 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | MTRF1,NEIL1,CCNT2,RBM5,CCNL1,NKTR,WSB1,CCDC125,TC2N,TTLL3,ARHGEF38,N4BP2L2,RSRP1,OGT,RBM25,KHDC4,LRP5L,TIA1,GOLGA8B,CENATAC,PRPF39,RNPC3,ANKRD10,MSANTD2,RBM33,ANKMY1,CCDC14 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_287011 | ENSG00000260711.2 | chr14 | 91757754 | - | sense_intronic | RP11-747H7.3 | ENST00000565058.2 | sense_intronic | RP11-747H7.3-001 | | LncEditing_287017 | ENSG00000260711.2 | chr14 | 91757792 | - | sense_intronic | RP11-747H7.3 | ENST00000565058.2 | sense_intronic | RP11-747H7.3-001 | | LncEditing_287018 | ENSG00000260711.2 | chr14 | 91757794 | - | sense_intronic | RP11-747H7.3 | ENST00000565058.2 | sense_intronic | RP11-747H7.3-001 | | LncEditing_287022 | ENSG00000260711.2 | chr14 | 91757824 | - | sense_intronic | RP11-747H7.3 | ENST00000565058.2 | sense_intronic | RP11-747H7.3-001 | | LncEditing_287023 | ENSG00000260711.2 | chr14 | 91757829 | - | sense_intronic | RP11-747H7.3 | ENST00000565058.2 | sense_intronic | RP11-747H7.3-001 | | LncEditing_287029 | ENSG00000260711.2 | chr14 | 91757864 | - | sense_intronic | RP11-747H7.3 | ENST00000565058.2 | sense_intronic | RP11-747H7.3-001 | | LncEditing_287030 | ENSG00000260711.2 | chr14 | 91757870 | - | sense_intronic | RP11-747H7.3 | ENST00000565058.2 | sense_intronic | RP11-747H7.3-001 | | LncEditing_287065 | ENSG00000260711.2 | chr14 | 91758016 | - | sense_intronic | RP11-747H7.3 | ENST00000565058.2 | sense_intronic | RP11-747H7.3-001 | | LncEditing_287066 | ENSG00000260711.2 | chr14 | 91758020 | - | sense_intronic | RP11-747H7.3 | ENST00000565058.2 | sense_intronic | RP11-747H7.3-001 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000260711 | LncEditing_287011 | LUAD | chr14_91757754_- | 3.067218e+00 | 1.540254e+00 | 1.006277e+00 | 9.572065e+00 | 1.047909e-21 | 3.719219e-21 | UP | | ENSG00000260711 | LncEditing_287017 | LUAD | chr14_91757792_- | 3.005391e+00 | 1.498394e+00 | 9.958819e-01 | 9.595275e+00 | 8.369368e-22 | 3.019947e-21 | UP | | ENSG00000260711 | LncEditing_287018 | LUAD | chr14_91757794_- | 2.867148e+00 | 1.417099e+00 | 9.835980e-01 | 1.077944e+01 | 4.305168e-27 | 2.663054e-26 | UP | | ENSG00000260711 | LncEditing_287030 | LUAD | chr14_91757870_- | 3.000790e+00 | 1.271886e+00 | 8.075111e-01 | 1.173475e+01 | 8.457794e-32 | 9.390320e-31 | UP | | ENSG00000260711 | LncEditing_287065 | LUAD | chr14_91758016_- | 3.376346e+00 | 1.420046e+00 | 8.003042e-01 | 9.156223e+00 | 5.374545e-20 | 1.593957e-19 | UP | | ENSG00000260711 | LncEditing_287011 | STAD | chr14_91757754_- | 1.648427e+00 | 9.805917e-01 | 1.334462e+00 | 6.505752e+00 | 7.730574e-11 | 1.296274e-10 | UP | | ENSG00000260711 | LncEditing_287017 | STAD | chr14_91757792_- | 1.718118e+00 | 8.788495e-01 | 1.033975e+00 | 8.667250e+00 | 4.426832e-18 | 1.542390e-17 | UP | | ENSG00000260711 | LncEditing_287018 | STAD | chr14_91757794_- | 1.637601e+00 | 8.527135e-01 | 1.062191e+00 | 9.187578e+00 | 4.017865e-20 | 1.820754e-19 | UP | | ENSG00000260711 | LncEditing_287022 | STAD | chr14_91757824_- | 1.604723e+00 | 1.022460e+00 | 1.537800e+00 | 5.745976e+00 | 9.139222e-09 | 1.310047e-08 | UP | | ENSG00000260711 | LncEditing_287023 | STAD | chr14_91757829_- | 1.684660e+00 | 1.010075e+00 | 1.355022e+00 | 5.357287e+00 | 8.448066e-08 | 1.130620e-07 | UP | | ENSG00000260711 | LncEditing_287030 | STAD | chr14_91757870_- | 1.665419e+00 | 7.906323e-01 | 9.304000e-01 | 1.069922e+01 | 1.026399e-26 | 1.185326e-25 | UP | | ENSG00000260711 | LncEditing_287065 | STAD | chr14_91758016_- | 1.504059e+00 | 9.731298e-01 | 1.591960e+00 | 6.539511e+00 | 6.172017e-11 | 1.042256e-10 | UP | | ENSG00000260711 | LncEditing_287066 | STAD | chr14_91758020_- | 1.448375e+00 | 1.027498e+00 | 2.018980e+00 | 4.703693e+00 | 2.554976e-06 | 3.151357e-06 | UP | | ENSG00000260711 | LncEditing_287011 | PRAD | chr14_91757754_- | 1.495103e+00 | 1.167216e+00 | 2.799759e+00 | 4.511038e+00 | 6.451116e-06 | 8.684760e-06 | UP | | ENSG00000260711 | LncEditing_287017 | PRAD | chr14_91757792_- | 1.508293e+00 | 1.102145e+00 | 2.209444e+00 | 7.309526e+00 | 2.680863e-13 | 6.287261e-13 | UP | | ENSG00000260711 | LncEditing_287018 | PRAD | chr14_91757794_- | 1.463110e+00 | 1.051064e+00 | 2.095612e+00 | 8.740773e+00 | 2.315199e-18 | 7.909147e-18 | UP | | ENSG00000260711 | LncEditing_287030 | PRAD | chr14_91757870_- | 1.447820e+00 | 1.067843e+00 | 2.276958e+00 | 7.787509e+00 | 6.834299e-15 | 1.803156e-14 | UP | | ENSG00000260711 | LncEditing_287065 | PRAD | chr14_91758016_- | 1.474992e+00 | 1.152349e+00 | 2.807968e+00 | 5.791117e+00 | 6.991969e-09 | 1.164015e-08 | UP | | ENSG00000260711 | LncEditing_287011 | BRCA | chr14_91757754_- | 2.599325e+00 | 1.350393e+00 | 1.058472e+00 | 1.508177e+01 | 2.134686e-51 | 9.579735e-51 | UP | | ENSG00000260711 | LncEditing_287017 | BRCA | chr14_91757792_- | 2.215696e+00 | 1.356091e+00 | 1.411820e+00 | 1.469666e+01 | 6.771879e-49 | 2.750367e-48 | UP | | ENSG00000260711 | LncEditing_287018 | BRCA | chr14_91757794_- | 2.221406e+00 | 1.221585e+00 | 1.159126e+00 | 1.745311e+01 | 3.259816e-68 | 3.159848e-67 | UP | | ENSG00000260711 | LncEditing_287022 | BRCA | chr14_91757824_- | 2.878793e+00 | 1.521732e+00 | 1.087252e+00 | 1.115299e+01 | 6.924099e-29 | 1.245995e-28 | UP | | ENSG00000260711 | LncEditing_287029 | BRCA | chr14_91757864_- | 2.387928e+00 | 1.529260e+00 | 1.555389e+00 | 1.075786e+01 | 5.442047e-27 | 9.095099e-27 | UP | | ENSG00000260711 | LncEditing_287030 | BRCA | chr14_91757870_- | 2.271445e+00 | 1.114441e+00 | 9.734349e-01 | 1.973262e+01 | 1.131403e-86 | 2.996472e-85 | UP | | ENSG00000260711 | LncEditing_287065 | BRCA | chr14_91758016_- | 2.277991e+00 | 1.352277e+00 | 1.329131e+00 | 1.480841e+01 | 1.292586e-49 | 5.369771e-49 | UP | | ENSG00000260711 | LncEditing_287066 | BRCA | chr14_91758020_- | 2.452422e+00 | 1.533857e+00 | 1.477011e+00 | 8.836054e+00 | 9.915907e-19 | 1.360163e-18 | UP | | ENSG00000260711 | LncEditing_287018 | PAAD | chr14_91757794_- | 1.585344e+00 | 9.519989e-01 | 1.359131e+00 | 4.554538e+00 | 5.250088e-06 | 9.383135e-06 | UP | | ENSG00000260711 | LncEditing_287030 | PAAD | chr14_91757870_- | 1.595656e+00 | 9.543494e-01 | 1.348508e+00 | 4.336851e+00 | 1.445383e-05 | 2.440445e-05 | UP | | ENSG00000260711 | LncEditing_287065 | ESCA | chr14_91758016_- | 1.745716e+00 | 8.542460e-01 | 9.698426e-01 | 5.269483e+00 | 1.368082e-07 | 2.489150e-07 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000260711 | LncEditing_287011 | -3.487086e-01 | 5.883843e-03 | 7.867411e-03 | | ENSG00000260711 | LncEditing_287023 | -4.602054e-01 | 1.671181e-03 | 2.933004e-03 | | ENSG00000260711 | LncEditing_287030 | -3.321693e-01 | 1.278557e-04 | 4.701359e-04 | | ENSG00000260711 | LncEditing_287066 | -3.924100e-01 | 3.044589e-03 | 4.688405e-03 | | ENSG00000260711 | LncEditing_287011 | -3.775194e-01 | 3.628259e-02 | 4.073392e-02 | | ENSG00000260711 | LncEditing_287017 | -4.998635e-01 | 7.501852e-04 | 5.307419e-03 | | ENSG00000260711 | LncEditing_287018 | -4.599208e-01 | 2.810164e-04 | 3.785916e-03 | | ENSG00000260711 | LncEditing_287030 | -3.604633e-01 | 1.386073e-02 | 2.408929e-02 | | ENSG00000260711 | LncEditing_287065 | -4.875835e-01 | 2.558693e-03 | 9.442525e-03 | | ENSG00000260711 | LncEditing_287018 | -6.861153e-01 | 5.563857e-05 | 8.623979e-04 | | ENSG00000260711 | LncEditing_287011 | -4.200886e-01 | 6.758414e-04 | 1.050493e-03 | | ENSG00000260711 | LncEditing_287065 | -4.779884e-01 | 3.252182e-06 | 1.440087e-05 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000260711 | ENSG00000175455 | CCDC14 | BRCA,LUAD,PAAD,PRAD,STAD | STAD | | | ENSG00000260711 | ENSG00000236699 | ARHGEF38 | BRCA,ESCA,LUAD,PAAD,PRAD,STAD | STAD | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000260711.2 | ENST00000565058.2 | 180 | 1162 | 1704 |
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