 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | NDUFB10,BLOC1S1,DUT,ARL16,UXT,TCEA2,MRPL55,EMG1,KRT10,C12orf57,MRPS26,CENPX,SNRNP25,PET100,CHCHD5,ATP5MG,PPOX,NDUFAB1,RRNAD1,KAT8,ZSWIM7,NDUFB11,HINT2,HSD17B8,TIMM17B,NDUFA11,NPRL2,MIX23,TRAPPC2L,ZNHIT1,HIRIP3,PHKG2,PMF1,NUBP2,LCMT1,COA3,FIS1,NAA80,NAA38,TMEM223,TMEM208,JTB,TMEM251,CWC15,ILKAP,CISD3,COX17,ATP5MJ,UROD,NELFE,METTL23,ANKRD39,STX8,ACYP1,ELP5,HEXIM2,SMDT1,PQBP1,TMEM186,MIIP,COX4I1,PARL,TIGD1,PSMB3,LYRM1,COMMD1,MTLN,TTC32,COMMD6,MRPL57,CD2BP2,CIAO2B,MCRIP2,IFI27L1,TMA7,PFDN5,PAM16,MRPL27,YBEY,NEDD8,NDUFB1,DUSP28,POP5,BOLA1,CZIB,NDUFA1,ABHD14A,SMIM4,YPEL3,COA5,METTL26,NSMCE1,SCAND1,COX14,ATP5MC2,ANAPC11,ATP5PF,CCDC12,MCRIP1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ANKRD39,IFI27L1,PQBP1,LAMTOR4,COX17,MIIP,FAM195B,HINT2,PMF1,PSMB3,THAP7,GPANK1,C14orf2,NDUFAB1,NSMCE1,NDUFB11,NENF,ARIH2OS,ZSWIM7,FIS1,C16orf91,OXLD1,NDUFB1,SAT2,TIMM17B | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | IQGAP1,FNDC3B,TOP1,TMEM131,EIF4G1,CLTC,TRIP12 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000260625.2 | ENST00000569782.2 | 113 | 110 | 451 |
|
