICH,LUAD,PCPG,THCA,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000080802	CNOT4	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000080802	CNOT4	6	BRCA,KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000080802	CNOT4	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000080802	CNOT4	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000080802	CNOT4	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000080802	CNOT4	5	BRCA,KICH,LUAD,THCA,THYM
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000181007	ZFP82	5	BRCA,GBM,LAML,LGG,THCA
ENSG00000261824	ENSG00000025293	PHF20	ENSG00000142065	ZFP14	5	LAML,LGG,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000036549	ZZZ3	ENSG00000142065	ZFP14	5	KICH,LAML,LGG,LUAD,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000142065	ZFP14	9	ACC,GBM,KICH,LAML,LGG,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000105708	ZNF14	ENSG00000142065	ZFP14	5	ACC,GBM,KICH,LAML,PCPG
ENSG00000261824	ENSG00000105750	ZNF85	ENSG00000142065	ZFP14	6	ACC,GBM,KICH,LAML,LUAD,SARC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000142065	ZFP14	9	ACC,GBM,KICH,LAML,LGG,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000124459	ZNF45	ENSG00000142065	ZFP14	6	ACC,KICH,LAML,LGG,SARC,THYM
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000142065	ZFP14	6	ACC,KICH,LAML,LUAD,PCPG,THYM
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000142065	ZFP14	7	KICH,LAML,LGG,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000166526	ZNF3	ENSG00000142065	ZFP14	5	ACC,GBM,LGG,PCPG,SARC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000142065	ZFP14	8	ACC,GBM,LAML,LGG,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000168661	ZNF30	ENSG00000142065	ZFP14	6	ACC,GBM,LAML,LGG,PCPG,THYM
ENSG00000261824	ENSG00000171649	ZIK1	ENSG00000142065	ZFP14	6	ACC,GBM,KICH,LAML,LGG,PCPG
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000142065	ZFP14	7	ACC,KICH,LAML,LGG,LUAD,PCPG,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000142065	ZFP14	7	ACC,KICH,LAML,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000198521	ZNF43	ENSG00000142065	ZFP14	6	ACC,GBM,KICH,LAML,LUAD,UCEC
ENSG00000261824	ENSG00000278129	ZNF8	ENSG00000142065	ZFP14	6	KICH,LAML,LGG,LUAD,PCPG,UCEC
ENSG00000261824	ENSG00000036549	ZZZ3	ENSG00000174796	THAP6	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000174796	THAP6	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000174796	THAP6	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000174796	THAP6	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000174796	THAP6	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000174796	THAP6	5	KICH,LAML,LUAD,THCA,THYM
ENSG00000261824	ENSG00000278129	ZNF8	ENSG00000123908	AGO2	5	BRCA,KICH,LGG,SKCM,UCEC
ENSG00000261824	ENSG00000025293	PHF20	ENSG00000082898	XPO1	5	KICH,LAML,LGG,LUAD,UCEC
ENSG00000261824	ENSG00000036549	ZZZ3	ENSG00000082898	XPO1	5	KICH,LAML,LGG,LUAD,SKCM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000082898	XPO1	6	KICH,LAML,LGG,LUAD,SKCM,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000082898	XPO1	5	KICH,LAML,LGG,LUAD,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000082898	XPO1	5	LAML,LGG,LUAD,SKCM,UCEC
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000082898	XPO1	5	KICH,LAML,LUAD,SKCM,UCEC
ENSG00000261824	ENSG00000278129	ZNF8	ENSG00000082898	XPO1	5	LAML,LGG,LUAD,SKCM,UCEC
ENSG00000261824	ENSG00000125482	TTF1	ENSG00000091127	PUS7	5	ACC,KICH,LAML,LGG,THCA
ENSG00000261824	ENSG00000025293	PHF20	ENSG00000089682	RBM41	5	KICH,LAML,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000089682	RBM41	5	KICH,LAML,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000089682	RBM41	5	KICH,LAML,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000089682	RBM41	5	KICH,LAML,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000089682	RBM41	5	KICH,LAML,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000089682	RBM41	5	KICH,LAML,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000089682	RBM41	5	KICH,LAML,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000169016	E2F6	6	GBM,LGG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000169016	E2F6	5	GBM,LGG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000169016	E2F6	5	LGG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000062194	GPBP1	ENSG00000196670	ZFP62	5	KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000196670	ZFP62	6	KICH,LAML,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000196670	ZFP62	6	KICH,LAML,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000196670	ZFP62	5	KICH,LAML,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000196670	ZFP62	5	KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000196670	ZFP62	6	KICH,LAML,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000196670	ZFP62	6	KICH,LAML,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000196670	ZFP62	5	KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000196670	ZFP62	5	LAML,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000116539	ASH1L	6	LAML,LUAD,PCPG,SKCM,THYM,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000116539	ASH1L	5	LAML,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000116539	ASH1L	5	LAML,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000116539	ASH1L	5	LAML,LUAD,PCPG,SKCM,THYM
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000116539	ASH1L	6	LAML,LUAD,PCPG,SKCM,THYM,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000116539	ASH1L	5	LAML,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000116539	ASH1L	5	LAML,LUAD,PCPG,SKCM,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000116539	ASH1L	6	LAML,LUAD,PCPG,SKCM,THYM,UCEC
ENSG00000261824	ENSG00000278129	ZNF8	ENSG00000116539	ASH1L	5	LAML,LUAD,PCPG,SKCM,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000063244	U2AF2	5	ACC,GBM,KICH,LGG,PCPG
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000063244	U2AF2	5	ACC,GBM,KICH,LGG,PCPG
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000063244	U2AF2	5	ACC,GBM,KICH,LGG,PCPG
ENSG00000261824	ENSG00000166526	ZNF3	ENSG00000063244	U2AF2	5	ACC,GBM,KICH,LGG,PCPG
ENSG00000261824	ENSG00000171649	ZIK1	ENSG00000063244	U2AF2	5	ACC,GBM,KICH,LGG,PCPG
ENSG00000261824	ENSG00000062194	GPBP1	ENSG00000056097	ZFR	5	KICH,PCPG,SKCM,THCA,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000056097	ZFR	8	ACC,GBM,KICH,PCPG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000105708	ZNF14	ENSG00000056097	ZFR	5	ACC,GBM,KICH,PCPG,THCA
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000056097	ZFR	7	ACC,GBM,KICH,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000124459	ZNF45	ENSG00000056097	ZFR	5	ACC,KICH,SKCM,THCA,THYM
ENSG00000261824	ENSG00000141646	SMAD4	ENSG00000056097	ZFR	5	ACC,GBM,KICH,SKCM,THCA
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000056097	ZFR	6	ACC,GBM,KICH,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000056097	ZFR	5	ACC,PCPG,SKCM,THCA,THYM
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000056097	ZFR	5	PCPG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000056097	ZFR	6	ACC,GBM,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000168661	ZNF30	ENSG00000056097	ZFR	5	ACC,GBM,PCPG,SKCM,THYM
ENSG00000261824	ENSG00000171649	ZIK1	ENSG00000056097	ZFR	5	ACC,GBM,KICH,PCPG,THCA
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000056097	ZFR	6	ACC,KICH,PCPG,SKCM,THCA,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000056097	ZFR	7	ACC,KICH,PCPG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000005889	ZFX	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000005889	ZFX	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000146757	ZNF92	ENSG00000005889	ZFX	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000005889	ZFX	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000005889	ZFX	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000005889	ZFX	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000036549	ZZZ3	ENSG00000111605	CPSF6	5	KICH,LAML,LGG,LUAD,SKCM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000111605	CPSF6	8	ACC,KICH,LAML,LGG,LUAD,PCPG,SKCM,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000111605	CPSF6	7	ACC,KICH,LAML,LGG,LUAD,PCPG,UCEC
ENSG00000261824	ENSG00000124459	ZNF45	ENSG00000111605	CPSF6	5	ACC,KICH,LAML,LGG,SKCM
ENSG00000261824	ENSG00000141646	SMAD4	ENSG00000111605	CPSF6	5	ACC,KICH,LAML,LGG,SKCM
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000111605	CPSF6	7	ACC,KICH,LAML,LGG,LUAD,PCPG,UCEC
ENSG00000261824	ENSG00000144161	ZC3H8	ENSG00000111605	CPSF6	5	ACC,KICH,LAML,LUAD,SKCM
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000111605	CPSF6	6	ACC,KICH,LAML,LUAD,PCPG,SKCM
ENSG00000261824	ENSG00000146757	ZNF92	ENSG00000111605	CPSF6	5	ACC,KICH,LAML,LUAD,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000111605	CPSF6	7	KICH,LAML,LGG,LUAD,PCPG,SKCM,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000111605	CPSF6	7	ACC,KICH,LAML,LGG,LUAD,PCPG,UCEC
ENSG00000261824	ENSG00000170448	NFXL1	ENSG00000111605	CPSF6	5	ACC,KICH,LAML,LUAD,SKCM
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000111605	CPSF6	6	ACC,KICH,LAML,LUAD,PCPG,SKCM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000111605	CPSF6	7	ACC,KICH,LAML,LUAD,PCPG,SKCM,UCEC
ENSG00000261824	ENSG00000198040	ZNF84	ENSG00000111605	CPSF6	5	KICH,LAML,LUAD,PCPG,SKCM
ENSG00000261824	ENSG00000278129	ZNF8	ENSG00000111605	CPSF6	7	KICH,LAML,LGG,LUAD,PCPG,SKCM,UCEC
ENSG00000261824	ENSG00000062194	GPBP1	ENSG00000105708	ZNF14	5	KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000105708	ZNF14	7	ACC,GBM,KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000105750	ZNF85	ENSG00000105708	ZNF14	5	ACC,GBM,KICH,LAML,THCA
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000105708	ZNF14	7	ACC,GBM,KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000124459	ZNF45	ENSG00000105708	ZNF14	5	ACC,KICH,LAML,THCA,THYM
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000105708	ZNF14	6	ACC,GBM,KICH,LAML,PCPG,THYM
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000105708	ZNF14	5	ACC,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000105708	ZNF14	5	KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000105708	ZNF14	6	ACC,GBM,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000168661	ZNF30	ENSG00000105708	ZNF14	6	ACC,GBM,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000171649	ZIK1	ENSG00000105708	ZNF14	6	ACC,GBM,KICH,LAML,PCPG,THCA
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000105708	ZNF14	6	ACC,KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000105708	ZNF14	6	ACC,KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000275111	ZNF2	ENSG00000105708	ZNF14	5	ACC,GBM,KICH,THCA,THYM
ENSG00000261824	ENSG00000036549	ZZZ3	ENSG00000062194	GPBP1	5	KICH,LAML,SKCM,THCA,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000062194	GPBP1	7	KICH,LAML,PCPG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000062194	GPBP1	6	KICH,LAML,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000124459	ZNF45	ENSG00000062194	GPBP1	5	KICH,LAML,SKCM,THCA,THYM
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000062194	GPBP1	5	KICH,LAML,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000062194	GPBP1	6	KICH,LAML,PCPG,SKCM,THCA,THYM
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000062194	GPBP1	7	KICH,LAML,PCPG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000062194	GPBP1	5	LAML,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000062194	GPBP1	6	KICH,LAML,PCPG,SKCM,THCA,THYM
ENSG00000261824	ENSG00000196670	ZFP62	ENSG00000062194	GPBP1	5	KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000062194	GPBP1	7	KICH,LAML,PCPG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000105750	ZNF85	6	GBM,KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000105708	ZNF14	ENSG00000105750	ZNF85	5	ACC,GBM,KICH,LAML,THCA
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000105750	ZNF85	7	ACC,GBM,KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000105750	ZNF85	7	ACC,GBM,KICH,LAML,LUAD,SARC,UCEC
ENSG00000261824	ENSG00000146757	ZNF92	ENSG00000105750	ZNF85	6	ACC,KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000105750	ZNF85	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000105750	ZNF85	7	ACC,GBM,KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000171649	ZIK1	ENSG00000105750	ZNF85	5	ACC,GBM,KICH,LAML,THCA
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000105750	ZNF85	5	ACC,KICH,LAML,LUAD,THCA
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000105750	ZNF85	5	ACC,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000198521	ZNF43	ENSG00000105750	ZNF85	6	ACC,GBM,KICH,LAML,LUAD,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000125485	DDX31	6	ACC,KICH,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000025293	PHF20	ENSG00000125676	THOC2	5	KICH,LAML,LGG,THYM,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000125676	THOC2	5	KICH,LAML,LGG,THYM,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000125676	THOC2	5	KICH,LAML,LGG,THYM,UCEC
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000125676	THOC2	5	KICH,LAML,LGG,THYM,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000125676	THOC2	5	KICH,LAML,LGG,THYM,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000125676	THOC2	5	KICH,LAML,LGG,THYM,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000084093	REST	5	KICH,LAML,LGG,LUAD,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000084093	REST	5	KICH,LAML,LGG,LUAD,UCEC
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000084093	REST	5	KICH,LAML,LGG,LUAD,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000084093	REST	5	KICH,LAML,LGG,LUAD,UCEC
ENSG00000261824	ENSG00000278129	ZNF8	ENSG00000084093	REST	5	KICH,LAML,LGG,LUAD,UCEC
ENSG00000261824	ENSG00000036549	ZZZ3	ENSG00000085274	MYNN	5	KICH,LAML,SKCM,THCA,THYM
ENSG00000261824	ENSG00000062194	GPBP1	ENSG00000085274	MYNN	5	KICH,LAML,SKCM,THCA,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000085274	MYNN	5	KICH,LAML,SKCM,THCA,THYM
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000085274	MYNN	5	GBM,KICH,LAML,THCA,THYM
ENSG00000261824	ENSG00000124459	ZNF45	ENSG00000085274	MYNN	5	KICH,LAML,SKCM,THCA,THYM
ENSG00000261824	ENSG00000141646	SMAD4	ENSG00000085274	MYNN	5	GBM,KICH,LAML,SKCM,THCA
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000085274	MYNN	5	KICH,LAML,SKCM,THCA,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000085274	MYNN	5	KICH,LAML,SKCM,THCA,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000166526	ZNF3	6	ACC,GBM,KICH,LGG,PCPG,THCA
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000166526	ZNF3	5	ACC,GBM,LGG,PCPG,THCA
ENSG00000261824	ENSG00000141646	SMAD4	ENSG00000166526	ZNF3	5	ACC,GBM,KICH,LGG,THCA
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000166526	ZNF3	5	ACC,GBM,LGG,PCPG,SARC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000166526	ZNF3	5	ACC,KICH,LGG,PCPG,THCA
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000145833	DDX46	5	KICH,LAML,LGG,THCA,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000135870	RC3H1	5	LAML,LGG,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000135870	RC3H1	5	LAML,LGG,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000135870	RC3H1	5	LAML,LGG,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000135870	RC3H1	5	LAML,LGG,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000055917	PUM2	5	LAML,LUAD,SKCM,THCA,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000055917	PUM2	5	LAML,LUAD,SKCM,THCA,UCEC
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000055917	PUM2	5	LAML,LUAD,SKCM,THCA,UCEC
ENSG00000261824	ENSG00000005889	ZFX	ENSG00000101126	ADNP	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000025293	PHF20	ENSG00000101126	ADNP	6	KICH,LAML,LGG,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000036549	ZZZ3	ENSG00000101126	ADNP	6	LAML,LGG,LUAD,SKCM,THCA,THYM
ENSG00000261824	ENSG00000062194	GPBP1	ENSG00000101126	ADNP	6	KICH,LAML,PCPG,SKCM,THCA,THYM
ENSG00000261824	ENSG00000105127	AKAP8	ENSG00000101126	ADNP	5	ACC,KICH,LGG,THCA,THYM
ENSG00000261824	ENSG00000105708	ZNF14	ENSG00000101126	ADNP	6	ACC,GBM,KICH,LAML,PCPG,THCA
ENSG00000261824	ENSG00000105750	ZNF85	ENSG00000101126	ADNP	5	GBM,KICH,LAML,LUAD,THCA
ENSG00000261824	ENSG00000116539	ASH1L	ENSG00000101126	ADNP	5	LAML,LUAD,PCPG,SKCM,THYM
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000101126	ADNP	10	ACC,GBM,KICH,LAML,LGG,LUAD,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000124459	ZNF45	ENSG00000101126	ADNP	7	ACC,KICH,LAML,LGG,SKCM,THCA,THYM
ENSG00000261824	ENSG00000125482	TTF1	ENSG00000101126	ADNP	5	ACC,KICH,LAML,LGG,THCA
ENSG00000261824	ENSG00000141646	SMAD4	ENSG00000101126	ADNP	7	ACC,GBM,KICH,LAML,LGG,SKCM,THCA
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000101126	ADNP	9	ACC,GBM,KICH,LAML,LGG,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000144161	ZC3H8	ENSG00000101126	ADNP	5	ACC,LAML,LUAD,SKCM,THCA
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000101126	ADNP	8	ACC,KICH,LAML,LUAD,PCPG,SKCM,THCA,THYM
ENSG00000261824	ENSG00000146757	ZNF92	ENSG00000101126	ADNP	6	ACC,KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000101126	ADNP	9	KICH,LAML,LGG,LUAD,PCPG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000166526	ZNF3	ENSG00000101126	ADNP	5	ACC,GBM,KICH,LGG,PCPG
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000101126	ADNP	10	ACC,GBM,KICH,LAML,LGG,LUAD,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000168661	ZNF30	ENSG00000101126	ADNP	7	ACC,GBM,LAML,LGG,PCPG,SKCM,THYM
ENSG00000261824	ENSG00000170448	NFXL1	ENSG00000101126	ADNP	6	ACC,KICH,LAML,LUAD,SKCM,THCA
ENSG00000261824	ENSG00000171649	ZIK1	ENSG00000101126	ADNP	7	ACC,GBM,KICH,LAML,LGG,PCPG,THCA
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000101126	ADNP	9	ACC,KICH,LAML,LGG,LUAD,PCPG,SKCM,THCA,THYM
ENSG00000261824	ENSG00000196670	ZFP62	ENSG00000101126	ADNP	5	KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000101126	ADNP	9	ACC,KICH,LAML,LUAD,PCPG,SKCM,THCA,THYM,UCEC
ENSG00000261824	ENSG00000198040	ZNF84	ENSG00000101126	ADNP	5	KICH,LAML,LUAD,PCPG,SKCM
ENSG00000261824	ENSG00000198521	ZNF43	ENSG00000101126	ADNP	5	GBM,KICH,LAML,LUAD,UCEC
ENSG00000261824	ENSG00000275111	ZNF2	ENSG00000101126	ADNP	6	ACC,GBM,KICH,LAML,THCA,THYM
ENSG00000261824	ENSG00000278129	ZNF8	ENSG00000101126	ADNP	7	KICH,LAML,LGG,LUAD,PCPG,SKCM,UCEC
ENSG00000261824	ENSG00000005889	ZFX	ENSG00000120784	ZFP30	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000025293	PHF20	ENSG00000120784	ZFP30	6	KICH,LAML,LGG,LUAD,THYM,UCEC
ENSG00000261824	ENSG00000036549	ZZZ3	ENSG00000120784	ZFP30	6	KICH,LAML,LGG,LUAD,THCA,THYM
ENSG00000261824	ENSG00000062194	GPBP1	ENSG00000120784	ZFP30	5	KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000120784	ZFP30	10	ACC,GBM,KICH,LAML,LGG,LUAD,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000105127	AKAP8	ENSG00000120784	ZFP30	5	ACC,KICH,LGG,THCA,THYM
ENSG00000261824	ENSG00000105708	ZNF14	ENSG00000120784	ZFP30	6	ACC,GBM,KICH,LAML,PCPG,THCA
ENSG00000261824	ENSG00000105750	ZNF85	ENSG00000120784	ZFP30	6	ACC,GBM,KICH,LAML,LUAD,THCA
ENSG00000261824	ENSG00000124459	ZNF45	ENSG00000120784	ZFP30	6	ACC,KICH,LAML,LGG,THCA,THYM
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000120784	ZFP30	9	ACC,GBM,KICH,LAML,LGG,LUAD,PCPG,THYM,UCEC
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000120784	ZFP30	7	ACC,KICH,LAML,LUAD,PCPG,THCA,THYM
ENSG00000261824	ENSG00000146757	ZNF92	ENSG00000120784	ZFP30	6	ACC,KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000120784	ZFP30	8	KICH,LAML,LGG,LUAD,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000120784	ZFP30	10	ACC,GBM,KICH,LAML,LGG,LUAD,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000168661	ZNF30	ENSG00000120784	ZFP30	7	ACC,GBM,LAML,LGG,PCPG,THCA,THYM
ENSG00000261824	ENSG00000169981	ZNF35	ENSG00000120784	ZFP30	5	GBM,KICH,LAML,LGG,THCA
ENSG00000261824	ENSG00000170448	NFXL1	ENSG00000120784	ZFP30	5	ACC,KICH,LAML,LUAD,THCA
ENSG00000261824	ENSG00000171649	ZIK1	ENSG00000120784	ZFP30	7	ACC,GBM,KICH,LAML,LGG,PCPG,THCA
ENSG00000261824	ENSG00000181007	ZFP82	ENSG00000120784	ZFP30	5	BRCA,GBM,LAML,LGG,THCA
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000120784	ZFP30	8	ACC,KICH,LAML,LGG,LUAD,PCPG,THCA,THYM
ENSG00000261824	ENSG00000196670	ZFP62	ENSG00000120784	ZFP30	5	KICH,LAML,PCPG,THCA,THYM
ENSG00000261824	ENSG00000196867	ZFP28	ENSG00000120784	ZFP30	9	ACC,BRCA,KICH,LAML,LUAD,PCPG,THCA,THYM,UCEC
ENSG00000261824	ENSG00000198521	ZNF43	ENSG00000120784	ZFP30	6	ACC,GBM,KICH,LAML,LUAD,UCEC
ENSG00000261824	ENSG00000275111	ZNF2	ENSG00000120784	ZFP30	5	GBM,KICH,LAML,THCA,THYM
ENSG00000261824	ENSG00000278129	ZNF8	ENSG00000120784	ZFP30	7	BRCA,KICH,LAML,LGG,LUAD,PCPG,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000136451	VEZF1	5	GBM,KICH,LAML,LGG,THYM
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000136451	VEZF1	5	GBM,KICH,LAML,LGG,THYM
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000136451	VEZF1	5	GBM,KICH,LAML,LGG,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000189308	LIN54	5	KICH,LAML,LUAD,PCPG,THCA
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000189308	LIN54	5	KICH,LAML,LUAD,PCPG,THCA
ENSG00000261824	ENSG00000146587	RBAK	ENSG00000189308	LIN54	5	KICH,LAML,LUAD,PCPG,THCA
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000189308	LIN54	5	KICH,LAML,LUAD,PCPG,THCA
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000189308	LIN54	5	KICH,LAML,LUAD,PCPG,THCA
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000189308	LIN54	5	KICH,LAML,LUAD,PCPG,THCA
ENSG00000261824	ENSG00000005889	ZFX	ENSG00000109381	ELF2	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000109381	ELF2	6	ACC,KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000109381	ELF2	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000109381	ELF2	5	ACC,KICH,LAML,LUAD,UCEC
ENSG00000261824	ENSG00000146757	ZNF92	ENSG00000109381	ELF2	6	ACC,KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000109381	ELF2	5	KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000167232	ZNF91	ENSG00000109381	ELF2	6	ACC,KICH,LAML,LUAD,THCA,UCEC
ENSG00000261824	ENSG00000036549	ZZZ3	ENSG00000198538	ZNF28	5	KICH,LAML,LGG,SKCM,THYM
ENSG00000261824	ENSG00000101126	ADNP	ENSG00000198538	ZNF28	5	KICH,LAML,LGG,SKCM,THYM
ENSG00000261824	ENSG00000120784	ZFP30	ENSG00000198538	ZNF28	5	GBM,KICH,LAML,LGG,THYM
ENSG00000261824	ENSG00000124459	ZNF45	ENSG00000198538	ZNF28	5	KICH,LAML,LGG,SKCM,THYM
ENSG00000261824	ENSG00000142065	ZFP14	ENSG00000198538	ZNF28	5	GBM,KICH,LAML,LGG,THYM
ENSG00000261824	ENSG00000164631	ZNF12	ENSG00000198538	ZNF28	5	KICH,LAML,LGG,SKCM,THYM
ENSG00000261824	ENSG00000168661	ZNF30	ENSG00000198538	ZNF28	5	GBM,LAML,LGG,SKCM,THYM
ENSG00000261824	ENSG00000186272	ZNF17	ENSG00000198538	ZNF28	5	KICH,LAML,LGG,SKCM,THYM

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000261824.5	ENST00000588027.4	59	188	364
ENSG00000261824.5	ENST00000590677.4	111	333	1
ENSG00000261824.5	ENST00000588150.4	80	490	732
ENSG00000261824.5	ENST00000561521.1	67	60	263
ENSG00000261824.5	ENST00000586248.4	73	6	227
ENSG00000261824.5	ENST00000586954.1	50	380	532
ENSG00000261824.5	ENST00000591338.1	111	1155	1490
ENSG00000261824.5	ENST00000590523.1	93	432	151
ENSG00000261824.5	ENST00000591458.1	105	646	963

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential