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lncRNA: ENSG00000260793

Summary for RP5-882C2.2

Gene summary

Gene information	Ensembl ID	ENSG00000260793
	Gene symbol	RP5-882C2.2
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP5-882C2.2

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000260793	9.816373e+01	1.822652e+00	3.441755e-01	5.295707e+00	1.190000e-07	9.290000e-07	UP	CHOL
ENSG00000260793	1.659685e+02	1.201544e+00	2.033489e-01	5.908779e+00	3.450000e-09	2.210000e-08	UP	KIRP
ENSG00000260793	1.025904e+02	1.029132e+00	1.732786e-01	5.939175e+00	2.860000e-09	1.660000e-08	UP	UCEC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000260793	3.132408e-01	5.538942e-03	ACC	1.661683e-02
ENSG00000260793	4.353711e-01	2.798511e-03	CHOL	4.002632e-03

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lncRNA-Protein interaction for RP5-882C2.2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000132780	NASP	105.0	95.4448	P49321	Epi	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000280789	PAGR1	13.9	93.4806	Q9BTK6	Epi	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000157212	PAXIP1	77.39	93.1079	Q6ZW49	Epi	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000156860	FBRS	9.58	90.0751	Q9HAH7	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000130254	SAFB2	97.2	95.9821	Q14151	TF,RBP	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000105127	AKAP8	86.5	91.3794	O43823	TF	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000197857	ZNF44	28.33	94.2692	P15621	TF	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000144161	ZC3H8	10.25	91.4657	Q8N5P1	TF,RBP	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000130254	SAFB2	97.2	95.8944	Q14151	TF,RBP	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000004534	RBM6	95.98	92.4131	P78332	RBP	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000137776	SLTM	84.05	96.8163	Q9NWH9	RBP	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000100650	SRSF5	52.04	91.4684	Q13243	RBP	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000124193	SRSF6	43.27	93.8946	Q13247	RBP	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000116350	SRSF4	30.31	92.8371	Q08170	RBP	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000167978	SRRM2	28.25	96.7098	Q9UQ35	RBP	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000144161	ZC3H8	10.25	91.0495	Q8N5P1	TF,RBP	NA
ENSG00000260793	ENST00000563394	RP5-882C2.2	ENSG00000161547	SRSF2	8.95	90.5031	Q01130	RBP	NA

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lncRNA-DNA interaction for RP5-882C2.2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARHGEF1,GSDMB,B3GNTL1,ARL16,VAMP1,EPOR,TCEA2,MFSD8,KRT10,ABHD17A,TMEM234,CIRBP,PET100,RNF166,MZF1,C1orf56,TTC31,SIRT3,MAPK8IP3,TMUB1,SUGP2,PPP2R3B,N4BP2L2,BCS1L,DMTF1,MKNK1,CTU1,ACD,UNKL,DPP7,PIGG,LMBR1L,GPCPD1,TRAPPC12,ULK3,IRAK4,VMP1,CENATAC,NPEPL1,WDR5B,SNRPA,SMUG1,SAFB2,KCTD13,MSANTD2,TUBGCP6,CCDC14,CHKA,CLK4,C6orf136,DENND1C,ZBED5,EIF2B5,ATXN7L3,NDUFA3,CD37,INPP5K,RECQL4,TTC14,SLC2A11,GATD1,SPRN,SUGP1,TAZ,SPG7,NAA80,SIGIRR,SRSF4,BRICD5,SNX11,USE1,PPIP5K1,CLCN6,ECHDC2,OGT,RCCD1,ASIC3,SCML1,RAB4B,CLK2,MYEF2,TARBP2,ILKAP,MPLKIP,POLG2,DHX34,RING1,CHKB,METTL17,CPSF7,BBIP1,TRIM11,DHX58,SLC12A9,WDR83,OSGEP,USF1,ACAD10,CTC1,CLK1,MRRF,GABPB1,RABL2A,NASP,RPS6KB2,DHPS,RPAIN,OFD1,ACYP1,ENO3,SLC25A29,FCHSD1,CC2D1B,CFAP298,MIS12,GMIP,HGS,ANO8,PFDN6,NAPB,C3orf62,CYSRT1,YJU2,USP35,C19orf54,NDUFA2,ORMDL1,MIIP,LPAR2,COQ6,C12orf73,DDX51,DONSON,AGER,ESS2,SPOUT1,SRSF2,C1orf52,CUL9,CDK11A,TECPR1,FBXW4,PASK,TSEN54,LRRC37B,ATG4B,CCDC191,LMNTD2,DCUN1D2,NXF1,SRCIN1,PAN2,FAM229A,SLFN13,CCS,SGTA,CDKN2D,SLC25A16,GIGYF1,HMGN3,FAM193B,SLC25A39,NDUFB1,THEM4,PNKP,ABCA7,TMCO6,NOL3,SLC25A28,STK25,COG7,SEC31B,ZFC3H1,MBTD1,KLHL17,ARHGAP33,ELOF1,DNASE1,SEPSECS,HEXD,DDX42,VCPKMT,SCNN1D,EIF4A1,CCDC24,TOR2A,MRPS25,CCDC12,POLM,DECR2,ERCC5,IQCC,FAAP100,PYROXD2,TEDC2,FANCL,ILF3,GLI4,DNAJC4,CDK13,LENG8,NMRAL1,SH2B1,PHKA2,RANBP3,STK11,PPP1R12C,C1orf159,DDX56,DGKA,PRR3,FAM98C,NICN1,UBE2G2,INPPL1,IP6K2,PPOX,PPWD1,NPRL3,MLLT6,GPSM3,BIVM,CRLF3,C20orf96,PHF7,DDX55,ARFGAP1,BICDL2,CAPN10,AP1G2,FAM111A,BANP,THOC1,ANKMY1,TMEM175,NUBP2,GNPTG,PHF12,GPN2,TNK2,INTS11,ARHGAP27,REXO1,IZUMO4,TAMM41,NBEAL2,GDPD3,CACNB1,ZNF44,NECAB3,TMEM138,ALKBH6,NPDC1,PKD1,LTO1,TRAF1,PIDD1,METAP1D,AP5Z1,BCLAF3,TCTA,CCDC137,EMD,IFT80,ALS2CL,CEP83,NEK9,GGNBP2,NAA10,FBXO44,RMND5B,UBN2,METTL23,ANKDD1A,EXD3,PPP2R5B,NFKBID,C17orf75,LRIG2,TBC1D10B,P4HTM,ABHD18,PCED1A,NRBP2,SLX4,PGP,NBPF11,LMF1,DYNLT2,BRF1,ACIN1,ZC3H8,PPP1R3F,GRIPAP1,MAU2,THOC6,POLRMT,ANKRD49,PAXBP1,LEMD2,PQBP1,COA1,TADA2A,FNBP4,DENND6B,CCHCR1,PRMT7,LRRC56,INPP5E,PHF11,RSRP1,IL11RA,SGF29,NEK8,SF3A2,MBD3,USP40,SERF2,CRACR2B,CLEC2D,FIZ1,TRPT1,TATDN2,LTB4R,ATP13A1,KIFC2,VPS4A,NIT1,HEMK1,UPF3B,ROGDI,RABEP2,IFT20,TMEM199,OGFR,PTOV1,PCSK4,NCKAP5L,GSAP,RAB11FIP3,DDX11,FRS3,NDUFAF5,C2orf68,FBXL8,ZSWIM8,GK5,NDUFAF7,RBM6,KRTCAP2,ZNF862,IDUA,TMEM134,POP5,BTBD6,CCDC142,ZDHHC24,PAXIP1,MYL5,NLRP1,TNFRSF14,EPM2AIP1,UCKL1,SCAND1,SYNGAP1,PSME3IP1,UBXN11,EME2,PTCD1,PPCDC,KHDC4,DCAF15,CROCC,PLXNB1,CERS5,RSAD1,EP400P1,USF2,PNISR,GEN1,SFPQ,RALY,AMT,FHOD1,ACAP3,LRRC27,AMH,CARD8,MVD,FAM3A,ATP5IF1,LRRC14,NISCH,BLOC1S1,CLCN7,ATAT1,IFFO1,DUT,PLCG1,ZBTB8OS,TRMU,MYPOP,CTBP1,ANGEL2,BICRA,POMT1,ATXN7L2,ZNF598,STARD3,POC5,ARF5,ADPGK,MYSM1,CHTF18,AKAP8,CDPF1,NLGN2,FANCG,FBXO41,UBTF,MSTO1,ODAD4,TJAP1,NAT14,MKS1,C1orf35,CEP95,CCDC174,ACAP1,MTIF3,CDK5RAP1,C7orf26,FOXRED1,MARCHF9,BUD23,TBRG1,SLX4IP,NPRL2,ZCWPW1,KLHDC4,KLHDC1,CCNL2,RUNDC1,GATAD1,DCAKD,FBXO46,DMPK,CLK3,RNPC3,ANKRD10,TENT4A,INCA1,VPS9D1,RGS11,SLC25A35,MNT,GABBR1,ABCB8,BTBD19,MIEN1,ZDHHC8,MSL3,RFNG,SLC66A1,MED25,DDTL,BCAT2,SGSM3,TP53I13,MC1R,TYK2,WDR45,COQ4,KYAT1,CCNT2,OSBPL7,DHRS12,STX10,KAT2A,ARMC5,UBALD1,ACBD4,CSTF3,RBM26,PLA2G6,TMEM86B,COMTD1,ENTR1,FBXW7,RHPN1,ENDOV,COPE,MLH3,CLDN15,SETD6,FAM50A,POLI,PAQR6,PGAP2,PRPF39,ARMH1,ERMARD,KIAA0753,TRIM45,NDOR1,SRRM2,MIB2,WHRN,PARP3,PHF1,PABIR2,HDAC10,HEXIM2,CEP44,SCRN2,RNF208,HSF4,LY6G5C,ANKS3,ARGLU1,NOXA1,YJEFN3,UCK1,CCNL1,PIGQ,ANKRD54,ANKRA2,SGSM2,VMAC,TAF10,KRI1,RBM45,HSPBAP1,CRYGS,YAE1,R3HDM2,LBHD1,OGG1,PMS1,FAM160A2,EGFL8,PSMG4,ZGPAT,PBX4,TIA1,HOOK2,ZNF83,HCN3,RETREG3,TMUB2,KANSL1,NSUN6,ARFRP1,ABCD4,TRIM46,DPH1,BRAT1,PELP1,ERCC3,MEN1,DGKQ,SZT2,VPS33B,DDX5,DTX3,ZMYND19,MTG2,RNF215,THOP1,TLE5,NAT9,UBA7,LIPT1,ABHD14A,PROCA1,CRAMP1,LUC7L,KLHL22,WDR6,URGCP,PNN,COA5,LUC7L2,CCAR1,MAP2K7,C14orf93,LRSAM1,DPH7,CBX8,POU6F1,TRA2A,RNF126,NSMCE4A,CEP131,DUS1L,SH2D3C,NEURL4,PNPLA7,HINFP,PCBD2,NR2C1,BRD9,CRTC2,AMY2B,APBB3,GPS1,NRIP2,CNTROB,CYTH2,WBP1,PARP16,RBM33,NADSYN1,MOK,IMMP1L,CFAP44,LRCH4,SRRT,AGAP6,WRAP73,RELL2,GABPB2,TAF6L,ADAMTS10,TRIM66,MAPKBP1,RBM39,ODF2L,SLC26A6,SLC25A27,MRPS26,PGS1,IRF3,ZCCHC8,SERGEF,C7orf31,C7orf50,NRF1,ITFG2,RRNAD1,ZXDC,CCDC92,GAK,KAT8,INTS3,PIGL,RP11-523H20.5,CSAD,LRRC37A3,KIAA0895L,DDX39A,ARV1,NDUFAF6,ATAD3B,SAMD10,MUTYH,DCAF8,STAG3L5P-PVRIG2P-PILRB,ABCA5,PHYKPL,TMEM259,POFUT2,CACTIN,FRA10AC1,RUFY3,LIN37,OGA,ZFP69,PYCR2,NUP42,IFT27,RECQL5,PAN3,PHKG2,NARF,PMF1,SARS2,ARHGAP4,ASB6,POLR2J,LRRC75B,SWSAP1,TBC1D17,ZC3H4,SUPT7L,GRK6,CENPT,OSGEPL1,CYTH1,G6PC3,PACS2,S100PBP,TRIM3,SHC2,CFAP410,MTG1,FAM76B,ANAPC7,GTPBP3,RBM4B,TSC2,EXOG,ANAPC2,C21orf58,TAF1C,MAP3K12,TMEM143,MYO19,TEFM,TRAPPC14,ARHGAP45,SAMD1,AAAS,PIP4K2B,PRIMPOL,CAPN15,SMPD4,CXXC1,EZH1,MRNIP,SS18L1,ELMOD3,DDX17,TRIM62,GSTM2,HAUS5,SENP7,CHFR,MTRF1,RAD52,HDAC7,ARVCF,NINL,FBXL12,SDR39U1,PGGHG,TELO2,CDAN1,TMEM107,FBXL6,WSB1,TEDC1,PCYOX1L,LRRC29,AUP1,C12orf76,ANO9,FAM228B,CBLN3,WASHC1,USP21,TIGD1,KLC1,RBM10,GPS2,TRIM52,E2F4,NCBP3,PCBP4,NOL12,MTFR1L,MOSPD3,PCP2,CLASRP,TTC13,MBD6,CWC25,STK36,STAC3,TTC32,MICAL1,BAHCC1,ZMAT1,GOLGA8B,COASY,SPATA33,ACP6,DNM1,STRADA,ZNF18,GOLGA8A,EMC9,CYP2R1,PAM16,TCIRG1,SOX12,SETD4,SPIRE2,SPATA24,CARD19,TYSND1,AARSD1,GMEB2,DUSP28,RBM5,BOLA1,GHDC,NKTR,CEP162,YPEL3,SAP30BP,BCDIN3D,C19orf71,TTLL3,DOT1L,SLC25A45,RXRB,PARP6,CACNB3,C19orf18,NDUFV3,NUDT17,REX1BD,LRP5L,ASXL1,TSC1,QRICH2,SH3GLB2,DENND4B,FASTK,CYHR1,SIRT6,MAN2C1,DXO,HSPB11,USPL1,USP20,LZTR1,MRPL38,ANKRD13D,LIG1,CCDC57,RABL2B,TRAPPC2,SIRT7

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

DPH7,C14orf93,DNASE1,DGKA,CCDC88B,PMF1,NBEAL2,POC5,PGS1,PYROXD2,DGCR8,C16orf13,E2F4,EFHC1,PDDC1,RNF113A,ABCA5,STX16,HEMK1,SH3GLB2,UBA7,DGCR14,FAM73B,SETD6,URGCP,IZUMO4,TATDN2,INTS3,USF2,HIP1R,TCTE3,MAPK8IP3,MIIP,CCDC66,MZF1,TMEM134,C3orf62,ANKRD54,FAM160B2,LRRC37B,MYL5,FBXO46,STRADA,METTL22,TBKBP1,PCP2,PPCDC,NAA10,CHFR,GRIPAP1,NINL,LEMD2,FRAT1,CDK13,FAM111A,SUGP1,POLR2J,PTCD1,DGKQ,SCML1,ATG4D,CARD8,ERCC3,TYSND1,ARGLU1,AP4B1,TAZ,DCAF8,GK5,NDUFA2,YDJC,TNFRSF25,ZNF18,GGA3,ATAT1,G6PC3,COMTD1,DHPS,DMPK,CTC1,VARS2,ZMIZ2,EP400NL,SLC25A16,E4F1,KLHDC4,MLLT6,THAP7,TMEM234,COA1,RBM10,CEP131,LBHD1,AGO4,NDUFB1,MAP3K12,CLASRP,RRP7BP,SDR39U1,RAD9A,NOL3,FAM122B,CXXC1,QTRT1,C17orf75,PAXBP1,SEPSECS,ZFP2,CCDC12,ACCS,ENGASE,C2orf68,WSB1,ANGEL2,GSTM2,ATPIF1,CYTH2,COMMD3,ING5,WDR13,TAMM41,SNRPA,MAN2C1,ZC3H4,AARSD1,TECPR1,SGF29,PAN3,PCBD2,ZMYND19,COG7,TRIM11,NMRAL1,MDM4,DFNB31,TTC32,NPDC1,CCDC174,MSTO1,THOP1,COG4,C20orf196,ZMAT1,WDR60,HAUS5,KAT2A,RAD52,EID2B,TJAP1,IMMP1L,CLK2,NFKBID,TRMU,DDX17,D2HGDH,ZNF83,EVL,STAC3,PRPF3,C7orf43,ZC3H6,VPS33B,LUC7L,DOT1L,ENO3,SIN3B,UCK1,ABHD18,IQCC,RNF126,PBX4,FAM98C,GGA1,CPSF1,CCDC130,MAGEF1,FANCG,ABCD4,C21orf59,MFSD8,STK36,CCNL1,S100PBP,C19orf54,SLC25A35,POMT1,LRRC37A3,PRKRIP1,CPSF7,SLX4,ARIH2OS,RBM6,CACNB1,PPP1R12C,PNISR,RBM39,DCAF15,CDAN1,CDK5RAP1,SGSM3,FBXW7,GABPB1,VPS4A,POLRMT,GTF2H4,OSGEPL1,PLXNA3,SRRM2,ACP6,OXLD1,LPAR2,SPATA24,EPOR,SPATA25,HSPBAP1,METTL17,ELOF1,C1orf56,TIA1,RBM5,NCBP3,NICN1,GMIP,BCAT2,NME3,C9orf114,GPCPD1,IL3RA,COQ6,C7orf50,ASB6,LRRC27,CWC25,AP1G2,USF1,MPLKIP,B4GALT7,NADSYN1,ATP13A1,DNAJC4,FRA10AC1,C14orf79,TMCO6,BANP,ARHGAP4,VAMP1,INPP5K,RALGPS1,KIAA0907,SRSF5,NDUFA3,PRR14,TRAF5,MAU2,SETD4,CCDC137,CEP162,HCN3,EZH1,C19orf18,R3HDM2,ANAPC15,DPH1,BRF1,ARIH2,HSF4,TBRG1,MTRF1,NUPL2,IDUA,NUP85,EME2,ERMARD,TARBP2,CIRBP,UBTF

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP5-882C2.2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNIH1,ILRUN,ST13,PSMD1,IPO5,EIF3L,MCFD2,CAP1,CLTC,HSPA8,M6PR,SEC23A,TARS1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000260793	ENST00000563394	exon_skip_41813	chr10:68337857-68337996	-17.61	-0.1492	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_52701	chr10:97468965-97469104	-21.50	-0.1920	MMS19	ENST00000370782,ENST00000438925	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_53559	chr10:101793912-101793998	-14.80	-0.2085	OGA	ENST00000361464	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_66482	chr11:126274926-126275021	-18.23	-0.2072	FOXRED1	ENST00000263578	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_114365	chr14:74290026-74290118	-18.25	-0.2074	ABCD4	ENST00000356924	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_292904	chr17:69251746-69251866	-17.65	-0.1697	ABCA5	ENST00000392676,ENST00000588877	In-frame
ENSG00000260793	ENST00000563394	exon_skip_324294	chr2:27774423-27774530	-15.34	-0.2324	MRPL33	ENST00000296102	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_326885	chr2:74490024-74490127	-21.34	-0.2884	TTC31	ENST00000233623	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_327748	chr2:95410863-95411026	-22.59	-0.1526	FAHD2A	ENST00000233379,ENST00000447036	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_335558	chr2:240596680-240596942	-30.92	-0.1194	CAPN10	ENST00000391984	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_341860	chr2:96733518-96733601	-13.87	-0.4623	LMAN2L	ENST00000264963	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_370518	chr22:50247691-50247776	-17.27	-0.2432	HDAC10	ENST00000216271	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_374375	chr3:49675182-49675309	-18.96	-0.1593	APEH	ENST00000296456	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_377198	chr3:123130479-123130616	-21.71	-0.1840	PDIA5	ENST00000316218	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_382458	chr3:38131595-38131638	-11.97	-0.7041	ACAA1	ENST00000333167	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_387016	chr3:121788283-121788432	-16.12	-0.1127	IQCB1	ENST00000310864	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_442657	chr5:74730259-74730398	-13.27	-0.1368	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_470226	chr7:103307595-103307708	-11.62	-0.1509	PMPCB	ENST00000249269	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_511212	chrX:71555189-71555385	-21.18	-0.1109	OGT	ENST00000373719	Frame-shift
ENSG00000260793	ENST00000563394	exon_skip_374581	chr3:50110378-50110463	-14.22	-0.2452	RBM5	ENST00000347869	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP5-882C2.2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000260793	ENSG00000004777	ARHGAP33	ACC,BRCA,CESC,CHOL,DLBC,GBM,KICH,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,THCA,THYM	CHOL
ENSG00000260793	ENSG00000006025	OSBPL7	ACC,BLCA,BRCA,CHOL,DLBC,GBM,KIRP,LGG,LUAD,LUSC,PCPG,TGCT,THCA,THYM,UCEC	CHOL,KIRP
ENSG00000260793	ENSG00000010295	IFFO1	ACC,CHOL,GBM,KICH,KIRP,PAAD,PCPG,THYM	KIRP
ENSG00000260793	ENSG00000056558	TRAF1	ACC,CHOL,GBM,KIRP,OV,PAAD	CHOL
ENSG00000260793	ENSG00000100429	HDAC10	ACC,BLCA,BRCA,CHOL,GBM,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC	KIRP
ENSG00000260793	ENSG00000102125	TAZ	ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,KICH,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS	KIRP
ENSG00000260793	ENSG00000104899	AMH	ACC,CHOL,GBM,LGG,PAAD,TGCT,UCEC	CHOL,UCEC
ENSG00000260793	ENSG00000105486	LIG1	ACC,CHOL,GBM,KIRP,PAAD,THCA,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000106976	DNM1	ACC,KIRP,PAAD,TGCT,UCS	KIRP
ENSG00000260793	ENSG00000107281	NPDC1	ACC,BRCA,CHOL,LGG,PAAD,TGCT,THCA,UCEC,UCS	CHOL
ENSG00000260793	ENSG00000108773	KAT2A	ACC,BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA,UCEC,UCS	KIRP
ENSG00000260793	ENSG00000115257	PCSK4	ACC,BRCA,GBM,KIRP,LGG,LUAD,PAAD,PCPG,THCA,THYM	KIRP
ENSG00000260793	ENSG00000123136	DDX39A	ACC,CHOL,KICH,KIRP,PRAD,THCA,THYM	CHOL
ENSG00000260793	ENSG00000127586	CHTF18	ACC,BLCA,BRCA,CHOL,GBM,KICH,KIRP,LGG,LUAD,LUSC,PCPG,PRAD,THCA,THYM,UCS	CHOL,KIRP
ENSG00000260793	ENSG00000132522	GPS2	ACC,BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCS	KIRP
ENSG00000260793	ENSG00000135722	FBXL8	ACC,BLCA,BRCA,CHOL,ESCA,KICH,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,THCA,UCEC	KIRP
ENSG00000260793	ENSG00000138834	MAPK8IP3	ACC,BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,TGCT,THCA,THYM,UCEC,UCS	CHOL,KIRP
ENSG00000260793	ENSG00000141858	SAMD1	ACC,CHOL,KICH,KIRP,LGG,THYM	CHOL
ENSG00000260793	ENSG00000148341	SH3GLB2	ACC,BLCA,BRCA,CESC,CHOL,GBM,KIRP,PAAD,TGCT,THCA,THYM	CHOL
ENSG00000260793	ENSG00000160781	PAQR6	ACC,BLCA,BRCA,ESCA,KIRP,LUAD,LUSC,PAAD,PRAD,TGCT,UCEC	KIRP,UCEC
ENSG00000260793	ENSG00000162062	TEDC2	ACC,CHOL,GBM,PRAD,THYM	CHOL
ENSG00000260793	ENSG00000162572	SCNN1D	ACC,BRCA,CHOL,GBM,KIRP,LGG,LUAD,PAAD,PCPG,PRAD,TGCT,THYM,UCS	KIRP
ENSG00000260793	ENSG00000163013	FBXO41	ACC,CHOL,DLBC,LUAD,LUSC,PAAD,THYM	CHOL
ENSG00000260793	ENSG00000167604	NFKBID	ACC,CHOL,KIRP,LAML,LUAD,PAAD,STAD,THYM	KIRP
ENSG00000260793	ENSG00000167615	LENG8	ACC,BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,THCA,UCS	CHOL
ENSG00000260793	ENSG00000167702	KIFC2	ACC,BLCA,BRCA,CHOL,GBM,KICH,KIRP,LAML,PAAD,TGCT,THCA	CHOL,KIRP
ENSG00000260793	ENSG00000168096	ANKS3	ACC,BLCA,BRCA,CHOL,ESCA,GBM,KICH,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,UCEC	CHOL,KIRP
ENSG00000260793	ENSG00000169992	NLGN2	ACC,GBM,KIRP,LGG,TGCT,UCS	KIRP
ENSG00000260793	ENSG00000174943	KCTD13	ACC,BLCA,BRCA,CHOL,DLBC,KICH,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA	CHOL,KIRP
ENSG00000260793	ENSG00000175265	GOLGA8A	ACC,BLCA,CHOL,DLBC,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,STAD,TGCT,THCA,UCEC,UCS	KIRP
ENSG00000260793	ENSG00000175455	CCDC14	ACC,BLCA,CESC,CHOL,GBM,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,TGCT,THCA,THYM,UCS	KIRP
ENSG00000260793	ENSG00000182685	BRICD5	ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,KICH,KIRP,LGG,LUAD,LUSC,OV,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC	UCEC
ENSG00000260793	ENSG00000183397	C19orf71	ACC,BLCA,CHOL,DLBC,LUSC,PAAD,PRAD,THCA	CHOL
ENSG00000260793	ENSG00000185189	NRBP2	ACC,BLCA,GBM,KIRP,LGG,THCA	KIRP
ENSG00000260793	ENSG00000185347	TEDC1	ACC,CHOL,GBM,KIRP,LAML,LUAD,PRAD,THCA,THYM	KIRP
ENSG00000260793	ENSG00000185482	STAC3	ACC,CHOL,KIRP,LAML,OV,PCPG,THYM	KIRP
ENSG00000260793	ENSG00000186166	CENATAC	ACC,BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,THCA,THYM,UCEC,UCS	KIRP
ENSG00000260793	ENSG00000186395	KRT10	ACC,CHOL,KIRP,LGG,PAAD,PRAD,THCA	KIRP
ENSG00000260793	ENSG00000196123	KIAA0895L	ACC,BLCA,BRCA,DLBC,GBM,KICH,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA,THYM,UCEC,UCS	KIRP
ENSG00000260793	ENSG00000197774	EME2	ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,KICH,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,TGCT,THCA,UCEC,UCS	CHOL,KIRP
ENSG00000260793	ENSG00000204149	AGAP6	ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,KIRP,LGG,PAAD,STAD,THCA,THYM,UCEC,UCS	KIRP
ENSG00000260793	ENSG00000204305	AGER	ACC,BLCA,BRCA,CHOL,DLBC,GBM,KIRP,LAML,LGG,PAAD,STAD,TGCT,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000204681	GABBR1	ACC,BRCA,DLBC,KIRP,LAML,PAAD,THCA	KIRP
ENSG00000260793	ENSG00000213199	ASIC3	ACC,CHOL,GBM,LAML,LGG	CHOL
ENSG00000260793	ENSG00000214021	TTLL3	ACC,BLCA,BRCA,CHOL,DLBC,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,TGCT,THCA,THYM,UCEC,UCS	CHOL,KIRP
ENSG00000260793	ENSG00000215252	GOLGA8B	ACC,BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,STAD,TGCT,THCA,THYM,UCEC,UCS	KIRP
ENSG00000260793	ENSG00000215375	MYL5	ACC,BLCA,BRCA,CESC,CHOL,ESCA,GBM,KICH,KIRP,LAML,LGG,LUAD,LUSC,PRAD,THCA,UCEC	KIRP
ENSG00000260793	ENSG00000215440	NPEPL1	ACC,CHOL,DLBC,ESCA,GBM,KICH,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS	CHOL
ENSG00000260793	ENSG00000221829	FANCG	ACC,CHOL,KIRP,LGG,THYM	CHOL
ENSG00000260793	ENSG00000221978	CCNL2	ACC,BLCA,BRCA,CHOL,DLBC,GBM,KICH,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,TGCT,THCA,THYM,UCEC,UCS	KIRP
ENSG00000260793	ENSG00000240038	AMY2B	ACC,CHOL,GBM,KIRP,LGG,THCA,THYM	KIRP
ENSG00000260793	ENSG00000250067	YJEFN3	ACC,BLCA,CHOL,DLBC,ESCA,GBM,KIRP,LGG,LUSC,PAAD,PCPG,PRAD,UCS	CHOL,KIRP
ENSG00000260793	ENSG00000258839	MC1R	ACC,CHOL,ESCA,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,TGCT,THCA	CHOL,KIRP
ENSG00000260793	ENSG00000272752	STAG3L5P-PVRIG2P-PILRB	ACC,CESC,CHOL,KIRP,TGCT,THYM	KIRP
ENSG00000260793	ENSG00000275023	MLLT6	ACC,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,TGCT,THCA	CHOL
ENSG00000260793	ENSG00000278259	MYO19	ACC,CHOL,GBM,KIRP,LGG,PCPG	CHOL
ENSG00000260793	ENSG00000046651	OFD1	BLCA,CESC,CHOL,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,THCA,THYM	CHOL
ENSG00000260793	ENSG00000068885	IFT80	BLCA,CHOL,DLBC,GBM,KIRP,LUAD,PAAD,STAD,TGCT,THCA,THYM	CHOL
ENSG00000260793	ENSG00000073605	GSDMB	BLCA,CHOL,DLBC,GBM,KIRP,LGG,LUAD,LUSC,TGCT,THCA,THYM,UCS	KIRP
ENSG00000260793	ENSG00000074855	ANO8	BLCA,GBM,KIRP,LUAD,LUSC,PRAD,THCA,THYM,UCEC,UCS	UCEC
ENSG00000260793	ENSG00000104973	MED25	BLCA,BRCA,CHOL,PAAD,PRAD,THCA	CHOL
ENSG00000260793	ENSG00000115687	PASK	BLCA,BRCA,CHOL,KIRP,LUAD,LUSC,PAAD	CHOL
ENSG00000260793	ENSG00000127415	IDUA	BLCA,BRCA,CHOL,GBM,KICH,KIRP,LAML,LGG,LUAD,LUSC,PAAD,PRAD,STAD,TGCT,THCA	CHOL,KIRP
ENSG00000260793	ENSG00000130590	SAMD10	BLCA,CHOL,GBM,KIRP,LGG,PRAD,TGCT,THCA	CHOL
ENSG00000260793	ENSG00000130770	ATP5IF1	BLCA,ESCA,PAAD,PRAD,THCA,UCEC	UCEC
ENSG00000260793	ENSG00000142330	CAPN10	BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,THYM	CHOL
ENSG00000260793	ENSG00000143643	TTC13	BLCA,CHOL,DLBC,GBM,KIRP,LUAD,LUSC,TGCT,THYM	CHOL
ENSG00000260793	ENSG00000149743	TRPT1	BLCA,BRCA,CHOL,KIRP,LGG,PAAD,TGCT,THCA,THYM,UCEC	UCEC
ENSG00000260793	ENSG00000158062	UBXN11	BLCA,BRCA,CHOL,DLBC,KIRP,LAML,LUAD,LUSC,PAAD,PRAD,TGCT,THCA,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000158106	RHPN1	BLCA,BRCA,CHOL,DLBC,GBM,KIRP,PAAD,TGCT,THCA,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000159314	ARHGAP27	BLCA,CHOL,DLBC,KIRP,LAML,LUSC,OV,TGCT,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000160298	C21orf58	BLCA,CESC,CHOL,DLBC,ESCA,GBM,LGG,LUAD,LUSC,PAAD,PRAD,TGCT,THYM,UCS	CHOL
ENSG00000260793	ENSG00000160796	NBEAL2	BLCA,BRCA,CHOL,GBM,KIRP,LUSC,THYM	CHOL
ENSG00000260793	ENSG00000161328	LRRC56	BLCA,BRCA,CHOL,ESCA,KIRP,PAAD,THCA	CHOL
ENSG00000260793	ENSG00000162069	BICDL2	BLCA,BRCA,KIRP,LUAD,PRAD,THCA,UCEC	UCEC
ENSG00000260793	ENSG00000162194	LBHD1	BLCA,CESC,CHOL,DLBC,KIRP,PAAD,THYM,UCEC,UCS	KIRP
ENSG00000260793	ENSG00000167535	CACNB3	BLCA,KIRP,LUSC,PRAD,THYM	KIRP
ENSG00000260793	ENSG00000173681	BCLAF3	BLCA,CHOL,GBM,LGG,LUAD,LUSC,PAAD,PCPG,TGCT	CHOL
ENSG00000260793	ENSG00000177548	RABEP2	BLCA,BRCA,CHOL,GBM,KICH,KIRP,LUAD,LUSC,PAAD,TGCT,THCA,UCEC	CHOL
ENSG00000260793	ENSG00000177595	PIDD1	BLCA,BRCA,CHOL,ESCA,GBM,KICH,KIRP,LGG,PAAD,THCA,THYM	KIRP
ENSG00000260793	ENSG00000182173	TSEN54	BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,THCA	CHOL
ENSG00000260793	ENSG00000185101	ANO9	BLCA,BRCA,CHOL,KIRP,PAAD,TGCT	CHOL,KIRP
ENSG00000260793	ENSG00000185917	SETD4	BLCA,CHOL,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA	CHOL
ENSG00000260793	ENSG00000197948	FCHSD1	BLCA,CHOL,DLBC,GBM,KIRP,LAML,PAAD,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000198863	RUNDC1	BLCA,BRCA,CHOL,DLBC,PAAD	CHOL
ENSG00000260793	ENSG00000213139	CRYGS	BLCA,CHOL,DLBC,KIRP,PAAD,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000256525	POLG2	BLCA,BRCA,CHOL,DLBC,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,STAD,THCA,THYM	KIRP
ENSG00000260793	ENSG00000273899	NOL12	BLCA,CHOL,GBM,KICH,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA,THYM	CHOL
ENSG00000260793	ENSG00000277363	SRCIN1	BLCA,ESCA,KIRP,LUAD,PAAD,PCPG	KIRP
ENSG00000260793	ENSG00000061273	HDAC7	BRCA,CHOL,KIRP,THCA,THYM	CHOL
ENSG00000260793	ENSG00000104936	DMPK	BRCA,CHOL,DLBC,GBM,KIRP,LUSC,TGCT,THCA	CHOL
ENSG00000260793	ENSG00000125434	SLC25A35	BRCA,CESC,CHOL,DLBC,GBM,LAML,LGG,LUAD,PAAD,PCPG,THCA,THYM,UCEC	CHOL,UCEC
ENSG00000260793	ENSG00000139624	CERS5	BRCA,CHOL,LGG,PAAD,PCPG	CHOL
ENSG00000260793	ENSG00000139625	MAP3K12	BRCA,GBM,KIRP,LUAD,LUSC,PAAD,UCS	KIRP
ENSG00000260793	ENSG00000142102	PGGHG	BRCA,CHOL,GBM,KIRP,LGG,PAAD,TGCT,THCA	KIRP
ENSG00000260793	ENSG00000143258	USP21	BRCA,CHOL,DLBC,GBM,KIRP,LGG,PAAD,PCPG,TGCT,THCA,UCS	CHOL
ENSG00000260793	ENSG00000144134	RABL2A	BRCA,CESC,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,THCA,THYM	CHOL
ENSG00000260793	ENSG00000159239	RP11-523H20.5	BRCA,CHOL,GBM,KIRP,PAAD,PCPG,TGCT	CHOL
ENSG00000260793	ENSG00000186088	GSAP	BRCA,CHOL,KIRP,PAAD,STAD,THCA	KIRP
ENSG00000260793	ENSG00000205593	DENND6B	BRCA,CHOL,GBM,KIRP,PAAD,PRAD,TGCT,UCS	CHOL
ENSG00000260793	ENSG00000213903	LTB4R	BRCA,CHOL,DLBC,GBM,KIRP,LAML,LGG,LUAD,PAAD,PRAD,TGCT,THCA,UCEC	KIRP
ENSG00000260793	ENSG00000062716	VMP1	CESC,KIRP,LAML,LUAD,LUSC	KIRP
ENSG00000260793	ENSG00000154760	SLFN13	CESC,CHOL,KIRP,LUAD,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000005075	POLR2J	CHOL,KICH,KIRP,LAML,PAAD,THCA	KIRP
ENSG00000260793	ENSG00000064547	LPAR2	CHOL,KIRP,LAML,LGG,THYM	CHOL
ENSG00000260793	ENSG00000065357	DGKA	CHOL,DLBC,KIRP,LGG,LUSC,THYM,UCS	CHOL,KIRP
ENSG00000260793	ENSG00000069493	CLEC2D	CHOL,DLBC,GBM,KIRP,LGG,LUAD,OV,PAAD,TGCT,THYM	KIRP
ENSG00000260793	ENSG00000071859	FAM50A	CHOL,KICH,KIRP,LAML,LGG	KIRP
ENSG00000260793	ENSG00000072609	CHFR	CHOL,GBM,KIRP,LGG,LUAD,PAAD,PCPG,THCA,THYM	KIRP
ENSG00000260793	ENSG00000076928	ARHGEF1	CHOL,GBM,KIRP,LAML,LUAD,PAAD,PCPG,TGCT,THYM	CHOL
ENSG00000260793	ENSG00000077463	SIRT6	CHOL,KICH,KIRP,LAML,LGG,LUSC,PRAD,UCEC	CHOL
ENSG00000260793	ENSG00000089639	GMIP	CHOL,LAML,PAAD,THYM,UCS	CHOL
ENSG00000260793	ENSG00000089820	ARHGAP4	CHOL,DLBC,LAML,LUAD,LUSC,PAAD,THYM,UCS	CHOL
ENSG00000260793	ENSG00000102977	ACD	CHOL,GBM,KICH,KIRP,LAML,LGG,PAAD	CHOL
ENSG00000260793	ENSG00000119640	ACYP1	CHOL,GBM,KICH,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,TGCT,THCA,THYM	CHOL
ENSG00000260793	ENSG00000122417	ODF2L	CHOL,KIRP,LUAD,TGCT,THCA,THYM	CHOL
ENSG00000260793	ENSG00000125459	MSTO1	CHOL,DLBC,GBM,KIRP,LGG	CHOL
ENSG00000260793	ENSG00000129355	CDKN2D	CHOL,KICH,LAML,PRAD,THYM	CHOL
ENSG00000260793	ENSG00000135596	MICAL1	CHOL,DLBC,GBM,KIRP,LAML,LGG,PAAD,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000135723	FHOD1	CHOL,LUAD,PAAD,THCA,UCEC,UCS	CHOL
ENSG00000260793	ENSG00000153790	C7orf31	CHOL,KIRP,PAAD,THYM,UCS	CHOL
ENSG00000260793	ENSG00000159147	DONSON	CHOL,ESCA,GBM,KIRP,LGG,PCPG,PRAD,THYM	KIRP
ENSG00000260793	ENSG00000162650	ATXN7L2	CHOL,KIRP,LUAD,LUSC,THCA,THYM	KIRP
ENSG00000260793	ENSG00000164620	RELL2	CHOL,DLBC,LAML,PAAD,THYM	CHOL
ENSG00000260793	ENSG00000166839	ANKDD1A	CHOL,GBM,LUAD,PAAD,TGCT,THCA	CHOL
ENSG00000260793	ENSG00000167523	SPATA33	CHOL,DLBC,KIRP,PAAD,THCA,THYM	CHOL
ENSG00000260793	ENSG00000167543	TP53I13	CHOL,KIRP,LAML,PAAD,THCA	KIRP
ENSG00000260793	ENSG00000169221	TBC1D10B	CHOL,GBM,KICH,KIRP,LGG,THCA	CHOL
ENSG00000260793	ENSG00000180448	ARHGAP45	CHOL,KICH,KIRP,LAML,PAAD,THYM	KIRP
ENSG00000260793	ENSG00000185158	LRRC37B	CHOL,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,THYM	CHOL,KIRP
ENSG00000260793	ENSG00000161960	EIF4A1	DLBC,GBM,KIRP,LGG,LUAD,LUSC,PAAD,UCS	KIRP
ENSG00000260793	ENSG00000167525	PROCA1	DLBC,GBM,KICH,KIRP,LGG,THYM,UCS	KIRP
ENSG00000260793	ENSG00000178026	LRRC75B	GBM,KIRP,LGG,LUAD,TGCT,THCA	KIRP
ENSG00000260793	ENSG00000204815	ODAD4	GBM,KIRP,PAAD,PCPG,THCA	KIRP
ENSG00000260793	ENSG00000222009	BTBD19	GBM,KIRP,LUAD,TGCT,THCA	KIRP
ENSG00000260793	ENSG00000090971	NAT14	KICH,KIRP,PAAD,THCA,THYM	KIRP
ENSG00000260793	ENSG00000180089	TMEM86B	KIRP,PAAD,PCPG,TGCT,THCA,THYM	KIRP
ENSG00000260793	ENSG00000241404	EGFL8	KIRP,LGG,TGCT,THYM,UCS	KIRP

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000148399	DPH7	8	ACC,BLCA,BRCA,CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000213918	DNASE1	6	BLCA,GBM,LGG,LUAD,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000087157	PGS1	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000087157	PGS1	6	CHOL,GBM,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000087157	PGS1	5	CHOL,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000128191	DGCR8	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000128191	DGCR8	8	ACC,BLCA,CHOL,GBM,KIRP,LUAD,LUSC,PAAD
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000124222	STX16	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000124222	STX16	11	BLCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000124222	STX16	6	CHOL,DLBC,KIRP,LGG,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000114735	HEMK1	8	BLCA,BRCA,CHOL,KIRP,LGG,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000114735	HEMK1	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000148341	SH3GLB2	6	BLCA,BRCA,CHOL,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000148343	MIGA2	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000148343	MIGA2	7	BLCA,CHOL,GBM,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000103037	SETD6	6	CHOL,GBM,KIRP,LUAD,LUSC,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000106608	URGCP	5	BRCA,CHOL,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000143624	INTS3	5	BLCA,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000143624	INTS3	7	BLCA,GBM,KIRP,LUAD,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000105698	USF2	5	ACC,CHOL,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000130787	HIP1R	6	BLCA,CHOL,GBM,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000138834	MAPK8IP3	11	ACC,BLCA,BRCA,CHOL,GBM,KIRP,LUAD,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000138834	MAPK8IP3	6	ACC,CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000180376	CCDC66	7	GBM,KIRP,LGG,LUSC,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000180376	CCDC66	5	KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000099326	MZF1	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000099326	MZF1	12	ACC,BLCA,BRCA,CHOL,GBM,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000099326	MZF1	5	ACC,CHOL,LUAD,PAAD,PCPG
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000188315	C3orf62	5	BLCA,CHOL,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000188315	C3orf62	11	BLCA,CHOL,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000100124	ANKRD54	5	CHOL,KIRP,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000158863	FAM160B2	6	CHOL,GBM,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000185158	LRRC37B	6	CHOL,ESCA,GBM,KIRP,LUSC,PAAD
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000185158	LRRC37B	5	CHOL,KIRP,LGG,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000215375	MYL5	8	ACC,BLCA,BRCA,CHOL,KIRP,LGG,LUAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000266173	STRADA	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000266173	STRADA	7	BLCA,CHOL,GBM,KIRP,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000266173	STRADA	6	CHOL,DLBC,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000067365	METTL22	7	ACC,CHOL,LGG,LUAD,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000067365	METTL22	6	CHOL,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000198933	TBKBP1	8	CHOL,GBM,KIRP,LGG,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000174788	PCP2	5	BLCA,BRCA,KIRP,LUAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000072609	CHFR	7	CHOL,GBM,KIRP,LGG,LUAD,PAAD,PCPG
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000068400	GRIPAP1	8	BLCA,CHOL,ESCA,GBM,KIRP,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000161904	LEMD2	6	CHOL,GBM,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000106246	PTCD1	5	BLCA,CHOL,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000163161	ERCC3	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000134884	ARGLU1	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000134884	ARGLU1	10	BLCA,CHOL,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000134884	ARGLU1	6	CHOL,DLBC,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000134884	ARGLU1	5	CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000102125	TAZ	11	BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000132716	DCAF8	8	CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000132716	DCAF8	7	CHOL,DLBC,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000215788	TNFRSF25	7	CHOL,KIRP,LUAD,LUSC,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000154957	ZNF18	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000154957	ZNF18	6	CHOL,GBM,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000125447	GGA3	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000125447	GGA3	7	BLCA,CHOL,GBM,KIRP,LUAD,LUSC,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000137343	ATAT1	5	BLCA,BRCA,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000104936	DMPK	6	BRCA,CHOL,GBM,KIRP,LUSC,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000178971	CTC1	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000178971	CTC1	6	CHOL,GBM,KIRP,LGG,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000185684	EP400P1	6	ACC,BLCA,GBM,LGG,LUAD,PCPG
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000167967	E4F1	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000167967	E4F1	13	ACC,BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000104731	KLHDC4	9	BLCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000275023	MLLT6	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000275023	MLLT6	9	ACC,CHOL,GBM,KIRP,LUAD,LUSC,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000160055	TMEM234	5	BRCA,KIRP,LUAD,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000182872	RBM10	6	CHOL,GBM,LGG,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000141577	CEP131	10	CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000104859	CLASRP	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000104859	CLASRP	14	ACC,BLCA,BRCA,CHOL,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000182841	RRP7BP	7	CHOL,GBM,LGG,LUAD,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000100445	SDR39U1	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000100445	SDR39U1	10	BLCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000172613	RAD9A	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000172613	RAD9A	7	ACC,BLCA,CHOL,GBM,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000154832	CXXC1	9	BLCA,CHOL,GBM,KIRP,LGG,LUSC,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000213339	QTRT1	12	ACC,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000159086	PAXBP1	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000159086	PAXBP1	9	ACC,CHOL,ESCA,GBM,KIRP,LUSC,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000159086	PAXBP1	5	CHOL,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000159086	PAXBP1	6	ACC,CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000160799	CCDC12	5	CHOL,KIRP,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000110455	ACCS	6	BLCA,CHOL,ESCA,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000167280	ENGASE	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000167280	ENGASE	11	BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000167280	ENGASE	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000168887	C2orf68	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000109046	WSB1	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000109046	WSB1	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000109046	WSB1	5	CHOL,KIRP,LGG,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000213366	GSTM2	5	CHOL,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000105443	CYTH2	7	BLCA,BRCA,GBM,KIRP,LUSC,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000168395	ING5	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000168395	ING5	9	CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000168395	ING5	7	CHOL,DLBC,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000168395	ING5	5	CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000144559	TAMM41	6	CHOL,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000140400	MAN2C1	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000140400	MAN2C1	9	BLCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000266967	AARSD1	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000266967	AARSD1	13	BLCA,BRCA,CHOL,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000266967	AARSD1	7	CHOL,DLBC,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000152520	PAN3	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000152520	PAN3	6	CHOL,GBM,KIRP,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000152520	PAN3	5	CHOL,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000152520	PAN3	5	CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000168434	COG7	5	CHOL,GBM,LGG,LUAD,LUSC
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000154370	TRIM11	6	BLCA,BRCA,CHOL,LGG,LUAD,LUSC
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000198625	MDM4	6	CHOL,KIRP,LUSC,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000198625	MDM4	6	CHOL,DLBC,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000198625	MDM4	5	CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000095397	WHRN	5	ACC,BRCA,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000183891	TTC32	8	CHOL,ESCA,GBM,KIRP,LGG,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000183891	TTC32	7	CHOL,DLBC,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000107281	NPDC1	5	ACC,BRCA,CHOL,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000103051	COG4	5	CHOL,GBM,KIRP,LGG,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000166432	ZMAT1	8	CHOL,GBM,KIRP,LGG,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000166432	ZMAT1	6	CHOL,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000126870	DYNC2I1	5	ACC,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000249115	HAUS5	8	CHOL,GBM,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000108773	KAT2A	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000108773	KAT2A	12	BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000108773	KAT2A	5	CHOL,DLBC,KIRP,LGG,PAAD
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000002016	RAD52	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000002016	RAD52	7	CHOL,GBM,KIRP,LGG,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000002016	RAD52	7	CHOL,DLBC,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000137221	TJAP1	5	CHOL,GBM,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000148950	IMMP1L	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000176444	CLK2	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000176444	CLK2	12	BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000176444	CLK2	6	CHOL,DLBC,KIRP,LGG,LUAD,PAAD
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000100416	TRMU	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000100416	TRMU	8	CHOL,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000100201	DDX17	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000100201	DDX17	5	CHOL,KIRP,LGG,LUSC,PAAD
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000100201	DDX17	6	CHOL,DLBC,KIRP,LGG,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000180902	D2HGDH	12	BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000167766	ZNF83	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000167766	ZNF83	6	CHOL,KIRP,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000167766	ZNF83	6	ACC,CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000196405	EVL	7	ACC,BRCA,CHOL,LUAD,PAAD,PCPG,PRAD
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000117360	PRPF3	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000117360	PRPF3	8	CHOL,GBM,KIRP,LGG,LUAD,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000117360	PRPF3	6	CHOL,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000146826	TRAPPC14	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000146826	TRAPPC14	7	BLCA,BRCA,CHOL,GBM,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000007392	LUC7L	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000007392	LUC7L	13	ACC,BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000007392	LUC7L	5	CHOL,KIRP,LGG,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000104885	DOT1L	5	CHOL,GBM,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000127511	SIN3B	5	BLCA,CHOL,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000127511	SIN3B	5	BLCA,CHOL,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000160051	IQCC	5	BRCA,KIRP,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000130244	FAM98C	9	ACC,BRCA,CHOL,ESCA,KIRP,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000100083	GGA1	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000100083	GGA1	9	BLCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PRAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000071894	CPSF1	7	CHOL,GBM,KIRP,LGG,LUSC,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000104957	CCDC130	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000104957	CCDC130	14	ACC,BLCA,BRCA,CHOL,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000104957	CCDC130	5	ACC,CHOL,LUAD,LUSC,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000119688	ABCD4	5	BLCA,CHOL,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000159079	CFAP298	9	BLCA,BRCA,CHOL,ESCA,KIRP,LUSC,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000163482	STK36	7	BLCA,GBM,KIRP,LUAD,LUSC,PCPG,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000163660	CCNL1	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000163660	CCNL1	7	ACC,BLCA,CHOL,KIRP,LGG,LUSC,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000163660	CCNL1	6	CHOL,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000163660	CCNL1	5	ACC,CHOL,LUAD,LUSC,PAAD
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000116497	S100PBP	5	CHOL,DLBC,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000130714	POMT1	6	ACC,CHOL,GBM,LGG,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000128563	PRKRIP1	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000128563	PRKRIP1	8	BLCA,BRCA,CHOL,GBM,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000188827	SLX4	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000188827	SLX4	5	CHOL,GBM,LUAD,LUSC,PAAD
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000004534	RBM6	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000004534	RBM6	12	BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000004534	RBM6	6	CHOL,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000004534	RBM6	5	CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000132424	PNISR	5	BLCA,CHOL,GBM,KIRP,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000132424	PNISR	8	ACC,BLCA,CHOL,GBM,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000132424	PNISR	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000131051	RBM39	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000131051	RBM39	8	BLCA,CHOL,GBM,KIRP,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000131051	RBM39	6	CHOL,DLBC,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000140326	CDAN1	6	CHOL,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000140326	CDAN1	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000101391	CDK5RAP1	8	CHOL,GBM,KIRP,LGG,LUAD,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000104064	GABPB1	5	CHOL,DLBC,KIRP,LGG,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000099821	POLRMT	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000213780	GTF2H4	7	BLCA,CHOL,GBM,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000167978	SRRM2	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000204237	OXLD1	8	BLCA,BRCA,CHOL,KIRP,LGG,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000187266	EPOR	5	BRCA,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000165792	METTL17	8	CHOL,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000165792	METTL17	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000116001	TIA1	8	BLCA,CHOL,KIRP,LGG,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000116001	TIA1	6	CHOL,DLBC,KIRP,LGG,LUAD,PAAD
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000116001	TIA1	5	CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000003756	RBM5	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000003756	RBM5	12	ACC,BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000003756	RBM5	6	CHOL,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000103024	NME3	6	BRCA,CHOL,KIRP,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000198917	SPOUT1	6	CHOL,GBM,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000273559	CWC25	7	CHOL,GBM,KIRP,LUAD,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000213983	AP1G2	5	BLCA,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000213983	AP1G2	12	ACC,BLCA,BRCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000172890	NADSYN1	6	BLCA,CHOL,GBM,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000140104	CLBA1	6	BLCA,BRCA,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000113119	TMCO6	5	BLCA,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000139190	VAMP1	8	BRCA,CHOL,KIRP,LUAD,LUSC,PAAD,PCPG,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000139190	VAMP1	5	CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000132680	KHDC4	7	BLCA,KIRP,LUAD,LUSC,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000100650	SRSF5	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000100650	SRSF5	10	BLCA,CHOL,ESCA,GBM,KIRP,LGG,LUAD,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000100650	SRSF5	6	CHOL,DLBC,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000156858	PRR14	12	ACC,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000129933	MAU2	5	BLCA,CHOL,GBM,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000129933	MAU2	6	BLCA,CHOL,GBM,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000185917	SETD4	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000185917	SETD4	9	BLCA,CHOL,ESCA,KIRP,LGG,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000185917	SETD4	6	CHOL,KIRP,LGG,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000197857	ZNF44	ENSG00000185917	SETD4	5	CHOL,LUAD,LUSC,PAAD,PCPG
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000108799	EZH1	6	CHOL,GBM,KIRP,LUAD,LUSC,PAAD
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000108799	EZH1	5	CHOL,DLBC,KIRP,LGG,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000177025	C19orf18	5	BLCA,BRCA,GBM,PCPG,PRAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000108963	DPH1	6	CHOL,GBM,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000108963	DPH1	6	CHOL,DLBC,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000185024	BRF1	6	CHOL,KIRP,LUAD,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000177479	ARIH2	5	CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000177479	ARIH2	5	CHOL,GBM,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000177479	ARIH2	5	CHOL,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000102878	HSF4	11	ACC,BRCA,CHOL,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000154144	TBRG1	5	BLCA,CHOL,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000154144	TBRG1	5	BLCA,CHOL,KIRP,LUAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000120662	MTRF1	5	BLCA,CHOL,KIRP,PAAD,THCA
ENSG00000260793	ENSG00000144161	ZC3H8	ENSG00000120662	MTRF1	6	CHOL,DLBC,KIRP,LUAD,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000127415	IDUA	11	BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PRAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000197774	EME2	6	BLCA,CHOL,GBM,KIRP,LUAD,PAAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000197774	EME2	13	ACC,BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,PCPG,PRAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000130023	ERMARD	6	BLCA,CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000139546	TARBP2	5	CHOL,KIRP,LGG,PAAD,THCA
ENSG00000260793	ENSG00000105127	AKAP8	ENSG00000099622	CIRBP	5	BLCA,CHOL,GBM,KIRP,LUAD
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000099622	CIRBP	10	BLCA,BRCA,CHOL,GBM,KIRP,LGG,LUAD,LUSC,PAAD,THCA
ENSG00000260793	ENSG00000130254	SAFB2	ENSG00000108312	UBTF	6	BRCA,CHOL,GBM,KIRP,LUSC,PAAD

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID	RBP ID	RBP Gene Name	Exon Skipping ID	Skipped Exon	EX Gene Name	EX Affected TransID	ORF_anno	Cancer Type
ENSG00000260793	ENSG00000004534	RBM6	exon_skip_382458	ENSG00000060971:chr3:38131595-38131638	ACAA1	ENST00000333167	Frame-shift	PRAD,UCS,THYM,PCPG,PAAD,THCA

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000260793	ENST00000588279	CNIH1	ENSG00000100528	ENST00000556113	-0.1305	80	-	CHOL
ENSG00000260793	ENST00000588279	SEC23A	ENSG00000100934	ENST00000557280	-0.1953	1	-	CHOL,UCEC
ENSG00000260793	ENST00000588279	SEC23A	ENSG00000100934	ENST00000553970	-0.1953	1	-	CHOL,UCEC
ENSG00000260793	ENST00000563394	CNIH1	ENSG00000100528	ENST00000556113	-0.1235	1169	-	CHOL
ENSG00000260793	ENST00000563394	SEC23A	ENSG00000100934	ENST00000557280	-0.1379	1524	-	CHOL,UCEC
ENSG00000260793	ENST00000563394	SEC23A	ENSG00000100934	ENST00000553970	-0.1379	1524	-	CHOL,UCEC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000260793.2	ENST00000588279.1	93	292	11
ENSG00000260793.2	ENST00000563394.1	137	48	461

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential