 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | GABARAPL1,ZFYVE1,QKI,EVL,MAF | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
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| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000261123 | ENST00000565937 | exon_skip_44998 | chr10:110132304-110132400 | -10.25 | -0.2440 | ADD3 | ENST00000356080 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_59476 | chr11:57815914-57816001 | -13.60 | -0.2267 | CTNND1 | ENST00000399050 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_114200 | chr14:73279280-73279424 | -13.82 | -0.1031 | NUMB | ENST00000355058,ENST00000555238 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_150188 | chr17:27643524-27643620 | -15.84 | -0.1956 | LGALS9 | ENST00000395473 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_386291 | chr3:108050577-108050602 | -7.26 | -0.4271 | CD47 | ENST00000361309 | Frame-shift | | ENSG00000261123 | ENST00000565937 | exon_skip_423795 | chr4:55888887-55888932 | -8.63 | -0.2976 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_461111 | chr6:90544551-90544632 | -12.74 | -0.7494 | MAP3K7 | ENST00000369329 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_44853 | chr10:104010815-104010908 | -12.79 | -0.1640 | SLK | ENST00000369755 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_11259 | chr1:155061414-155061489 | -12.01 | -0.2036 | ADAM15 | ENST00000356955 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000261123 | ENST00000565937 | exon_skip_48327 | chr10:26771074-26771089 | -6.45 | -0.4962 | ABI1 | ENST00000376142 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_90104 | chr12:10709907-10710114 | -20.47 | -0.1442 | YBX3 | ENST00000228251 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_96112 | chr12:109945259-109945349 | -14.99 | -0.2306 | GIT2 | ENST00000355312 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_111672 | chr14:23089981-23090101 | -16.43 | -0.2416 | ACIN1 | ENST00000262710 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_287874 | chr17:29085603-29085648 | -7.74 | -0.2977 | MYO18A | ENST00000527372 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_337919 | chr2:27445744-27445843 | -14.92 | -0.1735 | IFT172 | ENST00000260570 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_376144 | chr3:100311832-100311877 | -7.46 | -0.7460 | TBC1D23 | ENST00000394144 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_382356 | chr3:37091466-37091538 | -11.42 | -0.1936 | LRRFIP2 | ENST00000336686 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_508298 | chr9:136445051-136445111 | -8.13 | -0.1563 | SEC16A | ENST00000313050 | In-frame | | ENSG00000261123 | ENST00000565937 | exon_skip_445390 | chr5:150403120-150403312 | -22.57 | -0.1660 | CD74 | ENST00000009530 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000261123 | ENST00000565937 | EVL | ENSG00000196405 | ENST00000544450 | -0.2244 | 288 | - | PAAD |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000261123.1 | ENST00000565937.1 | 91 | 125 | 400 |
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