 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SLIRP | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000260804 | ENST00000562038 | exon_skip_4279 | chr1:36174897-36175008 | -13.29 | -0.1564 | MAP7D1 | ENST00000373151 | In-frame | | ENSG00000260804 | ENST00000562038 | exon_skip_27178 | chr1:53233541-53233652 | -11.98 | -0.1099 | MAGOH | ENST00000371470 | In-frame | | ENSG00000260804 | ENST00000562038 | exon_skip_90104 | chr12:10709907-10710114 | -25.27 | -0.1381 | YBX3 | ENST00000228251 | In-frame | | ENSG00000260804 | ENST00000562038 | exon_skip_353172 | chr20:58898940-58898985 | -12.41 | -0.8864 | GNAS | ENST00000371085,ENST00000371100 | In-frame | | ENSG00000260804 | ENST00000562038 | exon_skip_517627 | chrX:154357250-154357274 | -7.57 | -0.4453 | FLNA | ENST00000369850 | In-frame | | ENSG00000260804 | ENST00000562038 | exon_skip_84898 | chr12:62566013-62566031 | -5.17 | -0.3231 | MON2 | ENST00000393630 | In-frame | | ENSG00000260804 | ENST00000562038 | exon_skip_48327 | chr10:26771074-26771089 | -7.36 | -0.8178 | ABI1 | ENST00000376142 | In-frame | | ENSG00000260804 | ENST00000562038 | exon_skip_460899 | chr6:85538837-85538864 | -6.26 | -0.2845 | SNX14 | ENST00000314673 | In-frame | | ENSG00000260804 | ENST00000562038 | exon_skip_381461 | chr3:12902772-12902822 | -9.55 | -0.2513 | IQSEC1 | ENST00000273221 | Frame-shift | | ENSG00000260804 | ENST00000562038 | exon_skip_89597 | chr12:6672349-6672532 | -21.99 | -0.1301 | ZNF384 | ENST00000361959,ENST00000396801 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000260804 | ENST00000562038 | exon_skip_81540 | chr12:42384939-42384996 | -11.54 | -0.2098 | PPHLN1 | ENST00000395568 | In-frame | | ENSG00000260804 | ENST00000562038 | exon_skip_361485 | chr21:29008239-29008307 | -11.22 | -0.1781 | RWDD2B | ENST00000493196 | Frame-shift | | ENSG00000260804 | ENST00000562038 | exon_skip_111863 | chr14:23565815-23565892 | -15.46 | -0.2534 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000260804 | ENST00000562038 | exon_skip_132355 | chr16:1786756-1786955 | -23.11 | -0.1210 | NUBP2 | ENST00000262302 | Frame-shift | | ENSG00000260804 | ENST00000562038 | exon_skip_504627 | chr9:83973901-83973973 | -14.00 | -0.3590 | HNRNPK | ENST00000351839,ENST00000360384 | In-frame |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216219340-216219422 | 187.00 | -78.03 | 87 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216218760-216218849 | 183.00 | -86.76 | 82 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216218841-216218931 | 182.00 | -75.23 | 91 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216218437-216218528 | 181.00 | -86.87 | 74 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216220007-216220096 | 178.00 | -88.62 | 94 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216219169-216219247 | 174.00 | -80.55 | 76 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216217828-216217908 | 171.00 | -87.31 | 75 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216219867-216219955 | 169.00 | -78.41 | 85 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216217704-216217803 | 168.00 | -78.82 | 98 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216218354-216218440 | 166.00 | -74.40 | 87 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216218105-216218197 | 163.00 | -74.13 | 91 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216218663-216218757 | 160.00 | -80.06 | 89 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216217476-216217559 | 159.00 | -77.32 | 86 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216219777-216219876 | 159.00 | -76.81 | 95 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216218519-216218611 | 157.00 | -80.93 | 90 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216217982-216218066 | 154.00 | -66.62 | 79 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216217155-216217247 | 153.00 | -76.48 | 90 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216219075-216219156 | 153.00 | -72.02 | 78 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216218922-216219006 | 151.00 | -62.12 | 83 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216217046-216217122 | 149.00 | -81.89 | 77 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216219506-216219580 | 145.00 | -66.85 | 80 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216219677-216219760 | 142.00 | -73.77 | 85 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216220091-216220174 | 141.00 | -67.59 | 82 | NA | | ENSG00000260804 | hsa-mir-3614 | ENST00000562038 | chr2:216217582-216217676 | 140.00 | -68.30 | 89 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216219360-216219438 | 186.00 | -71.13 | 82 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216219181-216219256 | 184.00 | -72.16 | 79 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216217136-216217223 | 180.00 | -74.36 | 82 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216217321-216217407 | 180.00 | -72.52 | 85 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216217730-216217825 | 172.00 | -81.41 | 94 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216218390-216218482 | 169.00 | -67.66 | 89 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216217986-216218068 | 167.00 | -64.06 | 77 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216219798-216219886 | 162.00 | -75.67 | 87 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216218691-216218760 | 160.00 | -74.25 | 77 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216218982-216219056 | 156.00 | -64.30 | 79 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216219530-216219616 | 155.00 | -68.42 | 80 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216217863-216217952 | 152.00 | -80.44 | 87 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216218763-216218850 | 152.00 | -81.67 | 82 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216218522-216218612 | 150.00 | -79.99 | 92 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216217647-216217729 | 147.00 | -70.54 | 71 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216218860-216218949 | 146.00 | -79.13 | 86 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216219049-216219131 | 144.00 | -75.91 | 84 | NA | | ENSG00000260804 | hsa-mir-193b | ENST00000562038 | chr2:216219617-216219713 | 140.00 | -70.41 | 80 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000260804 | LINC01963,hsa-mir-3614,MEGF8 | UCEC,SKCM,TGCT,CHOL,BRCA,THYM | | ENSG00000260804 | LINC01963,hsa-mir-3614,GPRASP2 | UCEC,SKCM,TGCT,BRCA,THYM | | ENSG00000260804 | LINC01963,hsa-mir-3614,WDR35 | SKCM,TGCT,CHOL,MESO,THYM | | ENSG00000260804 | LINC01963,hsa-mir-3614,UNC119B | UCEC,SKCM,TGCT,CHOL,BRCA | | ENSG00000260804 | LINC01963,hsa-mir-3614,IGIP | UCEC,CHOL,BRCA,MESO,THYM | | ENSG00000260804 | LINC01963,hsa-mir-3614,LTBP3 | UCEC,TGCT,CHOL,MESO,THYM | | ENSG00000260804 | LINC01963,hsa-mir-3614,PHLDB1 | UCEC,SKCM,TGCT,CHOL,MESO | | ENSG00000260804 | LINC01963,hsa-mir-3614,KANK2 | UCEC,TGCT,CHOL,MESO,THYM | | ENSG00000260804 | LINC01963,hsa-mir-3614,ASB1 | UCEC,SKCM,TGCT,CHOL,BRCA | | ENSG00000260804 | LINC01963,hsa-mir-3614,FAM172A | SKCM,TGCT,CHOL,BRCA,MESO | | ENSG00000260804 | LINC01963,hsa-mir-193b,LZTFL1 | HNSC,CHOL,GBM,MESO,PAAD | | ENSG00000260804 | LINC01963,hsa-mir-193b,ZNF25 | HNSC,TGCT,CHOL,GBM,PAAD | | ENSG00000260804 | LINC01963,hsa-mir-193b,SYNGR1 | HNSC,TGCT,CHOL,GBM,PAAD | | ENSG00000260804 | LINC01963,hsa-mir-193b,TSPOAP1 | TGCT,CHOL,GBM,MESO,PAAD | | ENSG00000260804 | LINC01963,hsa-mir-193b,USP27X | HNSC,TGCT,CHOL,GBM,MESO,PAAD | | ENSG00000260804 | LINC01963,hsa-mir-193b,KAT14 | HNSC,CHOL,GBM,MESO,PAAD | | ENSG00000260804 | LINC01963,hsa-mir-193b,MADD | HNSC,TGCT,CHOL,GBM,PAAD | | ENSG00000260804 | LINC01963,hsa-mir-193b,BTBD9 | HNSC,CHOL,GBM,MESO,PAAD |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000260804.3 | ENST00000562038.1 | 61 | 182 | 0 |
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