 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | GOPC,MAPK1IP1L,PBX2,RBM39,ANGEL2,MSL2,WDR89,ZCCHC8,PRR3,CCDC88A,PPWD1,DMTF1,RSBN1,FAM193A,KATNBL1,RBM27,INO80D,BIVM,SF3B1,NHLRC2,FRA10AC1,ZFP14,BCLAF1,OGA,PPP4R3B,KLHL28,MSANTD2,THOC1,PAN3,CCDC14,ZC3H4,TNKS2,ZBED5,SIKE1,CCNT2,RC3H1,PTCD3,KAT6B,FAM76B,RBMX,CSTF3,MRPS31,LIX1L,RBM26,CLK2,ADNP,NCOA5,RBM25,POLG2,POLI,DDX6,PRPF39,LRIG2,GABPB1,FBXW2,DDX17,EPC1,SENP7,ACIN1,CBX1,MEX3B,ZC3H8,CTDSPL2,ANO8,CENPC,FNBP4,INPP5E,YTHDC1,RBM45,PYGO1,FAM149B1,HMGN1,TIA1,LRRC37B,MIER3,SUPT20H,KANSL1,NSUN6,ZNF8,ALG9,TRMT13,PUM2,MARCHF5,RBM5,NKTR,MBTD1,PNN,LUC7L2,CEP170,CCAR1,VCPKMT,BAZ2B,TRA2A,SEPHS1,PNISR,SFPQ,DNAJC9,ATAD2B,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | PYGO1,SIKE1,MSL2,ANGEL2,SUPT20H,USP42,INO80D,ALG9,RBM39,MAPK1IP1L,TBCEL,KPNA5,HERC4,MRPS31,EPC1,TIA1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68698754-68698845 | 228.00 | -62.19 | 89 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68699585-68699671 | 222.00 | -62.61 | 86 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68700667-68700744 | 212.00 | -51.04 | 74 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68698581-68698665 | 195.00 | -57.50 | 81 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68699783-68699858 | 192.00 | -56.07 | 83 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68699997-68700074 | 187.00 | -58.89 | 80 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68699258-68699334 | 179.00 | -52.94 | 79 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68699694-68699769 | 175.00 | -53.04 | 73 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68700342-68700433 | 173.00 | -59.35 | 84 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68699360-68699440 | 172.00 | -54.29 | 77 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68700495-68700581 | 172.00 | -63.74 | 83 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68698977-68699065 | 170.00 | -72.11 | 87 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68700571-68700650 | 165.00 | -56.22 | 76 | NA | | ENSG00000260400 | hsa-mir-29b-1 | ENST00000562082 | chr10:68699104-68699187 | 152.00 | -74.89 | 83 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68699695-68699769 | 196.00 | -52.54 | 73 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68699073-68699158 | 193.00 | -71.18 | 81 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68700496-68700582 | 185.00 | -60.87 | 80 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68699587-68699671 | 182.00 | -59.29 | 81 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68698803-68698886 | 179.00 | -55.56 | 83 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68699783-68699869 | 178.00 | -57.86 | 85 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68699419-68699498 | 175.00 | -62.62 | 82 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68698621-68698706 | 170.00 | -50.72 | 85 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68700022-68700103 | 170.00 | -51.42 | 81 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68698916-68699002 | 155.00 | -77.96 | 83 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68699283-68699361 | 150.00 | -62.80 | 75 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68699911-68700007 | 149.00 | -53.49 | 94 | NA | | ENSG00000260400 | hsa-mir-29b-2 | ENST00000562082 | chr10:68699166-68699247 | 145.00 | -55.88 | 80 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000260400.1 | ENST00000562082.1 | 91 | 98 | 373 |
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