 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ARHGEF1,GSDMB,ARL16,EPOR,TCEA2,NUP43,KRT10,TMEM234,CIRBP,PET100,MZF1,SART1,TTC31,MAPK8IP3,PPP2R3B,N4BP2L2,BCS1L,DMTF1,ACD,FAM193A,XAB2,LMBR1L,TRAPPC12,PTPRS,HSDL1,ASPRV1,ULK3,ZFP14,CENATAC,SNRPA,SAFB2,KCTD13,MSANTD2,TUBGCP6,CCDC14,CLK4,ZBED5,TTC14,SLC2A11,SVBP,GKAP1,SPRN,TAZ,SUGP1,SPG7,SIAH1,GTF2H5,USP49,OGT,RCCD1,RAB4B,PDE7A,COX19,CLK2,BRSK1,POLG2,DHX34,RING1,CHKB,METTL17,TMEM39B,BBIP1,CBY1,WDR83,OSGEP,CTC1,CLK1,MRRF,GABPB1,RABL2A,NASP,RPAIN,OFD1,ACYP1,SLC25A29,IFT172,CFAP298,PFDN6,INO80E,NPIPA5,C3orf62,ZFP82,ALKBH2,ORMDL1,YTHDC1,LPAR2,C18orf21,C22orf39,DDX51,AGER,ESS2,ORC2,SRSF2,C1orf52,CDK11A,C17orf67,LRRC37B,ATG4B,SUPT20H,CCDC191,NXF1,DCUN1D2,PAN2,FAM229A,PFDN5,GIGYF1,HMGN3,FAM193B,SLC25A28,STK25,SEC31B,CZIB,CIR1,KLHL17,NFYB,MBTD1,ARHGAP33,DNASE1,HEXD,ARHGEF7,HDAC8,VCPKMT,SCNN1D,CCDC24,SEPHS1,POLM,ZNF69,ERCC5,TRIR,FAAP100,SCNM1,OARD1,SLC26A11,FLVCR1,FANCL,ILF3,GLI4,SH2B1,C1orf159,DDX56,PRR3,FAM98C,IP6K2,PPOX,PPWD1,NPRL3,RPL23,AHI1,INO80D,BIVM,HSCB,ADPRM,ARFGAP1,MIX23,CAPN10,AP1G2,PFDN2,GLMN,THOC1,WDR59,TMEM175,NUTF2,ACBD6,TNK2,INTS11,TAMM41,GDPD3,SNRNP48,ZNF44,TRIM13,RIMKLB,LTO1,METAP1D,CWC15,IFT80,CEP83,HMGB1,FBXO44,UBN2,EXD3,LRIG2,PARP2,SBK1,PATZ1,PCED1A,MTA3,NBPF11,DYNLT2,BRF1,ACIN1,ZC3H8,THOC6,ENOSF1,UBOX5,ANKRD49,PAXBP1,LEMD2,PGBD1,PQBP1,FNBP4,DENND6B,CCHCR1,PRMT7,INPP5E,RSRP1,SGF29,NEK8,CHD2,SF3A2,CLEC2D,ATG14,ZSWIM1,FIZ1,TATDN2,LTB4R,TSNARE1,HEMK1,UPF3B,PTOV1,CLHC1,FRS3,GPBP1,C2orf68,NDUFAF7,MFF,ZNRF1,NOL4L,RBM6,TRMT13,KRTCAP2,ZNF862,IDUA,CCDC82,SREK1IP1,CBX5,GGT7,EPM2AIP1,GSTA4,ABCB6,SYNGAP1,PSME3IP1,TLE3,WDR27,SHF,EME2,SSBP3,KHDC4,DCAF15,CROCC,CERS5,RSAD1,EP400P1,USF2,PNISR,SFPQ,TRIOBP,ACAP3,AMH,CARD8,SPAG7,ENKD1,ZNF10,ATAT1,ZBTB8OS,PBX2,TRMU,CTBP1,BICRA,ATXN7L2,POC5,CHTF18,N4BP2,CDPF1,SMARCE1,KATNBL1,MKS1,C1orf35,CCDC174,MTIF3,CDK5RAP1,FOXRED1,MARCHF9,IFT88,SLX4IP,NPRL2,SUGT1,KLHDC4,CCNL2,FBXO46,DMPK,CLK3,ANKRD10,CCDC77,CHTOP,ZDHHC8,RFNG,SGSM3,CCNT2,OSBPL7,DHRS12,SEPTIN1,KAT2A,ARMC5,ACBD4,CSTF3,RBM26,PLA2G6,CSNK1E,TMEM86B,ZBTB3,CEBPZOS,RHPN1,ENDOV,DPY30,SETD6,POLI,PRPF39,ZNF34,ERMARD,KIAA0753,MIB2,EPC1,ZNF22,PHF1,HIRA,TMEM128,HDAC10,HEXIM2,CEP44,SCRN2,HSF4,ANKS3,ARGLU1,YJEFN3,ANKRD54,C10orf88,SGSM2,KRI1,RBM45,HSPBAP1,YAE1,DYRK4,R3HDM2,PMS1,PSMG4,TIA1,ZNF83,NSUN6,DNMT3A,ABCD4,PCGF2,PELP1,SAYSD1,NEIL1,DTX3,KPTN,ZMYND19,MTG2,RNF215,NAT9,NDUFA5,CRAMP1,LUC7L,KLHL22,PNN,COA5,LUC7L2,BRD8,IRF2BP2,CCAR1,MAP2K7,CENPJ,C14orf93,DPH7,POU6F1,TRA2A,POLR3F,CEP131,DUS1L,HINFP,NR2C1,APBB3,AMY2B,NRIP2,CNTROB,CYTH2,BDH2,NOP53,WBP1,RBM33,IMMP1L,AGAP6,MPHOSPH10,TAF6L,CFDP1,RBM39,EDC3,SLC25A27,MRPS26,MSL2,UBE2I,ZCCHC8,NRF1,TMEM44,ADGRL1,KAT8,ZSWIM7,PIGL,NEK3,CSAD,KIAA0895L,FSD1,ATAD3B,SAMD10,MUTYH,DCAF8,OBSL1,C2CD5,PHYKPL,FRA10AC1,RUFY3,LIN37,OGA,ZFP69,IFT27,PAN3,RECQL5,CBFA2T3,PHKG2,NARF,PMF1,SARS2,NIPSNAP3B,LRRC75B,SS18L2,TBC1D17,DCAF16,ZC3H4,SUPT7L,CENPT,OSGEPL1,ZGLP1,SHC2,SPPL3,MTG1,FAM76B,POGZ,ANAPC7,RBMX,RBM4B,MRPS31,CCDC102A,ANAPC2,BEND5,TAF1C,LCAT,SAMD1,AAAS,PIP4K2B,RNASEH2B,PRIMPOL,SMPD4,CXXC1,KCNAB3,SS18L1,ELMOD3,DDX17,GSTM2,ING4,HAUS5,SENP7,CHFR,MTRF1,RAD52,ARVCF,LIAS,FBXL12,TELO2,CDAN1,FBXL6,WSB1,POLL,FAM228B,TMEM240,WASHC1,USP21,TIGD1,KLC1,RBM10,GPS2,TRIM52,PCBP4,NOL12,CLASRP,MBD6,CWC25,STK36,HMGN1,TTC32,ZMAT1,GOLGA8B,STRADA,TAPT1,CBR4,TMA7,GOLGA8A,CYP2R1,SETD4,CNOT2,TPRKB,AARSD1,DUSP28,NACA,RBM5,NKTR,CEP162,YPEL3,VPS16,BCDIN3D,TTLL3,ZNF84,ATP5MC2,RXRB,TUBD1,C19orf18,WDR33,LRP5L,TSC1,QRICH2,DXO,HSPB11,USP20,NELFA,CCDC57,TRAPPC2,SIRT7,MRFAP1L1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | DCAF8,SGSM3,DPH7,C22orf39,CCDC174,KIZ,OSGEPL1,ZMAT1,DMPK,ORC2,KAT2A,RAD52,LMBR1L,KLHL22,CTC1,LPAR2,TRA2A,EPC1,STX16,TRMU,HEMK1,EP400NL,MRPS31,E4F1,KLHDC4,PARP2,DYRK4,KPNA5,SETD6,CWC25,BEND5,ENOSF1,CLASRP,GSTA4,LUC7L,ZFP82,MAPK8IP3,MZF1,RAD9A,C3orf62,ZSWIM1,C2CD5,CXXC1,RNASEH2B,QTRT1,FBXO46,ZFP2,KIAA0907,TMEM44,STRADA,PRR14,HSCB,ZNF69,TBKBP1,SETD4,ACCS,CHFR,C2orf68,C19orf18,KPTN,R3HDM2,MDM4,GGA1,WSB1,SLC26A11,SCNM1,ABCD4,CYTH2,SBK1,TRIOBP,ING5,HIRA,AARSD1,SENP5,SGF29,RBM6,MED28,AP4B1,CIRBP,TAZ | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | RNH1,LAMP2,CTNNB1,RAB5C,PSMD2,IRAK1,HELZ2,HSPA8,ETHE1,PLIN3,BECN1,FTH1,ATG7,DAG1,NAMPT,LRP10,IQGAP1,PKM,ATP5F1B,TPM3,MVP,EIF4G1,PSME3,PRMT5,ARPC2,TMBIM6,IKBKG,ABHD5,PSMD1,PSMC1,POR,CAP1,CLTC,ALAS1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000260296 | ENST00000567102 | exon_skip_111863 | chr14:23565815-23565892 | -9.85 | -0.1331 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000260296 | ENST00000567102 | exon_skip_324294 | chr2:27774423-27774530 | -9.01 | -0.1306 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000260296 | ENST00000567102 | exon_skip_348254 | chr2:241680228-241680319 | -10.22 | -0.1217 | DTYMK | ENST00000305784 | Frame-shift | | ENSG00000260296 | ENST00000567102 | exon_skip_382458 | chr3:38131595-38131638 | -5.73 | -0.3371 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000260296 | ENST00000567102 | exon_skip_53559 | chr10:101793912-101793998 | -7.80 | -0.1026 | OGA | ENST00000361464 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000260296 | ENSG00000004777 | ARHGAP33 | CHOL,GBM,LGG,PCPG,PRAD,THCA,THYM,UCS | PCPG | | | ENSG00000260296 | ENSG00000006025 | OSBPL7 | CHOL,DLBC,GBM,LGG,PCPG,PRAD,SARC | PCPG | | | ENSG00000260296 | ENSG00000099889 | ARVCF | CHOL,GBM,LGG,PCPG,PRAD,THCA | PCPG | | | ENSG00000260296 | ENSG00000104899 | AMH | CHOL,DLBC,GBM,LGG,PCPG | PCPG | | | ENSG00000260296 | ENSG00000131584 | ACAP3 | CHOL,GBM,LGG,PCPG,PRAD | PCPG | | | ENSG00000260296 | ENSG00000132017 | DCAF15 | CHOL,GBM,LGG,PCPG,PRAD,THYM,UCS | PCPG | | | ENSG00000260296 | ENSG00000138834 | MAPK8IP3 | CHOL,GBM,PCPG,PRAD,THCA,THYM,UCEC | PCPG | | | ENSG00000260296 | ENSG00000139266 | MARCHF9 | CHOL,GBM,PCPG,THCA,THYM,UCS | PCPG | | | ENSG00000260296 | ENSG00000171703 | TCEA2 | CHOL,DLBC,LGG,PCPG,PRAD,THCA,UCS | PCPG | | | ENSG00000260296 | ENSG00000174943 | KCTD13 | CHOL,DLBC,GBM,LGG,PCPG,TGCT,UCS | PCPG | | | ENSG00000260296 | ENSG00000178026 | LRRC75B | CHOL,GBM,LGG,PCPG,PRAD,THCA,UCEC,UCS | PCPG | | | ENSG00000260296 | ENSG00000180096 | SEPTIN1 | CHOL,DLBC,PCPG,PRAD,THYM | PCPG | | | ENSG00000260296 | ENSG00000184271 | POU6F1 | CHOL,GBM,LGG,PCPG,PRAD,TGCT,THCA,UCEC | PCPG | | | ENSG00000260296 | ENSG00000187961 | KLHL17 | CHOL,GBM,LGG,PCPG,PRAD,THYM | PCPG | | | ENSG00000260296 | ENSG00000196459 | TRAPPC2 | CHOL,LAML,LGG,PCPG,THCA,THYM | PCPG | | | ENSG00000260296 | ENSG00000105255 | FSD1 | DLBC,GBM,LGG,PCPG,TGCT,THYM | PCPG | | | ENSG00000260296 | ENSG00000213918 | DNASE1 | DLBC,GBM,LAML,LGG,PCPG,PRAD,SARC,THCA,THYM,UCEC,UCS | PCPG | | | ENSG00000260296 | ENSG00000129946 | SHC2 | GBM,LGG,PCPG,PRAD,SARC | PCPG | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000260296 | ENST00000567102 | EIF4G1 | ENSG00000114867 | ENST00000382330 | -0.1228 | 77 | - | PCPG | | ENSG00000260296 | ENST00000567102 | MVP | ENSG00000013364 | ENST00000395353 | -0.1289 | 386 | - | PCPG | | ENSG00000260296 | ENST00000567102 | MVP | ENSG00000013364 | ENST00000357402 | -0.1289 | 386 | - | PCPG | | ENSG00000260296 | ENST00000567102 | MVP | ENSG00000013364 | ENST00000566859 | -0.1008 | 376 | - | PCPG | | ENSG00000260296 | ENST00000567102 | TMBIM6 | ENSG00000139644 | ENST00000552370 | -0.2785 | 886 | - | PCPG |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000260296.1 | ENST00000567102.1 | 69 | 7 | 216 |
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