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lncRNA: ENSG00000260461

Summary for RP11-541N10.3

Gene summary

Gene information	Ensembl ID	ENSG00000260461
	Gene symbol	RP11-541N10.3
	Gene name
	HGNC
	Entrez ID
	Gene type	sense_overlapping
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-541N10.3

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000260461	1.900961e+02	1.854694e+00	2.886096e-01	6.426306e+00	1.310000e-10	1.680000e-09	UP	CHOL
ENSG00000260461	2.076456e+02	-1.329295e+00	2.512435e-01	-5.290861e+00	1.220000e-07	4.730000e-06	DOWN	ESCA
ENSG00000260461	1.600555e+02	-2.419753e+00	1.161054e-01	-2.084100e+01	1.840000e-96	1.850000e-94	DOWN	LUSC
ENSG00000260461	2.509059e+02	-1.333732e+00	1.165079e-01	-1.144757e+01	2.420000e-30	4.850000e-29	DOWN	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000260461	5.415878e-01	1.220394e-04	CHOL	3.475696e-04
ENSG00000260461	-3.409908e-01	1.075418e-03	KICH	1.464168e-03
ENSG00000260461	-4.430853e-01	1.260671e-30	KIRC	5.107901e-29
ENSG00000260461	-3.280187e-01	9.425400e-09	KIRP	8.111154e-08
ENSG00000260461	-3.754444e-01	9.400171e-20	LUSC	1.774427e-17

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lncRNA-Protein interaction for RP11-541N10.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000096070	BRPF3	104.53	92.3204	Q9ULD4	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000080503	SMARCA2	87.84	96.2759	P51531	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000123636	BAZ2B	85.91	96.5354	Q9UIF8	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000127616	SMARCA4	83.51	92.6879	P51532	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000009954	BAZ1B	79.5	96.5555	Q9UIG0	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000054267	ARID4B	76.6	96.0024	Q4LE39	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000032219	ARID4A	73.75	90.804	P29374	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000275023	MLLT6	71.31	95.7672	P55198	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000048649	RSF1	71.27	96.6627	Q96T23	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000181555	SETD2	70.94	97.2118	Q9BYW2	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000108557	RAI1	69.01	92.5835	Q7Z5J4	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000005483	KMT2E	68.76	97.0383	Q8IZD2	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000227345	PARG	66.39	94.3064	Q86W56	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000171681	ATF7IP	66.06	95.2963	Q6VMQ6	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000164190	NIPBL	65.73	97.7395	Q6KC79	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000170322	NFRKB	64.65	93.9559	Q6P4R8	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000104517	UBR5	63.6	95.625	O95071	RBP,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000165671	NSD1	63.57	95.9373	Q96L73	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000100393	EP300	63.34	96.266	Q09472	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000005339	CREBBP	62.57	95.9336	Q92793	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000118900	UBN1	62.06	93.8797	Q9NPG3	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000114933	INO80D	60.85	94.2495	Q53TQ3	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000086758	HUWE1	57.72	97.071	Q7Z6Z7	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000108799	EZH1	53.2	93.2665	Q92800	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000084676	NCOA1	53.09	94.1638	Q15788	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000171988	JMJD1C	52.94	96.8062	Q15652	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000168769	TET2	52.27	93.8208	Q6N021	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000120733	KDM3B	51.13	94.7101	Q7LBC6	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000137337	MDC1	51.07	96.8215	Q14676	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000115548	KDM3A	50.85	94.4015	Q9Y4C1	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000204406	MBD5	50.84	91.6852	Q9P267	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000078403	MLLT10	50.39	96.2834	P55197	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000084093	REST	49.64	92.7031	Q13127	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000106829	TLE4	48.23	93.5782	Q04727	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000186532	SMYD4	45.01	91.8403	Q8IYR2	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000120071	KANSL1	36.5	92.8131	Q7Z3B3	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000171456	ASXL1	33.0	96.1293	Q8IXJ9	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000150907	FOXO1	27.99	92.0808	Q12778	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000172977	KAT5	23.57	92.5436	Q92993	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000019485	PRDM11	10.08	90.6379	Q9NQV5	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000115966	ATF2	8.98	90.0249	P15336	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000173473	SMARCC1	99.24	93.6072	Q92922	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000067369	TP53BP1	89.09	93.3708	Q12888	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000128908	INO80	85.4	95.212	Q9ULG1	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000118058	KMT2A	77.7	92.7661	Q03164	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000108094	CUL2	73.36	90.7361	Q13617	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000165632	TAF3	72.21	94.5048	Q5VWG9	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000168137	SETD5	70.94	94.8071	Q9C0A6	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000175054	ATR	67.71	92.6788	Q13535	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000116731	PRDM2	64.67	96.0675	Q13029	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000196199	MPHOSPH8	62.62	91.6043	Q99549	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000140320	BAHD1	62.09	93.5179	Q8TBE0	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000085224	ATRX	61.04	95.9113	P46100	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000110851	PRDM4	60.52	91.8176	Q9UKN5	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000185658	BRWD1	59.05	96.5259	Q9NSI6	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000263001	GTF2I	58.83	93.1182	P78347	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000147130	ZMYM3	55.36	95.7053	Q14202	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000141027	NCOR1	54.1	97.1065	O75376	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000139613	SMARCC2	46.84	97.1369	Q8TAQ2	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000198646	NCOA6	46.43	96.6255	Q14686	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000095787	WAC	43.5	90.992	Q9BTA9	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000156650	KAT6B	39.37	96.2177	Q8WYB5	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000121741	ZMYM2	36.8	92.8491	Q9UBW7	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000169057	MECP2	31.32	91.7533	P51608	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000117625	RCOR3	27.9	92.1398	Q9P2K3	Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000141644	MBD1	15.61	93.4645	Q9UIS9	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000140632	GLYR1	11.86	94.4157	Q49A26	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000123636	BAZ2B	85.91	95.2225	Q9UIF8	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000174282	ZBTB4	80.42	92.1234	Q9P1Z0	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000118058	KMT2A	77.7	92.285	Q03164	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000144747	TMF1	77.17	94.8592	P82094	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000102908	NFAT5	76.26	93.4173	O94916	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000116731	PRDM2	64.67	93.8575	Q13029	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000085276	MECOM	64.11	93.3871	Q03112	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000110851	PRDM4	60.52	91.383	Q9UKN5	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000125812	GZF1	59.11	94.7634	Q9H116	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000263001	GTF2I	58.83	93.1567	P78347	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000166888	STAT6	58.77	91.4605	P42226	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000181827	RFX7	57.86	94.514	Q2KHR2	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000084676	NCOA1	53.09	93.5341	Q15788	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000236287	ZBED5	53.08	93.1065	Q49AG3	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000168769	TET2	52.27	93.7694	Q6N021	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000167232	ZNF91	50.26	94.3637	Q05481	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000084093	REST	49.64	92.3852	Q13127	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000126804	ZBTB1	49.02	93.1466	Q9Y2K1	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000124459	ZNF45	48.4	93.2549	Q02386	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000198538	ZNF28	46.08	92.5008	P17035	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000198521	ZNF43	45.44	92.0013	P17038	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000106571	GLI3	44.89	90.2969	P10071	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000146587	RBAK	44.22	91.4566	Q9NYW8	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000126464	PRR12	42.51	95.9297	Q9ULL5	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000086102	NFX1	40.49	91.1815	Q12986	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000198040	ZNF84	37.97	93.5532	P51523	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000168795	ZBTB5	36.04	93.9455	O15062	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000198815	FOXJ3	34.58	90.3463	Q9UPW0	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000186272	ZNF17	33.21	93.6296	P17021	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000025156	HSF2	32.5	93.5516	Q03933	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000164631	ZNF12	31.85	91.3357	P17014	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000169057	MECP2	31.32	90.8804	P51608	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000197857	ZNF44	30.61	91.1448	P15621	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000150907	FOXO1	27.99	90.6726	Q12778	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000184939	ZFP90	27.06	91.1675	Q8TF47	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000142065	ZFP14	26.95	90.5567	Q9HCL3	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000105708	ZNF14	26.21	92.4315	P17017	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000180787	ZFP3	25.38	93.1048	Q96NJ6	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000062194	GPBP1	25.36	91.0975	Q86WP2	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000168661	ZNF30	23.88	93.3534	P17039	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000120784	ZFP30	21.06	90.8395	Q9Y2G7	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000168310	IRF2	19.2	90.6463	P14316	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000141644	MBD1	15.61	91.1351	Q9UIS9	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000065970	FOXJ2	11.95	90.742	Q9P0K8	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000140632	GLYR1	11.86	94.1601	Q49A26	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000196152	ZNF79	11.31	91.38	Q15937	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000278129	ZNF8	9.88	91.9403	P17098	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000187792	ZNF70	9.42	92.7143	Q9UC06	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000115966	ATF2	8.98	90.0248	P15336	TF,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000196378	ZNF34	8.87	92.2359	Q8IZ26	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000095574	IKZF5	7.68	92.2191	Q9H5V7	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000175395	ZNF25	7.23	92.6026	P17030	TF	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000275111	ZNF2	6.59	90.3578	Q9BSG1	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000056097	ZFR	86.62	94.2259	Q96KR1	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000159082	SYNJ1	64.96	94.9047	O43426	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000104517	UBR5	63.6	95.3711	O95071	RBP,Epi	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000213079	SCAF8	61.58	90.7193	Q9UPN6	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000079785	DDX1	60.88	93.2772	Q92499	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000137776	SLTM	58.93	95.3355	Q9NWH9	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000198000	NOL8	56.33	96.0686	Q76FK4	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000139746	RBM26	53.26	91.188	Q5T8P6	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000085872	CHERP	52.65	93.79	Q8IWX8	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000067596	DHX8	50.2	94.3262	Q14562	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000129317	PUS7L	49.78	92.8206	Q9H0K6	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000135870	RC3H1	39.84	93.2519	Q5TC82	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000113742	CPEB4	37.84	90.8086	Q17RY0	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000133226	SRRM1	33.54	97.2002	Q8IYB3	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000100650	SRSF5	27.71	90.3954	Q13243	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000167978	SRRM2	18.73	97.3607	Q9UQ35	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000137449	CPEB2	14.31	93.8205	Q7Z5Q1	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000100461	RBM23	10.97	95.7956	Q86U06	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000145414	NAF1	9.92	93.866	Q96HR8	RBP	NA
ENSG00000260461	ENST00000568017	RP11-541N10.3	ENSG00000155858	LSM11	9.76	92.3983	P83369	RBP	NA

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lncRNA-DNA interaction for RP11-541N10.3

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-541N10.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PSMB5,TRAIP,PRDX4,SIGMAR1,PSMD2,METTL1,DDT,RNF181,TOMM40,LAMTOR2,UXT,MRPL51,FTL,CCDC167,AURKAIP1,BLOC1S1,ZNHIT1,THOC6,PET100,ANAPC11,MAD2L2,ATP6V0B,TALDO1,KPNA2,COX6A1,CTU2,PPIH,CHMP2A,NDUFS5,PTTG1,TUBA1C,BCL2L12,CLPP,SLC25A10,SRA1,LONP1,SERF2,TMEM160,DUS1L,MRPL27,COX4I1,CENPW,CDKN3,DCXR,MIIP,EIF2B3,RPL35,YIF1A,GPX4,ANTKMT,FAM174C,SNRPD2,NDUFA11,SLIRP,RPL36,COX6B1,PFDN5,TMEM208,C12orf45,SIVA1,MRPL55,ROMO1,JPT1,COPE,TIMM10,ACOT7,SKA1,TK1,SPAG5,GMPPA,ORC1,CDC25C,PKMYT1,PFN1,ECE2,NDUFB9,SELENOH,PPP4C,C19orf48,CYC1,PSENEN,BOLA3,SDF2L1,NDUFA12,TKT,DONSON,LAGE3,GALK1,MRPL28,MRPL37,SPC24,HSPB1,ELOB,EIF6,PDCD5,UQCRQ,MRPL47,BIRC5,ADRM1,MTHFD1L,RPN1,SMCO4,HSPE1,DTYMK,TROAP,TXNDC17,AP2S1,C2,NDUFB11,NDUFS6,AURKB,P4HB,CENPH,SAC3D1,CIAO2B,OAZ1,PRR7,NCLN,NANS,EMC9,SRM,RCC1,CCNB2,POLR2I,FBXL6,TUBB4B,GCDH,MRPL52,NDUFS8,NOC4L,CCDC85B,UBE2S,PSMB7,CENPN,NTMT1,COX5A,COX7A2,UBA52,YIF1B,TAF10,LSM7,CDC45,MRPS15,TBC1D7,TEDC2,ATP5MF,PSMB6,BUD31,NUDT1,SLC52A2,PSMB3,CALR,METTL26,GPI,COMMD4,NDUFA3,PLK1,MRPL36,SEM1,PYCR1,CDC20

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000260461	ENST00000568017	exon_skip_89597	chr12:6672349-6672532	-28.15	-0.1686	ZNF384	ENST00000361959,ENST00000396801	In-frame
ENSG00000260461	ENST00000568017	exon_skip_140155	chr16:291189-291297	-19.09	-0.1948	AXIN1	ENST00000262320	In-frame
ENSG00000260461	ENST00000568017	exon_skip_140283	chr16:635611-635774	-23.57	-0.1571	METTL26	ENST00000301686	Frame-shift
ENSG00000260461	ENST00000568017	exon_skip_140339	chr16:635611-635774	-23.57	-0.1571	METTL26	ENST00000301686	Frame-shift
ENSG00000260461	ENST00000568017	exon_skip_305660	chr19:35269802-35270003	-27.87	-0.1557	USF2	ENST00000222305	In-frame
ENSG00000260461	ENST00000568017	exon_skip_426982	chr4:163515312-163515461	-22.04	-0.1821	TMA16	ENST00000358572	Frame-shift
ENSG00000260461	ENST00000568017	exon_skip_490705	chr8:86484871-86484961	-8.46	-0.1044	RMDN1	ENST00000406452	In-frame
ENSG00000260461	ENST00000568017	exon_skip_110809	chr14:105449358-105449409	-16.42	-0.5864	MTA1	ENST00000331320	In-frame
ENSG00000260461	ENST00000568017	exon_skip_150854	chr17:32366664-32366757	-12.50	-0.1838	ZNF207	ENST00000321233	In-frame
ENSG00000260461	ENST00000568017	exon_skip_423688	chr4:53414614-53414722	-18.98	-0.2182	FIP1L1	ENST00000337488	In-frame
ENSG00000260461	ENST00000568017	exon_skip_462554	chr6:136267028-136267175	-14.56	-0.1095	BCLAF1	ENST00000531224	In-frame
ENSG00000260461	ENST00000568017	exon_skip_478176	chr7:100435630-100435767	-20.80	-0.1809	PPP1R35	ENST00000292330	Frame-shift

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000260461	ENST00000568017	exon_skip_41841	chr10:68756272-68756483	-21.81	-0.1205	CCAR1	ENST00000265872	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103879119-103879214	207.00	-62.24	95	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103878622-103878731	195.00	-60.07	104	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103878365-103878472	187.00	-67.20	110	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103877877-103877976	184.00	-61.71	99	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103877973-103878069	177.00	-76.92	97	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103877605-103877703	174.00	-61.53	102	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103878883-103878975	171.00	-64.24	95	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103878489-103878592	164.00	-58.85	98	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103879364-103879463	160.00	-64.33	93	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103879623-103879724	159.00	-64.16	89	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103877400-103877506	154.00	-76.82	100	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103878222-103878320	153.00	-51.36	64	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103879243-103879339	151.00	-69.74	90	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103877698-103877797	149.00	-50.06	100	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103879471-103879586	149.00	-59.25	111	NA
ENSG00000260461	hsa-mir-15b	ENST00000568017	chr10:103878150-103878244	140.00	-64.48	94	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103878043-103878132	226.00	-95.59	89	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103878180-103878271	204.00	-78.85	88	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103877652-103877740	170.00	-72.02	69	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103877375-103877457	163.00	-75.51	59	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103879143-103879229	163.00	-75.95	86	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103877826-103877899	161.00	-68.07	68	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103877470-103877549	157.00	-88.14	66	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103877582-103877655	153.00	-78.01	75	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103878929-103879022	152.00	-77.35	92	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103877896-103877989	147.00	-81.53	83	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103879331-103879417	141.00	-83.28	83	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103878559-103878632	140.00	-79.71	78	NA
ENSG00000260461	hsa-mir-185	ENST00000568017	chr10:103878815-103878903	140.00	-84.12	89	NA

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Variants for RP11-541N10.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000260461	ENST00000568017	NUDT1	ENSG00000106268	ENST00000356714	-0.1471	94	ESCA,LUSC	-
ENSG00000260461	ENST00000568017	NUDT1	ENSG00000106268	ENST00000397046	-0.1471	94	ESCA,LUSC	-
ENSG00000260461	ENST00000568017	NUDT1	ENSG00000106268	ENST00000397048	-0.1471	94	ESCA,LUSC	-
ENSG00000260461	ENST00000568017	NUDT1	ENSG00000106268	ENST00000343985	-0.1471	94	ESCA,LUSC	-
ENSG00000260461	ENST00000568017	NUDT1	ENSG00000106268	ENST00000339737	-0.1471	94	ESCA,LUSC	-
ENSG00000260461	ENST00000568017	NUDT1	ENSG00000106268	ENST00000397049	-0.1471	94	ESCA,LUSC	-
ENSG00000260461	ENST00000568017	ORC1	ENSG00000085840	ENST00000371568	-0.1295	1	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	ORC1	ENSG00000085840	ENST00000371566	-0.1295	1	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	CDC45	ENSG00000093009	ENST00000428937	-0.1289	545	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	CDKN3	ENSG00000100526	ENST00000543789	-0.2814	630	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	CDKN3	ENSG00000100526	ENST00000620759	-0.1356	1490	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	UBE2S	ENSG00000108106	ENST00000589978	-0.3174	654	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	CDC20	ENSG00000117399	ENST00000310955	-0.1371	1411	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	CDC20	ENSG00000117399	ENST00000372462	-0.1371	1411	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	CENPH	ENSG00000153044	ENST00000513575	-0.1060	582	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	PKMYT1	ENSG00000127564	ENST00000262300	-0.1338	69	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	PKMYT1	ENSG00000127564	ENST00000574385	-0.1443	97	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	PKMYT1	ENSG00000127564	ENST00000574730	-0.1379	127	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	PKMYT1	ENSG00000127564	ENST00000573944	-0.1517	129	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	PKMYT1	ENSG00000127564	ENST00000382240	-0.1003	446	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	TROAP	ENSG00000135451	ENST00000549275	-0.7400	595	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	TROAP	ENSG00000135451	ENST00000551245	-0.1786	1684	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	TROAP	ENSG00000135451	ENST00000380327	-0.1217	488	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	TROAP	ENSG00000135451	ENST00000548311	-0.1348	1	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	TROAP	ENSG00000135451	ENST00000257909	-0.1773	124	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	TROAP	ENSG00000135451	ENST00000547923	-0.2196	124	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	ECE2	ENSG00000145194	ENST00000357474	-0.1836	160	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	ECE2	ENSG00000145194	ENST00000430587	-0.1014	516	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	SPC24	ENSG00000161888	ENST00000585486	-0.1210	1604	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	PTTG1	ENSG00000164611	ENST00000352433	-0.1777	1843	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	PTTG1	ENSG00000164611	ENST00000520452	-3.7650	1226	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	PTTG1	ENSG00000164611	ENST00000393964	-0.1684	1331	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	SMCO4	ENSG00000166002	ENST00000527149	-0.3294	571	-	CHOL
ENSG00000260461	ENST00000568017	AURKB	ENSG00000178999	ENST00000316199	-0.1256	122	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	AURKB	ENSG00000178999	ENST00000534871	-0.1027	1913	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	AURKB	ENSG00000178999	ENST00000585124	-0.1497	1913	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	AURKB	ENSG00000178999	ENST00000584972	-0.8800	698	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	CENPW	ENSG00000203760	ENST00000368326	-0.1386	1	ESCA,LUSC,LUAD	-
ENSG00000260461	ENST00000568017	MRPL47	ENSG00000136522	ENST00000392659	-0.1721	1000	ESCA,LUSC	-
ENSG00000260461	ENST00000568017	SIGMAR1	ENSG00000147955	ENST00000477726	-0.1532	536	LUSC	CHOL
ENSG00000260461	ENST00000568017	FTL	ENSG00000087086	ENST00000331825	-0.1511	530	-	CHOL
ENSG00000260461	ENST00000568017	DDT	ENSG00000099977	ENST00000398344	-0.1033	575	-	CHOL
ENSG00000260461	ENST00000568017	DDT	ENSG00000099977	ENST00000350608	-0.1033	575	-	CHOL
ENSG00000260461	ENST00000568017	DDT	ENSG00000099977	ENST00000428792	-0.1329	580	-	CHOL
ENSG00000260461	ENST00000568017	DDT	ENSG00000099977	ENST00000404092	-0.1329	588	-	CHOL
ENSG00000260461	ENST00000568017	DDT	ENSG00000099977	ENST00000403754	-0.5600	1718	-	CHOL
ENSG00000260461	ENST00000568017	DDT	ENSG00000099977	ENST00000430101	-0.1158	513	-	CHOL
ENSG00000260461	ENST00000568017	GCDH	ENSG00000105607	ENST00000590445	-0.1193	552	-	CHOL
ENSG00000260461	ENST00000568017	GCDH	ENSG00000105607	ENST00000590472	-0.1210	791	-	CHOL
ENSG00000260461	ENST00000568017	GCDH	ENSG00000105607	ENST00000591050	-0.1811	1869	-	CHOL
ENSG00000260461	ENST00000568017	C2	ENSG00000166278	ENST00000469372	-0.1022	1343	ESCA	CHOL
ENSG00000260461	ENST00000568017	C2	ENSG00000166278	ENST00000484636	-0.1161	1837	ESCA	CHOL
ENSG00000260461	ENST00000568017	DCXR	ENSG00000169738	ENST00000577532	-0.2179	148	-	CHOL
ENSG00000260461	ENST00000568017	DCXR	ENSG00000169738	ENST00000306869	-0.1299	1424	-	CHOL
ENSG00000260461	ENST00000568017	DCXR	ENSG00000169738	ENST00000579004	-0.1457	1922	-	CHOL
ENSG00000260461	ENST00000568017	DCXR	ENSG00000169738	ENST00000581584	-0.2031	98	-	CHOL
ENSG00000260461	ENST00000568017	DCXR	ENSG00000169738	ENST00000579821	-0.1029	1817	-	CHOL

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000260461.1	ENST00000568017.1	121	446	81

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential