 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | JMJD4,OARD1,MORN2,C1orf210,TAF6L,THAP4,TMEM17,IFT22,CIRBP,DYNC2LI1,STMP1,FAM98C,WDR83OS,C1orf56,DYNC2I2,CDPF1,SWI5,ETNK2,HSBP1,MYL12B,C1orf35,HSD17B8,TIMM17B,OSCP1,LRRC42,COX16,PNKD,TUBB2A,SP5,SMAGP,EFNA4,TMEM9,DSP,STK16,CTDSP1,RECQL5,LSM3,NARF,SURF1,RAB36,SWSAP1,SENP3,COA3,RBKS,ARL3,POLR2I,MED31,UQCRH,EBNA1BP2,PPIH,SVBP,SPACA9,DSC3,UBL7,ECI1,ARMC5,C19orf44,IQCD,LSM4,PERP,C1orf50,SNU13,DNAJB2,TMEM99,SDF2,SNRPD3,SERPINB6,TARBP2,ERI3,LYRM4,TP53I3,DPY30,UBL5,PPIE,UROD,FANCE,NELFE,ELP6,METTL23,CXXC1,ERMARD,BABAM1,PIH1D1,ELP5,TBCB,CETN2,CDKN2AIPNL,TBC1D7,PPP1R3F,ATRAID,SLC25A17,PEX16,IFT46,ANKRD54,GTF2A2,C17orf97,ERP29,CCDC90B,STK19,MEA1,FAM228B,TMEM139,RNF25,PDAP1,PARL,NFKBIL1,PTMS,FUZ,COA8,CENPS,POLR1C,SUPT3H,CHST10,KIF9,C2orf76,SLC35B2,BRAT1,LRTOMT,DLX3,PSMG3,TRAPPC3,RABIF,MYL6B,RIOK1,PPIL1,HMGN3,YIPF3,KLHDC3,PSMB1,DUSP28,AAMP,POP5,BOLA1,PDRG1,SOD1,CUEDC2,PHLDA3,TMEM11,DYNLL1,RPP40,SDHAF2,ECI2,FKBP3,TUBD1,GNL1,PHF5A,MRPL43,PTCD1,PTRHD1,CCDC71,B9D1,DTNBP1,FARS2,KIF12,GPS1,TMEM125,TSPAN6,MCRIP1,DXO,B9D2,SPAG7,ATP5IF1,HSD17B10,VPS72 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ECI1,CHST10,C9orf3,C14orf79,ATPIF1,CUEDC2,SCAMP4,FAM195B,DTNBP1,COMMD3,TMEM9,C1orf56,LYRM4,CCDC90B,PTCD1,VPS72,CXXC1,C19orf44,PSMB1,TSPAN6,GPANK1,TUBD1,FKBPL,COX16,BABAM1,WRNIP1,EMC4,MANBAL,VPS37D,SNRPC,NENF,PIH1D1,DSP,GTF2A2,ELAC1,SPINT2,SMAGP,OSCP1,TIMM17B,CIRBP | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ZEB1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000261189 | ENST00000561592 | exon_skip_126350 | chr15:42192065-42192098 | -6.91 | -0.2764 | VPS39 | ENST00000348544 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000261189 | ENST00000561592 | exon_skip_81540 | chr12:42384939-42384996 | -9.02 | -0.2050 | PPHLN1 | ENST00000395568 | In-frame | | ENSG00000261189 | ENST00000561592 | exon_skip_368285 | chr22:29329711-29329720 | -2.82 | -0.5640 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000261189 | ENST00000561592 | exon_skip_515330 | chrX:65524563-65524614 | -7.97 | -0.1696 | LAS1L | ENST00000374811 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000261189 | ENSG00000096696 | DSP | ACC,BLCA,BRCA,CESC,CHOL,ESCA,OV,PAAD,STAD,THCA,THYM,UCS,UVM | CESC | | | ENSG00000261189 | ENSG00000143793 | C1orf35 | ACC,BRCA,CHOL,KIRP,PAAD,TGCT,UVM | BRCA | | | ENSG00000261189 | ENSG00000243364 | EFNA4 | ACC,BRCA,CESC,OV,TGCT,UCEC | BRCA,CESC,UCEC | | | ENSG00000261189 | ENSG00000134762 | DSC3 | BLCA,BRCA,CESC,ESCA,STAD | CESC | | | ENSG00000261189 | ENSG00000105254 | TBCB | BRCA,KICH,KIRP,PAAD,TGCT | BRCA | | | ENSG00000261189 | ENSG00000126768 | TIMM17B | BRCA,KICH,KIRP,PAAD,TGCT | BRCA | | | ENSG00000261189 | ENSG00000145979 | TBC1D7 | BRCA,CHOL,ESCA,KICH,OV,PAAD,STAD,TGCT,UCEC | BRCA,UCEC | | | ENSG00000261189 | ENSG00000126088 | UROD | CHOL,KICH,KIRP,PAAD,TGCT | | CHOL | | ENSG00000261189 | ENSG00000140691 | ARMC5 | CHOL,KIRP,PAAD,TGCT,THCA,THYM | | CHOL |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000261189.1 | ENST00000561592.1 | 55 | 42 | 209 |
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