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lncRNA: ENSG00000261373

Summary for VPS9D1-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000261373
	Gene symbol	VPS9D1-AS1
	Gene name	VPS9D1 antisense RNA 1
	HGNC	48915
	Entrez ID	100128881
	Gene type	antisense
	Synonyms	VPS9D1-AS1\|16q24.3
	UniProtAcc

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Structure and expression level for VPS9D1-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000261373	1.684632e+02	1.882287e+00	3.579252e-01	5.258884e+00	1.450000e-07	1.110000e-06	UP	CHOL
ENSG00000261373	3.350220e+02	1.679711e+00	3.172855e-01	5.294003e+00	1.200000e-07	1.320000e-06	UP	BLCA
ENSG00000261373	3.392835e+02	3.579597e+00	7.093730e-01	5.046142e+00	4.510000e-07	1.250000e-05	UP	CESC
ENSG00000261373	1.143061e+02	1.700430e+00	2.291837e-01	7.419507e+00	1.180000e-13	1.370000e-12	UP	KIRP
ENSG00000261373	4.254560e+02	1.497664e+00	1.833961e-01	8.166281e+00	3.180000e-16	3.740000e-15	UP	UCEC
ENSG00000261373	1.090983e+03	1.324717e+00	3.196714e-01	4.143996e+00	3.410000e-05	5.313150e-04	UP	ESCA
ENSG00000261373	6.582222e+02	1.888121e+00	1.319359e-01	1.431090e+01	1.870000e-46	5.950000e-44	UP	PRAD
ENSG00000261373	5.814992e+02	3.658579e+00	1.664120e-01	2.198506e+01	4.000000e-107	5.060000e-105	UP	LUSC
ENSG00000261373	2.245156e+02	2.828733e+00	1.743438e-01	1.622503e+01	3.360000e-59	2.800000e-57	UP	LUAD
ENSG00000261373	4.157809e+02	2.505788e+00	1.612759e-01	1.553727e+01	1.940000e-54	2.270000e-52	UP	COAD
ENSG00000261373	6.943752e+02	1.796545e+00	2.206620e-01	8.141616e+00	3.900000e-16	1.410000e-14	UP	STAD
ENSG00000261373	5.228796e+02	3.070064e+00	3.093921e-01	9.922889e+00	3.310000e-23	1.240000e-20	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000261373	4.475338e-01	2.052972e-03	CHOL	3.116515e-03
ENSG00000261373	4.302951e-01	3.055217e-26	PRAD	1.000074e-23

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lncRNA-Protein interaction for VPS9D1-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000127511	SIN3B	66.21	90.3799	O75182	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000108773	KAT2A	54.74	91.3464	Q92830	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000131747	TOP2A	52.7	94.0199	P11388	Epi	Predict
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000085999	RAD54L	51.42	90.6351	Q92698	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000001497	LAS1L	49.48	92.3517	Q9Y4W2	Epi	Predict
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000276043	UHRF1	38.61	92.077	Q96T88	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000172273	HINFP	35.25	90.4766	Q9BQA5	TF,Epi	ChIP-seq
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000108604	SMARCD2	23.69	90.4199	Q92925	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000182979	MTA1	23.33	91.9871	Q13330	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000127616	SMARCA4	73.28	93.6993	P51532	Epi	Predict
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000162302	RPS6KA4	62.31	90.4036	O75676	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000132382	MYBBP1A	58.6	91.2305	Q9BQG0	Epi	Predict
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000149480	MTA2	33.79	90.7031	O94776	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000166164	BRD7	24.76	92.4289	Q9NPI1	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000133895	MEN1	23.51	91.7679	O00255	Epi	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000101442	ACTR5	14.6	91.7466	Q9H9F9	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000070476	ZXDC	46.19	91.0289	Q2QGD7	TF	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000172273	HINFP	35.25	90.6689	Q9BQA5	TF,Epi	ChIP-seq
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000179886	TIGD5	11.41	91.1495	Q53EQ6	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261373	ENST00000562298	VPS9D1-AS1	ENSG00000167978	SRRM2	18.09	91.682	Q9UQ35	RBP	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000013573	DDX11	65.46	91.2009	Q96FC9	RBP	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000106344	RBM28	50.57	92.827	Q9NW13	RBP	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000071894	CPSF1	49.62	91.7386	Q10570	RBP	Predict
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000132153	DHX30	39.63	91.2895	Q7L2E3	RBP	NA
ENSG00000261373	ENST00000562866	VPS9D1-AS1	ENSG00000085872	CHERP	37.39	94.3238	Q8IWX8	RBP	NA

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lncRNA-DNA interaction for VPS9D1-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for VPS9D1-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SARAF,PLCL2,PLPP1,ATP6V1D,HBP1,PBXIP1,SCARB2,YPEL2,SLC35A5,RAI2,OPTN,IL6ST,CDC42SE2,SECISBP2L,CAST,SELENOP,RAB27A,NCOA4,BTD,GNG2,POLR3GL,TMBIM4,A2M,PDE4D,JAM2,PLSCR4,TXNIP,CREBRF,GYPC

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000261373	ENST00000562298	exon_skip_44998	chr10:110132304-110132400	-7.52	-0.3008	ADD3	ENST00000356080	In-frame
ENSG00000261373	ENST00000562298	exon_skip_324294	chr2:27774423-27774530	-11.56	-0.1482	MRPL33	ENST00000296102	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_467017	chr7:74190246-74190306	-10.48	-0.3614	EIF4H	ENST00000265753	In-frame
ENSG00000261373	ENST00000562298	exon_skip_499771	chr9:128592982-128593042	-13.15	-0.5058	SPTAN1	ENST00000372731	In-frame
ENSG00000261373	ENST00000562298	exon_skip_517627	chrX:154357250-154357274	-8.09	-0.4045	FLNA	ENST00000369850	In-frame
ENSG00000261373	ENST00000562298	exon_skip_132443	chr16:2077597-2077726	-19.80	-0.1650	TSC2	ENST00000219476	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000261373	ENST00000562298	exon_skip_5818	chr1:45568484-45568684	-22.02	-0.1376	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_30682	chr1:151310210-151310255	-8.59	-0.4772	PI4KB	ENST00000368873	In-frame
ENSG00000261373	ENST00000562298	exon_skip_48327	chr10:26771074-26771089	-5.74	-0.5218	ABI1	ENST00000376142	In-frame
ENSG00000261373	ENST00000562298	exon_skip_61014	chr11:65393572-65393674	-20.18	-0.2883	FRMD8	ENST00000317568	In-frame
ENSG00000261373	ENST00000562298	exon_skip_110809	chr14:105449358-105449409	-17.45	-0.3966	MTA1	ENST00000331320	In-frame
ENSG00000261373	ENST00000562298	exon_skip_140339	chr16:635611-635774	-25.09	-0.1673	METTL26	ENST00000301686	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_145647	chr16:69121052-69121170	-15.56	-0.1729	CHTF8	ENST00000398235,ENST00000448552	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_150854	chr17:32366664-32366757	-11.21	-0.2002	ZNF207	ENST00000321233	In-frame
ENSG00000261373	ENST00000562298	exon_skip_302353	chr19:11033766-11033865	-15.97	-0.1815	SMARCA4	ENST00000344626,ENST00000429416	In-frame
ENSG00000261373	ENST00000562298	exon_skip_303345	chr19:17227839-17228005	-24.63	-0.1664	OCEL1	ENST00000215061	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_339935	chr2:70991829-70991983	-19.94	-0.1385	TEX261	ENST00000272438	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_374552	chr3:50104247-50104308	-9.24	-0.1925	RBM5	ENST00000347869	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_478176	chr7:100435630-100435767	-22.56	-0.1849	PPP1R35	ENST00000292330	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_490705	chr8:86484871-86484961	-9.19	-0.1135	RMDN1	ENST00000406452	In-frame
ENSG00000261373	ENST00000562298	exon_skip_497426	chr9:94456239-94456337	-16.50	-0.2143	MFSD14B	ENST00000375344	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_353131	chr20:58669290-58669453	-23.69	-0.2025	STX16	ENST00000371141	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_380242	chr3:186784961-186785101	-13.91	-0.1113	EIF4A2	ENST00000323963	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_446770	chr5:178215275-178215430	-18.85	-0.1346	PHYKPL	ENST00000308158	Frame-shift
ENSG00000261373	ENST00000562298	exon_skip_83512	chr12:53505134-53505262	-16.93	-0.2645	TARBP2	ENST00000266987	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for VPS9D1-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000261373	ENST00000562866	BTD	ENSG00000169814	ENST00000417015	-0.1154	43	-	CHOL,CESC,ESCA,LUSC,COAD,STAD
ENSG00000261373	ENST00000562866	BTD	ENSG00000169814	ENST00000449107	-0.3027	152	-	CHOL,CESC,ESCA,LUSC,COAD,STAD
ENSG00000261373	ENST00000562866	BTD	ENSG00000169814	ENST00000437172	-0.1379	169	-	CHOL,CESC,ESCA,LUSC,COAD,STAD
ENSG00000261373	ENST00000562866	A2M	ENSG00000175899	ENST00000318602	-0.1256	536	-	CHOL,BLCA,CESC,KIRP,UCEC,LUSC,LUAD,COAD,READ
ENSG00000261373	ENST00000562866	A2M	ENSG00000175899	ENST00000539638	-0.1296	819	-	CHOL,BLCA,CESC,KIRP,UCEC,LUSC,LUAD,COAD,READ
ENSG00000261373	ENST00000562866	SELENOP	ENSG00000250722	ENST00000507920	-0.1098	99	-	CHOL,BLCA,KIRP,UCEC,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562866	PLPP1	ENSG00000067113	ENST00000509667	-0.1083	1	-	CESC,KIRP,UCEC,COAD,READ
ENSG00000261373	ENST00000562866	RAB27A	ENSG00000069974	ENST00000564609	-0.1199	919	-	CHOL,BLCA,ESCA,LUSC,COAD,STAD,READ
ENSG00000261373	ENST00000562866	RAB27A	ENSG00000069974	ENST00000569493	-0.1199	923	-	CHOL,BLCA,ESCA,LUSC,COAD,STAD,READ
ENSG00000261373	ENST00000562866	PDE4D	ENSG00000113448	ENST00000503258	-0.1775	69	-	BLCA,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	PDE4D	ENSG00000113448	ENST00000405755	-0.1522	69	-	BLCA,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	PDE4D	ENSG00000113448	ENST00000502484	-1.8000	1466	-	BLCA,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	PDE4D	ENSG00000113448	ENST00000515835	-0.1409	483	-	BLCA,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	PLSCR4	ENSG00000114698	ENST00000446574	-0.1311	523	-	CHOL,BLCA,UCEC,LUSC,LUAD,COAD,READ
ENSG00000261373	ENST00000562866	PLSCR4	ENSG00000114698	ENST00000493382	-0.2060	1628	-	CHOL,BLCA,UCEC,LUSC,LUAD,COAD,READ
ENSG00000261373	ENST00000562298	BTD	ENSG00000169814	ENST00000449107	-0.2075	239	-	CHOL,CESC,ESCA,LUSC,COAD,STAD
ENSG00000261373	ENST00000562298	BTD	ENSG00000169814	ENST00000437172	-0.1313	106	-	CHOL,CESC,ESCA,LUSC,COAD,STAD
ENSG00000261373	ENST00000562298	SELENOP	ENSG00000250722	ENST00000507920	-0.1155	188	-	CHOL,BLCA,KIRP,UCEC,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562298	RAB27A	ENSG00000069974	ENST00000564609	-0.1457	98	-	CHOL,BLCA,ESCA,LUSC,COAD,STAD,READ
ENSG00000261373	ENST00000562298	RAB27A	ENSG00000069974	ENST00000569493	-0.1457	102	-	CHOL,BLCA,ESCA,LUSC,COAD,STAD,READ
ENSG00000261373	ENST00000562298	PDE4D	ENSG00000113448	ENST00000503258	-0.1205	183	-	BLCA,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	PDE4D	ENSG00000113448	ENST00000405755	-0.1205	185	-	BLCA,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	PDE4D	ENSG00000113448	ENST00000502484	-1.8000	645	-	BLCA,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	PDE4D	ENSG00000113448	ENST00000502575	-0.1058	1	-	BLCA,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	PDE4D	ENSG00000113448	ENST00000515835	-0.1005	1	-	BLCA,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	PLSCR4	ENSG00000114698	ENST00000493382	-0.2060	807	-	CHOL,BLCA,UCEC,LUSC,LUAD,COAD,READ
ENSG00000261373	ENST00000562866	IL6ST	ENSG00000134352	ENST00000502326	-0.2462	390	-	CHOL,BLCA,CESC,UCEC,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	SECISBP2L	ENSG00000138593	ENST00000561428	-0.1115	34	-	CESC,ESCA,LUSC,LUAD,READ
ENSG00000261373	ENST00000562866	JAM2	ENSG00000154721	ENST00000400532	-0.1040	420	-	BLCA,KIRP,UCEC,ESCA,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562866	CDC42SE2	ENSG00000158985	ENST00000502582	-0.1407	800	-	READ
ENSG00000261373	ENST00000562866	GNG2	ENSG00000186469	ENST00000553432	-0.1636	196	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	GNG2	ENSG00000186469	ENST00000556522	-0.1360	1265	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	GNG2	ENSG00000186469	ENST00000557376	-0.1948	262	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	GNG2	ENSG00000186469	ENST00000554736	-0.1293	136	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	GNG2	ENSG00000186469	ENST00000554875	-0.1602	187	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562866	TXNIP	ENSG00000265972	ENST00000425134	-2.0050	841	-	CHOL,BLCA,CESC,UCEC,ESCA,LUSC,COAD,STAD,READ
ENSG00000261373	ENST00000562866	NCOA4	ENSG00000266412	ENST00000580070	-0.1228	722	-	CHOL,COAD,READ
ENSG00000261373	ENST00000562866	NCOA4	ENSG00000266412	ENST00000579039	-0.1228	771	-	CHOL,COAD,READ
ENSG00000261373	ENST00000562866	GYPC	ENSG00000136732	ENST00000259254	-0.1049	98	-	BLCA,CESC,UCEC,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562866	GYPC	ENSG00000136732	ENST00000356887	-0.1049	93	-	BLCA,CESC,UCEC,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562866	GYPC	ENSG00000136732	ENST00000409836	-0.1049	104	-	BLCA,CESC,UCEC,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562866	PBXIP1	ENSG00000163346	ENST00000368460	-0.1267	547	-	BLCA,CESC,ESCA,COAD,STAD,READ
ENSG00000261373	ENST00000562866	PBXIP1	ENSG00000163346	ENST00000490230	-0.1882	79	-	BLCA,CESC,ESCA,COAD,STAD,READ
ENSG00000261373	ENST00000562866	RAI2	ENSG00000131831	ENST00000415486	-0.1308	1	-	BLCA,CESC,UCEC,ESCA,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562866	RAI2	ENSG00000131831	ENST00000360011	-0.1308	1	-	BLCA,CESC,UCEC,ESCA,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562866	RAI2	ENSG00000131831	ENST00000331511	-0.1308	1	-	BLCA,CESC,UCEC,ESCA,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562866	RAI2	ENSG00000131831	ENST00000451717	-0.1308	1	-	BLCA,CESC,UCEC,ESCA,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562866	RAI2	ENSG00000131831	ENST00000545871	-0.1308	1	-	BLCA,CESC,UCEC,ESCA,LUSC,LUAD,COAD,STAD,READ
ENSG00000261373	ENST00000562298	IL6ST	ENSG00000134352	ENST00000502326	-0.3452	125	-	CHOL,BLCA,CESC,UCEC,ESCA,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	SECISBP2L	ENSG00000138593	ENST00000561428	-0.1032	485	-	CESC,ESCA,LUSC,LUAD,READ
ENSG00000261373	ENST00000562298	PLCL2	ENSG00000154822	ENST00000419842	-0.1304	1	-	KIRP,UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	TMBIM4	ENSG00000155957	ENST00000545504	-0.3325	867	-	READ
ENSG00000261373	ENST00000562298	CREBRF	ENSG00000164463	ENST00000520420	-0.1658	285	-	BLCA,CESC,UCEC,LUSC,READ
ENSG00000261373	ENST00000562298	GNG2	ENSG00000186469	ENST00000553432	-0.1384	425	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	GNG2	ENSG00000186469	ENST00000556522	-0.1360	444	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	GNG2	ENSG00000186469	ENST00000557376	-0.1700	21	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	GNG2	ENSG00000186469	ENST00000554736	-0.1078	1	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	GNG2	ENSG00000186469	ENST00000554875	-0.1441	3	-	UCEC,LUSC,COAD,READ
ENSG00000261373	ENST00000562298	TXNIP	ENSG00000265972	ENST00000425134	-0.6483	428	-	CHOL,BLCA,CESC,UCEC,ESCA,LUSC,COAD,STAD,READ
ENSG00000261373	ENST00000562298	NCOA4	ENSG00000266412	ENST00000580070	-0.1171	1	-	CHOL,COAD,READ
ENSG00000261373	ENST00000562298	NCOA4	ENSG00000266412	ENST00000579039	-0.1171	1	-	CHOL,COAD,READ
ENSG00000261373	ENST00000562298	PBXIP1	ENSG00000163346	ENST00000368460	-0.1426	551	-	BLCA,CESC,ESCA,COAD,STAD,READ
ENSG00000261373	ENST00000562298	PBXIP1	ENSG00000163346	ENST00000490230	-0.1326	25	-	BLCA,CESC,ESCA,COAD,STAD,READ

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000261373.1	ENST00000562866.1	110	388	56
ENSG00000261373.1	ENST00000562298.1	271	102	917

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential