Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000261167

Summary for RP11-517B11.7

Gene summary

Gene information	Ensembl ID	ENSG00000261167
	Gene symbol	RP11-517B11.7
	Gene name
	HGNC
	Entrez ID
	Gene type	sense_overlapping
	Synonyms
	UniProtAcc

Top

Structure and expression level for RP11-517B11.7

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID

Base mean

log2FC(AD/control)

lfcSE

Stat

P-value

Adjc.p-value

DEG direction

Cancer type

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

Top

lncRNA-Protein interaction for RP11-517B11.7

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000067369	TP53BP1	80.67	93.1564	Q12888	Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000175054	ATR	66.06	90.2866	Q13535	Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000118058	KMT2A	64.06	95.3337	Q03164	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000263001	GTF2I	62.67	91.5136	P78347	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000085224	ATRX	61.96	95.7374	P46100	Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000101126	ADNP	60.22	90.8053	Q9H2P0	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000140396	NCOA2	50.75	92.3602	Q15596	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000181555	SETD2	73.71	90.8988	Q9BYW2	Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000165671	NSD1	69.38	91.4325	Q96L73	Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000164190	NIPBL	64.93	96.7889	Q6KC79	Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000116539	ASH1L	63.62	90.5577	Q9NR48	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000071794	HLTF	56.9	92.2625	Q14527	Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000131263	RLIM	11.52	90.629	Q9NVW2	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000144747	TMF1	81.42	93.4703	P82094	TF	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000096401	CDC5L	77.61	94.0613	Q99459	TF,RBP	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000100207	TCF20	64.52	91.9947	Q9UGU0	TF	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000118058	KMT2A	64.06	95.4068	Q03164	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000116539	ASH1L	63.62	90.6838	Q9NR48	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000263001	GTF2I	62.67	90.9405	P78347	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000181827	RFX7	62.57	90.627	Q2KHR2	TF	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000101126	ADNP	60.22	90.9936	Q9H2P0	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000147124	ZNF41	54.78	90.6598	P51814	TF	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000140396	NCOA2	50.75	92.4769	Q15596	TF,Epi	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000184939	ZFP90	27.88	90.6869	Q8TF47	TF	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000085274	MYNN	4.11	91.1436	Q9NPC7	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000096401	CDC5L	77.61	94.1326	Q99459	TF,RBP	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000213079	SCAF8	65.98	91.6114	Q9UPN6	RBP	NA
ENSG00000261167	ENST00000565095	RP11-517B11.7	ENSG00000091009	RBM27	61.32	92.8683	Q9P2N5	RBP	NA

Top

lncRNA-DNA interaction for RP11-517B11.7

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

NCOA2,TBC1D15,PIK3R4,PUM1,PREPL,XRN1,USP34,ERI2,CEP63,BRAP,TAF9B,DPY19L3,GPATCH8,ANGEL2,DNAJC27,AP3B1,MSL2,STAG1,CEP68,ARID2,DCP1A,SPICE1,SMG6,SEC24B,FNDC3A,PDS5A,RFC1,TMEM184C,VEZF1,GSK3B,NDUFS1,RBM27,HLTF,PIBF1,ATRX,ZNF24,SMCR8,TASP1,ASTE1,CNOT6L,GABPA,KPNA1,PPP1R12A,PBRM1,DHFR2,PTPN11,RHOT1,PRR14L,WDR5B,PARP11,UBXN7,COG6,CNOT4,CLASP2,COMMD2,DCAF16,CHD8,LANCL1,ACTR8,KIAA1143,ZZZ3,DENND6A,SETD2,ARL6,RLIM,KLHL42,SIN3A,CREB1,SUDS3,DPP8,OPA1,SLC33A1,XPO4,FBXW8,TOGARAM1,CAPN7,SMG1,CHD6,ATR,GIT2,CNOT1,SMAD2,ARIH1,TRAPPC11,PURB,ADNP,ORC4,DNAJB14,PUS7L,RO60,ASH1L,TBCK,MSH3,CLOCK,BBS10,UTP14C,NF1,GMPS,FAN1,UBE3A,TOP2B,EP400,TCF20,LNPEP,THOC2,DDX6,ZBTB6,KIAA0753,THAP6,WDFY3,DHX15,DCAF1,NEMF,VPS36,PJA2,C12orf66,RFX7,SENP7,AQR,LCOR,ZC3H13,SLC35A5,PEX26,ZNF717,PHAX,XPNPEP3,MBD5,ZNF41,ASXL2,MARF1,CTDSPL2,METTL16,GNPDA2,INO80,DZIP3,NEPRO,KPNA4,TUBGCP4,EIF2A,NAA25,TRAPPC8,ZADH2,TLK1,SLC24A1,APPL2,C2orf49,POLK,NUBPL,SYNRG,CHD9,BOD1L1,YTHDC1,TOPBP1,KRR1,TMF1,PIGN,GOLGA4,SPATA5,LRRC58,SECISBP2L,ORC2,VEZT,USF3,RBM18,GOLGB1,FBXO11,SBNO1,PHC3,POGLUT1,MYNN,METTL14,WDR36,OTUD4,RABL3,ZNF720,UMPS,MRPS27,KANSL1,BTBD7,TMTC3,HIF1AN,SCAF11,TASOR,VWA8,SMARCAD1,CHURC1,TTBK2,SCRN3,STAG2,PIKFYVE,TP53BP1,SLC30A6,SNX4,PUM2,HELZ,DHX36,SMAD4,TRIP12,TTC37,MBTD1,CBX5,SP3,TRMT61B,CRBN,RYK,EPM2AIP1,SLC30A9,ERCC8,SCAMP1,ARHGAP5,CCNT1,CCP110,TTC3,BICRAL,PAFAH1B1,MTREX,KMT2A,REV1,NEDD1,FRYL,PGGT1B,TFDP2,NSUN3,SPG11,SELENOI,TAB3,XPO5,APPL1,EIF4ENIF1,TBC1D5,CUL3,LTN1,CFAP97

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for RP11-517B11.7

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SERF2,SCNM1,AURKAIP1,DPM3,GUK1,FAM174C,ELOF1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for RP11-517B11.7

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000261167.1	ENST00000565095.1	54	61	225

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential