Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000261116

Summary for RP3-523K23.2

Gene summary

Gene information	Ensembl ID	ENSG00000261116
	Gene symbol	RP3-523K23.2
	Gene name
	HGNC
	Entrez ID
	Gene type	sense_overlapping
	Synonyms
	UniProtAcc

Top

Structure and expression level for RP3-523K23.2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000261116	2.511033e+02	5.106747e+00	5.416743e-01	9.427708e+00	4.190000e-21	2.390000e-19	UP	CHOL
ENSG00000261116	1.610127e+03	6.150507e+00	7.222784e-01	8.515425e+00	1.660000e-17	2.660000e-15	UP	CESC
ENSG00000261116	1.188027e+02	1.642093e+00	3.293757e-01	4.985471e+00	6.180000e-07	2.670000e-06	UP	UCEC
ENSG00000261116	1.360112e+03	6.562729e+00	1.836506e-01	3.573486e+01	1.140000e-279	2.520000e-276	UP	LUSC
ENSG00000261116	3.819354e+02	1.078941e+00	1.763374e-01	6.118619e+00	9.440000e-10	3.430000e-09	UP	BRCA
ENSG00000261116	1.163100e+02	3.273560e+00	3.208299e-01	1.020341e+01	1.910000e-24	2.660000e-23	UP	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000261116	5.124248e-01	3.199026e-04	CHOL	7.061367e-04

Top

lncRNA-Protein interaction for RP3-523K23.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261116	ENST00000562834	RP3-523K23.2	ENSG00000187605	TET3	68.06	95.2258	O43151	TF,Epi	NA
ENSG00000261116	ENST00000562834	RP3-523K23.2	ENSG00000114933	INO80D	81.38	90.6366	Q53TQ3	Epi	NA
ENSG00000261116	ENST00000562834	RP3-523K23.2	ENSG00000134046	MBD2	27.22	90.5553	Q9UBB5	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000261116	ENST00000562834	RP3-523K23.2	ENSG00000187605	TET3	68.06	95.5424	O43151	TF,Epi	NA
ENSG00000261116	ENST00000562834	RP3-523K23.2	ENSG00000134046	MBD2	27.22	90.8099	Q9UBB5	TF,Epi	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

Top

lncRNA-DNA interaction for RP3-523K23.2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

LYPLA1,MACIR,FBXO9,RNF149,PDCD10,MBOAT1,POF1B,FANCL,TICAM1,TRAF3IP2,ATL2,FABP5,CILK1,SOWAHC,NIPAL2,TRIQK,FAM110C,KDF1,GNG12,PAWR,CAPZA1,FCHO2,ITPRID2,KRT6B,METTL15,METAP1,FEM1B,TGFA,MARVELD3,C12orf29,RAP2C,TNKS1BP1,TAF1D,SLC22A23,CRB3,INO80D,ACBD5,CCDC6,SLC38A2,NIBAN2,SH3YL1,LRRC1,SNAI2,TPMT,BRI3BP,BRCC3,KRT17,GRHL2,SLC25A43,ATP1B1,TET3,NBN,GMFB,DSP,PIK3CB,EFS,PPP4R3B,KDM5B,MREG,UBA6,ABITRAM,COMMD2,KLK10,RAB38,MORC3,CLDN1,ATP8B1,TRIP10,IVNS1ABP,MYO5B,RAB10,SPPL3,DSC3,SMIM15,RAB1A,FERMT1,TACSTD2,LYPD3,RAB14,CDC42BPG,FAM83H,FBXO34,ADAM10,SLC35F2,PERP,PPP1R13L,N4BP1,PURB,GJB5,ORC4,PLD1,BLZF1,IGSF3,NDFIP2,RARG,LAD1,MBD2,KRT6A,KANSL1L,ESRP1,CNKSR1,AGFG1,LIN9,ARHGEF5,GSKIP,RAB22A,TMEM79,MPZL2,KCTD1,B3GNT5,BCL10,NDRG1,FRK,MAP2K4,SNX7,MEAK7,SERPINB1,MAP7,SYPL1,AFDN,KLF3,CHMP2B,ITGA2,STRN,TPD52,ADGRF4,NAA25,RNF11,PRKX,CARMIL1,SLC35A3,CAPN1,SMAD3,PPP4R1,TMEM161B,CPNE8,SH2D3A,SRPK1,MAPK6,BAZ1A,NMI,GLTP,TWF1,NLRX1,SLC35F5,JAG1,JUP,ERAP1,DCUN1D1,NAA50,PTPN13,UCHL5,ABI1,TUBA1C,C6orf132,VPS4B,RPE,YWHAZ,MARVELD2,TMTC3,TUT7,CMTM6,AMMECR1,TTC22,BTBD10,USP43,SLC35B2,CLINT1,VSIG10,GNAI3,FAM83B,TMEM117,TNK1,TGIF1,MANSC1,GJB2,LRP10,PKN2,LPAR3,RAB25,KRT14,CD24,LGR4,KITLG,S100A11,DST,ESRP2,SPOPL,ARL6IP6,F11R,UEVLD,FRMD8,PTPRK,KLC3,RAP2B,LPAR5,PRICKLE3,YES1,STXBP3,SCAMP1,ERO1A,SCYL2,CDH3,ARL5B,GALNT3,PIK3C2A,HOOK1,PARD6G,REEP3,GRHL3,FZD6,MPZL3,TTLL12,FAM135A,CHMP4C,S100A2,TUFT1,IRF6,LIN7C,PRSS22,TRIM29,ZMYM1,CD2AP

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for RP3-523K23.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

FBLN5,BMERB1,ARRB2,MTFR1L,APBB1,RBPMS,PLEKHO1,KANK3

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000261116	ENST00000562834	exon_skip_44853	chr10:104010815-104010908	-10.42	-0.1532	SLK	ENST00000369755	In-frame
ENSG00000261116	ENST00000562834	exon_skip_64939	chr11:112230207-112230230	-6.24	-0.3284	PTS	ENST00000280362	Frame-shift
ENSG00000261116	ENST00000562834	exon_skip_114200	chr14:73279280-73279424	-14.75	-0.1077	NUMB	ENST00000355058,ENST00000555238	In-frame
ENSG00000261116	ENST00000562834	exon_skip_423795	chr4:55888887-55888932	-7.09	-0.1818	EXOC1	ENST00000346134,ENST00000381295	In-frame
ENSG00000261116	ENST00000562834	exon_skip_508298	chr9:136445051-136445111	-6.88	-0.1529	SEC16A	ENST00000313050	In-frame
ENSG00000261116	ENST00000562834	exon_skip_516535	chrX:119840645-119840684	-6.07	-0.2335	UPF3B	ENST00000276201	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000261116	ENST00000562834	exon_skip_33516	chr1:156938417-156938513	-11.74	-0.2215	ARHGEF11	ENST00000361409	In-frame
ENSG00000261116	ENST00000562834	exon_skip_293641	chr17:76091142-76091235	-9.23	-0.1099	EXOC7	ENST00000589210	In-frame
ENSG00000261116	ENST00000562834	exon_skip_337919	chr2:27445744-27445843	-10.03	-0.1791	IFT172	ENST00000260570	In-frame
ENSG00000261116	ENST00000562834	exon_skip_368285	chr22:29329711-29329720	-4.94	-2.4700	AP1B1	ENST00000357586,ENST00000405198	In-frame
ENSG00000261116	ENST00000562834	exon_skip_380242	chr3:186784961-186785101	-10.88	-0.1451	EIF4A2	ENST00000323963	Frame-shift
ENSG00000261116	ENST00000562834	exon_skip_515330	chrX:65524563-65524614	-8.81	-0.2002	LAS1L	ENST00000374811	In-frame
ENSG00000261116	ENST00000562834	exon_skip_357772	chr20:47659398-47659452	-8.29	-0.1658	SULF2	ENST00000359930,ENST00000484875	In-frame
ENSG00000261116	ENST00000562834	exon_skip_305632	chr19:35262545-35262692	-12.72	-0.1026	LSR	ENST00000361790	In-frame
ENSG00000261116	ENST00000562834	exon_skip_499542	chr9:128247923-128247935	-4.21	-0.6014	DNM1	ENST00000372923	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for RP3-523K23.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000261116	ENSG00000069956	MAPK6	BLCA,CESC,COAD,ESCA,HNSC,PAAD	CESC
ENSG00000261116	ENSG00000075651	PLD1	BLCA,CESC,CHOL,ESCA,TGCT,THYM	CESC
ENSG00000261116	ENSG00000077713	SLC25A43	BLCA,CESC,CHOL,ESCA,PAAD,STAD,TGCT,THYM	CESC
ENSG00000261116	ENSG00000082269	FAM135A	BLCA,CESC,CHOL,COAD,PAAD,STAD,TGCT,UCEC	CHOL
ENSG00000261116	ENSG00000096696	DSP	BLCA,CESC,CHOL,ESCA,HNSC,TGCT,THYM,UCS	CESC
ENSG00000261116	ENSG00000101311	FERMT1	BLCA,BRCA,CESC,CHOL,PAAD,TGCT,THYM	CESC,CHOL
ENSG00000261116	ENSG00000101384	JAG1	BLCA,CESC,CHOL,ESCA,PAAD,STAD,TGCT,THYM	CHOL
ENSG00000261116	ENSG00000101935	AMMECR1	BLCA,CESC,CHOL,ESCA,HNSC,PAAD,STAD,UCEC	CESC,UCEC
ENSG00000261116	ENSG00000104413	ESRP1	BLCA,CESC,CHOL,COAD,ESCA,HNSC,PAAD,READ,STAD,THYM,UCS	CESC,CHOL
ENSG00000261116	ENSG00000104881	PPP1R13L	BLCA,CESC,CHOL,ESCA,PAAD,STAD,TGCT,THYM,UCS	CESC,CHOL
ENSG00000261116	ENSG00000104892	KLC3	BLCA,CESC,CHOL,ESCA,THYM	CESC,CHOL
ENSG00000261116	ENSG00000112378	PERP	BLCA,BRCA,CESC,CHOL,ESCA,HNSC,PAAD,STAD,TGCT,THYM,UCS	CESC
ENSG00000261116	ENSG00000123892	RAB38	BLCA,CESC,CHOL,ESCA,TGCT,THYM	CESC,CHOL
ENSG00000261116	ENSG00000126391	FRMD8	BLCA,CESC,CHOL,ESCA,PAAD,THYM	CESC,CHOL
ENSG00000261116	ENSG00000134504	KCTD1	BLCA,CESC,CHOL,ESCA,PAAD,TGCT,THYM,UCS	CESC,CHOL
ENSG00000261116	ENSG00000134762	DSC3	BLCA,BRCA,CESC,ESCA,HNSC	CESC
ENSG00000261116	ENSG00000137269	LRRC1	BLCA,CESC,CHOL,COAD,HNSC,PAAD,READ,STAD,TGCT,THYM,UCS	CESC,CHOL
ENSG00000261116	ENSG00000137699	TRIM29	BLCA,CESC,ESCA,THYM,UCS	CESC
ENSG00000261116	ENSG00000140950	MEAK7	BLCA,BRCA,CESC,CHOL,ESCA,PAAD,TGCT	CHOL
ENSG00000261116	ENSG00000143061	IGSF3	BLCA,CESC,CHOL,ESCA,THYM	CESC,CHOL
ENSG00000261116	ENSG00000153294	ADGRF4	BLCA,CESC,ESCA,HNSC,READ	CESC
ENSG00000261116	ENSG00000163472	TMEM79	BLCA,CESC,CHOL,ESCA,HNSC,TGCT	CESC,CHOL
ENSG00000261116	ENSG00000164687	FABP5	BLCA,CESC,ESCA,HNSC,TGCT	CESC
ENSG00000261116	ENSG00000165474	GJB2	BLCA,CESC,ESCA,TGCT,THYM	CESC
ENSG00000261116	ENSG00000168143	FAM83B	BLCA,BRCA,CESC,CHOL,COAD,ESCA,HNSC,KICH,PAAD,READ,STAD,THCA,THYM	CESC,CHOL
ENSG00000261116	ENSG00000173801	JUP	BLCA,CESC,CHOL,HNSC,PAAD,THYM,UCS	CESC,CHOL
ENSG00000261116	ENSG00000176597	B3GNT5	BLCA,CESC,COAD,ESCA,PAAD,UCS	CESC
ENSG00000261116	ENSG00000185479	KRT6B	BLCA,BRCA,CESC,ESCA,HNSC,TGCT	CESC
ENSG00000261116	ENSG00000186847	KRT14	BLCA,CESC,ESCA,HNSC,TGCT	CESC
ENSG00000261116	ENSG00000189280	GJB5	BLCA,CESC,ESCA,HNSC,STAD,TGCT,THYM	CESC
ENSG00000261116	ENSG00000196754	S100A2	BLCA,CESC,ESCA,TGCT,UCS	CESC
ENSG00000261116	ENSG00000205420	KRT6A	BLCA,CESC,ESCA,HNSC,TGCT	CESC
ENSG00000261116	ENSG00000116679	IVNS1ABP	BRCA,CHOL,PAAD,READ,TGCT,UCS	CHOL
ENSG00000261116	ENSG00000159166	LAD1	BRCA,CESC,CHOL,ESCA,HNSC,PAAD,STAD,TGCT,UCS	BRCA,CESC,CHOL
ENSG00000261116	ENSG00000163191	S100A11	BRCA,CHOL,ESCA,PAAD,TGCT	BRCA,CHOL
ENSG00000261116	ENSG00000167553	TUBA1C	BRCA,CESC,ESCA,HNSC,PAAD	BRCA,CESC
ENSG00000261116	ENSG00000181467	RAP2B	BRCA,CESC,ESCA,HNSC,PAAD,THYM,UCEC	CESC
ENSG00000261116	ENSG00000183814	LIN9	BRCA,CHOL,COAD,PAAD,STAD	BRCA,CHOL
ENSG00000261116	ENSG00000006555	TTC22	CESC,CHOL,PAAD,TGCT,THYM	CESC,CHOL
ENSG00000261116	ENSG00000012211	PRICKLE3	CESC,CHOL,ESCA,PAAD,TGCT,THYM	CESC
ENSG00000261116	ENSG00000050327	ARHGEF5	CESC,CHOL,ESCA,PAAD,STAD,TGCT,THYM,UCS	CESC
ENSG00000261116	ENSG00000084733	RAB10	CESC,COAD,ESCA,HNSC,PAAD,STAD	CESC
ENSG00000261116	ENSG00000100304	TTLL12	CESC,CHOL,ESCA,PAAD,THYM	CESC
ENSG00000261116	ENSG00000102471	NDFIP2	CESC,PAAD,STAD,TGCT,THYM,UCEC	CESC
ENSG00000261116	ENSG00000114209	PDCD10	CESC,CHOL,COAD,ESCA,PAAD,UCS	CESC
ENSG00000261116	ENSG00000116489	CAPZA1	CESC,CHOL,COAD,ESCA,STAD,UCEC	CESC
ENSG00000261116	ENSG00000121579	NAA50	CESC,COAD,ESCA,STAD,UCEC	CESC
ENSG00000261116	ENSG00000124466	LYPD3	CESC,ESCA,HNSC,READ,TGCT,UCS	CESC
ENSG00000261116	ENSG00000136830	NIBAN2	CESC,PAAD,TGCT,THYM,UCS	CESC
ENSG00000261116	ENSG00000139433	GLTP	CESC,ESCA,HNSC,KICH,TGCT	CESC
ENSG00000261116	ENSG00000143367	TUFT1	CESC,CHOL,ESCA,HNSC,PAAD	CESC,CHOL
ENSG00000261116	ENSG00000163629	PTPN13	CESC,CHOL,ESCA,READ,THYM,UCEC	CHOL
ENSG00000261116	ENSG00000164924	YWHAZ	CESC,CHOL,ESCA,HNSC,PAAD,STAD,UCEC	CHOL
ENSG00000261116	ENSG00000164930	FZD6	CESC,CHOL,ESCA,TGCT,THYM	CESC,CHOL
ENSG00000261116	ENSG00000171517	LPAR3	CESC,CHOL,ESCA,THYM,UCS	CESC,CHOL
ENSG00000261116	ENSG00000175707	KDF1	CESC,CHOL,PAAD,TGCT,THYM,UCS	CESC
ENSG00000261116	ENSG00000180921	FAM83H	CESC,CHOL,ESCA,PAAD,STAD,TGCT,THYM,UCS	CESC,CHOL
ENSG00000261116	ENSG00000183943	PRKX	CESC,CHOL,ESCA,THYM,UCS	CESC,CHOL
ENSG00000261116	ENSG00000184292	TACSTD2	CESC,CHOL,ESCA,PAAD,READ,TGCT,THYM,UCS	CESC,CHOL
ENSG00000261116	ENSG00000184574	LPAR5	CESC,ESCA,HNSC,PAAD,TGCT	CESC
ENSG00000261116	ENSG00000188112	C6orf132	CESC,CHOL,PAAD,READ,UCS	CESC,CHOL
ENSG00000261116	ENSG00000005001	PRSS22	CHOL,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000014216	CAPN1	CHOL,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000076554	TPD52	CHOL,COAD,READ,STAD,UCEC	UCEC
ENSG00000261116	ENSG00000079691	CARMIL1	CHOL,COAD,PAAD,STAD,TGCT,THYM,UCEC,UCS	CHOL,UCEC
ENSG00000261116	ENSG00000108091	CCDC6	CHOL,COAD,PAAD,THYM,UCS	CHOL
ENSG00000261116	ENSG00000111261	MANSC1	CHOL,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000124429	POF1B	CHOL,COAD,PAAD,STAD,TGCT	CHOL
ENSG00000261116	ENSG00000125731	SH2D3A	CHOL,PAAD,THYM,UCEC,UCS	CHOL,UCEC
ENSG00000261116	ENSG00000125733	TRIP10	CHOL,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000132698	RAB25	CHOL,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000134709	HOOK1	CHOL,COAD,TGCT,THYM,UCEC,UCS	UCEC
ENSG00000261116	ENSG00000137845	ADAM10	CHOL,COAD,READ,STAD,UCEC	CHOL
ENSG00000261116	ENSG00000140832	MARVELD3	CHOL,COAD,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000142675	CNKSR1	CHOL,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000143153	ATP1B1	CHOL,PAAD,READ,THYM,UCS	CHOL
ENSG00000261116	ENSG00000144445	KANSL1L	CHOL,PAAD,READ,THYM,UCEC	CHOL
ENSG00000261116	ENSG00000163235	TGFA	CHOL,ESCA,PAAD,THYM,UCS	CHOL
ENSG00000261116	ENSG00000164171	ITGA2	CHOL,PAAD,TGCT,THYM,UCEC,UCS	CHOL
ENSG00000261116	ENSG00000164695	CHMP4C	CHOL,KICH,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000166012	TAF1D	CHOL,COAD,PAAD,STAD,UCEC	CHOL
ENSG00000261116	ENSG00000171219	CDC42BPG	CHOL,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000172197	MBOAT1	CHOL,COAD,PAAD,STAD,THYM,UCS	CHOL
ENSG00000261116	ENSG00000176834	VSIG10	CHOL,COAD,PAAD,READ,STAD,THYM,UCS	CHOL
ENSG00000261116	ENSG00000177917	ARL6IP6	CHOL,ESCA,PAAD,THYM,UCS	CHOL
ENSG00000261116	ENSG00000197324	LRP10	CHOL,PAAD,TGCT,THYM,UCS	CHOL
ENSG00000261116	ENSG00000197930	ERO1A	CHOL,ESCA,PAAD,READ,STAD,UCEC,UCS	UCEC
ENSG00000261116	ENSG00000111816	FRK	COAD,PAAD,READ,STAD,UCEC	UCEC
ENSG00000261116	ENSG00000272398	CD24	COAD,PAAD,READ,TGCT,UCEC	UCEC
ENSG00000261116	ENSG00000135525	MAP7	HNSC,PAAD,TGCT,THYM,UCEC,UCS	UCEC

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000261116	ENST00000562834	MTFR1L	ENSG00000117640	ENST00000526894	-0.4383	202	-	CHOL,CESC
ENSG00000261116	ENST00000562834	MTFR1L	ENSG00000117640	ENST00000528624	-0.1306	1154	-	CHOL,CESC
ENSG00000261116	ENST00000562834	FBLN5	ENSG00000140092	ENST00000557570	-0.1069	1	-	CHOL,CESC,UCEC,LUSC,BRCA,LUAD

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000261116.1	ENST00000562834.1	98	82	378

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential