 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,RBM19,PUM1,XRN1,BCL6,ILF3,GLI4,PBX2,RBM39,KLF12,IRF3,LCORL,DDX56,MZF1,MYSM1,NRF1,AKAP8,ZNF2,ARID2,ZXDC,SUGP2,DMTF1,RBM27,ZNF70,ZNF24,RBM28,GABPA,IKZF5,DDX55,KMT2B,STAT2,TET3,ZBTB5,ZFP14,RNPC3,ZFP69,SNRPA,BARD1,SAFB2,THOC1,ZNF25,TRNT1,CNOT4,SON,CHTOP,TFAP4,ZBED5,ZZZ3,SCAF4,CENPT,TTC14,CREB1,RC3H1,SUGP1,ZNF44,ZNF91,SRSF4,RBMX,AGO2,RBM4B,CSTF3,RBM26,ZFP1,CPSF1,RBM14,PURB,ADNP,MYEF2,IKZF4,PUS7L,ASH1L,MEIS1,CLOCK,DHX34,NFIA,FUBP1,RBM15,ZFP30,SP4,CPSF7,UBR5,THAP9,THOC2,DDX6,CXXC1,THAP6,PATZ1,DDX17,E2F5,MOV10,SRRM2,RFX7,FMR1,LCOR,MECP2,FOXJ3,PURA,ZNF41,ZC3H8,HSF4,RBM41,NOL9,DZIP3,ZFP62,SGSM2,CELF1,SCMH1,ELK4,TIGD1,RBM45,NFXL1,PRDM2,SRSF2,MBD6,ZGPAT,FIZ1,MYNN,ZMAT1,ZNF83,NSUN6,RFX3,ZFX,ZNF8,ZNF18,NR2C2,SYNJ1,DDX11,PUS10,RBM6,HMGN3,ZNF14,RBM48,ZFHX3,PUM2,XPO1,RBM5,ELF2,SMAD4,RBMS1,IKZF2,ZNF43,ZFP28,SP3,ZNF17,DOT1L,ZNF84,DDX42,BAZ2B,RXRB,TRA2A,AHDC1,KMT2A,ZNF69,SRSF7,HINFP,NR2C1,ZFP3,TEP1,ZBED6,SFPQ,TET2,RBM33,NOL8,ATF2,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | AGO1,E2F5,DOT1L,BCL6,DDX17,ZFP14,MZF1,MLXIP,UBR5,ZNF18,E4F1,RBM5,RFX7,CNOT6,MECP2,CXXC1,ZMAT1,ZNF14,ZNF85,STAT2,SRSF5,SYNJ1,ZFP2,TFAP4,RCAN3,FMR1,FUBP1,LCOR,REST,MYNN,ZNF69,IKZF2,CPSF7,RC3H1,ZNF83,PUS10,RBM6,ZFHX3,ZFP30,TET2,ZFP3,ZNF70,AGO4,TEP1,ZNF30,NFIA,CELF1,TRA2A,IRF3,PRDM2,ZGPAT,LCORL,MEIS1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | RNH1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000261326 | ENST00000604481 | exon_skip_1234 | chr1:11658532-11658628 | -8.79 | -0.1142 | FBXO44 | ENST00000251547,ENST00000376770 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000261326 | ENST00000604481 | exon_skip_327433 | chr2:86125794-86125880 | -5.97 | -0.1531 | PTCD3 | ENST00000254630 | Frame-shift | | ENSG00000261326 | ENST00000604481 | exon_skip_370518 | chr22:50247691-50247776 | -9.54 | -0.1491 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000261326 | ENST00000604481 | exon_skip_382458 | chr3:38131595-38131638 | -4.47 | -0.5587 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000261326 | ENST00000566551 | exon_skip_470226 | chr7:103307595-103307708 | -13.46 | -0.1402 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000261326 | ENST00000604481 | exon_skip_133217 | chr16:8635038-8635079 | -7.73 | -0.3865 | METTL22 | ENST00000381920 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | | ENSG00000261326 | ENSG00000134815 | DHX34 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | SARC,OV,PRAD,UCS,PAAD,THCA |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000261326.2 | ENST00000566551.1 | 131 | 16 | 411 | | ENSG00000261326.2 | ENST00000604481.1 | 91 | 2500 | 2225 |
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