Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000260196

Summary for RP1-239B22.5

Gene summary

Gene information	Ensembl ID	ENSG00000260196
	Gene symbol	RP1-239B22.5
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

Top

Structure and expression level for RP1-239B22.5

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000260196	1.995491e+02	2.751565e+00	6.033959e-01	4.560132e+00	5.110000e-06	2.940000e-05	UP	CHOL
ENSG00000260196	4.053221e+02	1.186329e+00	1.343818e-01	8.828048e+00	1.070000e-18	5.970000e-18	UP	KIRC
ENSG00000260196	1.321585e+03	3.545665e+00	2.084534e-01	1.700939e+01	7.000000e-65	1.930000e-62	UP	KICH
ENSG00000260196	4.475900e+02	1.224643e+00	1.944037e-01	6.299484e+00	2.990000e-10	2.250000e-09	UP	KIRP
ENSG00000260196	4.187459e+02	1.252073e+00	1.361778e-01	9.194397e+00	3.770000e-20	5.090000e-19	UP	COAD
ENSG00000260196	3.998361e+02	1.610425e+00	2.281600e-01	7.058315e+00	1.690000e-12	3.240000e-11	UP	STAD
ENSG00000260196	4.909700e+02	1.147205e+00	2.804746e-01	4.090229e+00	4.310000e-05	3.594920e-04	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000260196	4.297734e-01	3.215320e-03	CHOL	4.484385e-03
ENSG00000260196	5.051875e-01	4.442139e-07	KICH	1.377465e-06

Top

lncRNA-Protein interaction for RP1-239B22.5

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000105821	DNAJC2	37.34	95.0674	Q99543	Epi	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000106462	EZH2	69.37	96.0528	Q15910	Epi	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000123485	HJURP	66.82	95.6214	Q8NCD3	Epi	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000133895	MEN1	23.28	91.0478	O00255	Epi	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000101442	ACTR5	11.12	90.0562	Q9H9F9	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000167967	E4F1	92.72	94.0408	Q66K89	TF	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000130254	SAFB2	88.82	96.5763	Q14151	TF,RBP	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000170515	PA2G4	24.94	91.3067	Q9UQ80	TF,RBP	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000136936	XPA	13.25	91.6226	P23025	TF	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000250571	GLI4	9.1	92.7813	P10075	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000111641	NOP2	96.6	93.6963	P46087	RBP	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000130254	SAFB2	88.82	96.5017	Q14151	TF,RBP	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000004534	RBM6	88.19	96.7357	P78332	RBP	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000105705	SUGP1	34.99	93.8715	Q8IWZ8	RBP	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000170515	PA2G4	24.94	90.383	Q9UQ80	TF,RBP	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000105671	DDX49	24.52	91.3645	Q9Y6V7	RBP	NA
ENSG00000260196	ENST00000568280	RP1-239B22.5	ENSG00000101361	NOP56	16.41	93.5896	O00567	RBP	NA

Top

lncRNA-DNA interaction for RP1-239B22.5

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

SKA3,SLIRP,NDUFS3,ARFIP2,THAP4,POLD2,PLLP,PSMB7,PET100,SART1,ATP5MG,DPM2,TRUB2,HINT2,MRPL46,B3GAT3,MRPS12,NDUFB9,NDUFA11,CDCA5,METTL5,CENATAC,BZW2,SMUG1,SAFB2,APTX,CHKA,C6orf136,UBE2T,LAMTOR2,ZBED5,GLRX2,TPRN,NDUFA3,RECQL4,COA4,KNSTRN,GATD1,SPRN,MICOS13,TAZ,SUGP1,SPG7,UQCR11,THEM6,PSMD13,DNAJC2,TMEM208,COX19,SLC43A1,UQCC2,BBC3,WDR83,MRRF,WDR5,ANKRD39,HSPE1,MRPS11,ACYP1,TOMM40,IQGAP3,GAR1,CGREF1,TSSC4,DDX49,C19orf48,PFDN6,MFSD3,FANCF,ATP5MK,BAG1,CLPP,C12orf73,DDX51,TOP1MT,PPFIBP2,CDK11A,TSEN54,UBE2C,ALG8,UQCC1,COX6C,SGTA,DUS3L,CCDC167,EBPL,NOP2,SLC25A39,NDUFB1,NOL3,ARFGAP2,RABL6,CDCA7,STN1,COA6,SDHAF2,TUFM,IDH3B,MRPS25,ILVBL,EIF3K,CCDC34,AKAP1,COX7A2,SLC22A18,SELENOI,MRPL52,MMAB,PES1,GLI4,TTC17,NDUFB8,COX6B1,SNRNP25,KIF18A,DDX56,NDUFS8,COX5A,SCN1B,BOP1,CD63,NDUFB11,DBF4,YIF1A,FASTKD1,TIMM44,UCHL3,MIX23,CAPN10,TMX2,THOC1,SURF1,NUBP2,PTGES2,GNPTG,PVR,CISD1,EZH2,NECAB3,PSMC3,LTO1,POLR3K,PIDD1,AP5Z1,METTL1,CWC15,PPA2,GGCT,ATP5F1C,DOHH,C11orf98,PGP,BRMS1,MRPS15,MYDGF,ZC3H8,THOC6,MPND,PQBP1,TMEM186,ATF4,INPP5E,TOMM22,SLC35C2,MBD3,AURKA,SERF2,CRACR2B,TSG101,CIAO2A,VPS28,CHRAC1,TRPT1,EIF3B,EBP,NUDT22,RABEP2,NDUFA12,RTN4R,NDUFAF5,HMBS,NPM3,NCR3LG1,MKKS,CKMT1B,PSME3IP1,NAP1L4,PPP1R14B,NDUFA6,SLC25A3,ISOC2,DHRS11,RP9,MCM4,SRA1,ACADS,BLOC1S1,TBRG4,NDUFS6,ATP5F1E,TRMU,CTBP1,MRPL34,PSMA2,SEM1,TIGD5,NDUFV1,MRPL47,TAF1D,C1orf35,HES6,TIMM13,CDK5RAP1,NDUFA7,FOXRED1,BUD23,PSMG1,MRPL2,RDH13,KLHDC4,GFER,UQCRB,LSM5,DDTL,DSCC1,SGSM3,COQ4,RRM1,ECI1,TMEM223,CSTF3,PLA2G6,COMTD1,NR2F6,ENTR1,COPE,MRPL11,GARS1,FAM50A,ITPA,COX7B,TMEM41B,HSPD1,SLC3A2,UTP3,ABHD11,DEAF1,HSF4,ANKS3,NOXA1,MRPL17,NDUFA10,UCK1,FH,ANKRD54,TAF10,COX4I1,TMEM60,YAE1,MESP1,PSMG4,SAAL1,HCN3,SFXN4,MCRIP2,MRPL27,MEN1,UQCR10,RILP,MYG1,ZMYND19,NAT9,ATP5MC3,LUC7L,DSN1,PPAN,CENPJ,COQ9,TRIB3,TRA2A,RNF126,ATP5F1D,ATP5PF,MAPKAPK5,RPS13,MRPL43,DUS1L,XPA,PDSS1,WDR74,RCOR2,NDUFAF8,FKBP2,IMMP1L,NDUFB10,AGAP6,CHEK2,PRDX5,BOLA3,SLC29A2,C15orf61,CYCS,TXN2,MRPS26,TMEM161A,IMP3,NDUFAB1,GADD45GIP1,ICA1,HRAS,CHCHD7,RBPMS2,DDX39A,ATAD3B,SAMD10,NDUFA4,HJURP,FBXO10,NUCB2,NDUFAF4,PHKG2,TIMM10,POLR2J,PPP1R16A,SS18L2,MAPK12,PTPMT1,PA2G4,CRLS1,IAH1,LSM4,SNRPB,PUS3,ADAT2,MYO19,ATP5MJ,SAMD1,PAICS,TXNDC17,ANKRD9,CAPN15,FA2H,CLNS1A,PLEKHJ1,TXNL4A,TMEM129,DGLUCY,NDUFB7,UAP1,NSUN5,DCAF13,ELOC,AIFM2,RRP8,DGAT1,CLN6,THYN1,MRPS18C,EIF2AK1,PEX16,FBXL6,LRFN4,AUP1,ANO9,NSMF,CHCHD10,NDUFC1,NOL12,MICAL1,NDUFA8,GOLGA8B,LONP1,GSS,RPS24,NDUFB6,CYP2R1,PAM16,MACROD1,SOX12,SETD4,SPIRE2,SAPCD2,CARD19,RNPEPL1,RPS27L,AARSD1,DUSP28,RPS19BP1,SMIM4,TOMM5,TMEM11,SF3B2,ATP5MC2,SIRT6,ZNRD2,MRPL54,LRRC45,FAM174C,SNRPB2

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for RP1-239B22.5

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

SMAD1,MICALL1,WASF2,SEC14L1,ANTXR2,UTRN,CTNNB1,QKI,VPS35L,HBP1,NIN,MYH9,SNX29,HSPG2,ACTN4,MAP3K3,TAB2,CYTH4,CYFIP1,SH3BP5,LRP10,DOCK7,SSH1,EVC,SNX18,TINF2,BTD,SF3A1,NOTCH2,RAB7A,CNN2,GNAI2,KLHL5,MAML2,ABHD5,MKLN1,AZI2,CTDSP2,AHNAK,PRMT2,EMC1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000260196	ENST00000568280	exon_skip_37475	chr1:225504990-225505053	-8.99	-0.1450	ENAH	ENST00000366844	In-frame
ENSG00000260196	ENST00000568280	exon_skip_44998	chr10:110132304-110132400	-11.68	-0.1497	ADD3	ENST00000356080	In-frame
ENSG00000260196	ENST00000568280	exon_skip_114200	chr14:73279280-73279424	-18.78	-0.1565	NUMB	ENST00000355058,ENST00000555238	In-frame
ENSG00000260196	ENST00000568280	exon_skip_456460	chr6:17771113-17771218	-16.59	-0.2552	KIF13A	ENST00000259711	In-frame
ENSG00000260196	ENST00000568280	exon_skip_386291	chr3:108050577-108050602	-8.11	-0.6758	CD47	ENST00000361309	Frame-shift

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000260196	ENST00000568280	exon_skip_5818	chr1:45568484-45568684	-22.09	-0.1624	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift
ENSG00000260196	ENST00000568280	exon_skip_75223	chr11:72012400-72012442	-8.86	-0.3544	NUMA1	ENST00000393695	In-frame
ENSG00000260196	ENST00000568280	exon_skip_96112	chr12:109945259-109945349	-17.28	-0.2658	GIT2	ENST00000355312	In-frame
ENSG00000260196	ENST00000568280	exon_skip_111063	chr14:21022863-21022905	-12.06	-0.3769	NDRG2	ENST00000298687,ENST00000397851,ENST00000397853,ENST00000397858,ENST00000556147	In-frame
ENSG00000260196	ENST00000568280	exon_skip_111672	chr14:23089981-23090101	-17.16	-0.1604	ACIN1	ENST00000262710	In-frame
ENSG00000260196	ENST00000568280	exon_skip_287874	chr17:29085603-29085648	-9.01	-0.2650	MYO18A	ENST00000527372	In-frame
ENSG00000260196	ENST00000568280	exon_skip_301267	chr19:6746028-6746196	-26.80	-0.1740	TRIP10	ENST00000313244	In-frame
ENSG00000260196	ENST00000568280	exon_skip_382356	chr3:37091466-37091538	-13.90	-0.2623	LRRFIP2	ENST00000336686	In-frame
ENSG00000260196	ENST00000568280	exon_skip_445390	chr5:150403120-150403312	-23.41	-0.1454	CD74	ENST00000009530	In-frame
ENSG00000260196	ENST00000568280	exon_skip_508298	chr9:136445051-136445111	-7.93	-0.1652	SEC16A	ENST00000313050	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for RP1-239B22.5

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000260196	ENSG00000006634	DBF4	ACC,ESCA,KICH,STAD,THYM	KICH,STAD
ENSG00000260196	ENSG00000040608	RTN4R	ACC,KICH,LGG,PAAD,SARC	KICH
ENSG00000260196	ENSG00000077152	UBE2T	ACC,PAAD,STAD,THYM,UCS,UVM	STAD
ENSG00000260196	ENSG00000087586	AURKA	ACC,COAD,ESCA,KICH,READ,THYM,UVM	COAD,KICH,READ
ENSG00000260196	ENSG00000101255	TRIB3	ACC,DLBC,LAML,PAAD,STAD	STAD
ENSG00000260196	ENSG00000104738	MCM4	ACC,COAD,READ,THYM,UVM	COAD,READ
ENSG00000260196	ENSG00000106462	EZH2	ACC,READ,STAD,THYM,UVM	READ,STAD
ENSG00000260196	ENSG00000106628	POLD2	ACC,CHOL,COAD,DLBC,PAAD,THYM	COAD
ENSG00000260196	ENSG00000110717	NDUFS8	ACC,CHOL,DLBC,KICH,KIRP,PAAD	KICH
ENSG00000260196	ENSG00000110721	CHKA	ACC,ESCA,KICH,KIRC,KIRP,UVM	KICH
ENSG00000260196	ENSG00000118939	UCHL3	ACC,COAD,DLBC,PAAD,READ,STAD,THYM,UVM	COAD
ENSG00000260196	ENSG00000121621	KIF18A	ACC,READ,STAD,THYM,UCS	READ,STAD
ENSG00000260196	ENSG00000123415	SMUG1	ACC,KICH,LGG,PAAD,THYM,UCS	KICH
ENSG00000260196	ENSG00000123485	HJURP	ACC,COAD,READ,STAD,THYM	COAD,READ,STAD
ENSG00000260196	ENSG00000124172	ATP5F1E	ACC,CHOL,COAD,DLBC,KICH,KIRP,THYM,UVM	KICH
ENSG00000260196	ENSG00000128944	KNSTRN	ACC,STAD,THYM,UCS,UVM	STAD
ENSG00000260196	ENSG00000131368	MRPS25	ACC,CHOL,COAD,KICH,KIRP,LGG,PAAD,STAD	KICH
ENSG00000260196	ENSG00000133316	WDR74	ACC,COAD,DLBC,LGG,THYM,UCS	COAD
ENSG00000260196	ENSG00000135404	CD63	ACC,CHOL,ESCA,KICH,PAAD	KICH
ENSG00000260196	ENSG00000142327	RNPEPL1	ACC,CHOL,KICH,KIRP,PAAD,THYM	KIRP
ENSG00000260196	ENSG00000142330	CAPN10	ACC,COAD,ESCA,KICH,KIRC,PAAD,READ,THYM,UVM	READ
ENSG00000260196	ENSG00000144381	HSPD1	ACC,COAD,ESCA,READ,STAD,UVM	COAD,READ,STAD
ENSG00000260196	ENSG00000147912	FBXO10	ACC,KICH,LAML,LGG,UVM	KICH
ENSG00000260196	ENSG00000148334	PTGES2	ACC,CHOL,KICH,KIRC,KIRP,LGG,PAAD,UCS	KICH
ENSG00000260196	ENSG00000149761	NUDT22	ACC,CHOL,KICH,KIRP,PAAD,THYM	KICH
ENSG00000260196	ENSG00000156381	ANKRD9	ACC,KICH,KIRP,PAAD,SARC	KICH
ENSG00000260196	ENSG00000160072	ATAD3B	ACC,COAD,DLBC,ESCA,PAAD,UCS,UVM	COAD
ENSG00000260196	ENSG00000165480	SKA3	ACC,COAD,ESCA,READ,STAD,THYM	COAD,READ,STAD
ENSG00000260196	ENSG00000165802	NSMF	ACC,COAD,KIRC,KIRP,UCS,UVM	COAD
ENSG00000260196	ENSG00000166012	TAF1D	ACC,DLBC,ESCA,LGG,READ,STAD,THYM	READ
ENSG00000260196	ENSG00000168003	SLC3A2	ACC,COAD,KICH,KIRC,LAML	COAD,KICH
ENSG00000260196	ENSG00000168569	TMEM223	ACC,CHOL,DLBC,KICH,KIRP,SARC,THYM,UCS,UVM	KICH
ENSG00000260196	ENSG00000173457	PPP1R14B	ACC,CHOL,COAD,DLBC,KICH,KIRP,THYM	CHOL,KICH,KIRP
ENSG00000260196	ENSG00000174669	SLC29A2	ACC,CHOL,COAD,ESCA,KICH,LAML,PAAD,READ	KICH,READ
ENSG00000260196	ENSG00000178741	COX5A	ACC,CHOL,DLBC,KICH,KIRP,LGG,PAAD,SARC,THYM,UVM	KICH
ENSG00000260196	ENSG00000182173	TSEN54	ACC,CHOL,COAD,ESCA,PAAD,READ	CHOL,READ
ENSG00000260196	ENSG00000183856	IQGAP3	ACC,COAD,ESCA,READ,STAD,UVM	COAD,READ,STAD
ENSG00000260196	ENSG00000184076	UQCR10	ACC,CHOL,DLBC,KICH,KIRP,PAAD,SARC,THYM,UVM	KICH
ENSG00000260196	ENSG00000186166	CENATAC	ACC,COAD,ESCA,KICH,KIRC,READ,THYM	KIRC,READ
ENSG00000260196	ENSG00000186193	SAPCD2	ACC,CESC,DLBC,KICH,LAML,LGG,PAAD,THYM	KICH
ENSG00000260196	ENSG00000228300	FAM174C	ACC,CHOL,DLBC,KICH,PAAD	KICH
ENSG00000260196	ENSG00000278259	MYO19	ACC,COAD,KICH,KIRC,LAML,READ,UVM	KICH
ENSG00000260196	ENSG00000133943	DGLUCY	CESC,CHOL,KICH,KIRP,UVM	KICH
ENSG00000260196	ENSG00000005075	POLR2J	CHOL,DLBC,KICH,KIRP,PAAD,THYM	KICH,KIRP
ENSG00000260196	ENSG00000071859	FAM50A	CHOL,ESCA,KICH,KIRC,KIRP	KICH,KIRP
ENSG00000260196	ENSG00000075415	SLC25A3	CHOL,KICH,LAML,LGG,THYM	KICH
ENSG00000260196	ENSG00000077463	SIRT6	CHOL,ESCA,KICH,KIRC,LGG,PAAD,THYM	CHOL
ENSG00000260196	ENSG00000080189	SLC35C2	CHOL,COAD,KICH,LAML,PAAD,READ	READ
ENSG00000260196	ENSG00000088682	COQ9	CHOL,KICH,KIRC,KIRP,LGG,PAAD,SARC,UVM	KICH
ENSG00000260196	ENSG00000102934	PLLP	CHOL,ESCA,KICH,KIRC,PAAD	CHOL,KICH
ENSG00000260196	ENSG00000103326	CAPN15	CHOL,KICH,KIRC,PAAD,UCS,UVM	KICH,KIRC
ENSG00000260196	ENSG00000104980	TIMM44	CHOL,COAD,KICH,KIRC,KIRP,LAML,PAAD,UVM	KICH
ENSG00000260196	ENSG00000105669	COPE	CHOL,KICH,KIRP,PAAD,THYM	KICH
ENSG00000260196	ENSG00000105711	SCN1B	CHOL,DLBC,KICH,SARC,UVM	KICH
ENSG00000260196	ENSG00000106077	ABHD11	CHOL,ESCA,KICH,PAAD,SARC,UVM	CHOL,KICH
ENSG00000260196	ENSG00000109881	CCDC34	CHOL,COAD,ESCA,KICH,LAML,PAAD,READ,STAD,THYM,UCS	CHOL,KICH,STAD
ENSG00000260196	ENSG00000119421	NDUFA8	CHOL,KICH,KIRC,KIRP,LGG,SARC,UCS,UVM	KICH
ENSG00000260196	ENSG00000125835	SNRPB	CHOL,KICH,PAAD,SARC,STAD,THYM,UCS,UVM	CHOL,KICH
ENSG00000260196	ENSG00000127554	GFER	CHOL,DLBC,KICH,KIRP,LGG,PAAD,SARC	KICH
ENSG00000260196	ENSG00000128973	CLN6	CHOL,KICH,KIRC,PAAD,SARC,THYM	KICH
ENSG00000260196	ENSG00000130204	TOMM40	CHOL,DLBC,KICH,KIRP,LAML,PAAD,THYM,UCS,UVM	KICH
ENSG00000260196	ENSG00000130305	NSUN5	CHOL,COAD,KIRP,PAAD,SARC,THYM	KIRP
ENSG00000260196	ENSG00000130312	MRPL34	CHOL,KICH,KIRP,PAAD,THYM,UVM	KICH
ENSG00000260196	ENSG00000131143	COX4I1	CHOL,DLBC,KICH,KIRP,LGG,PAAD,SARC,THYM	KICH
ENSG00000260196	ENSG00000131174	COX7B	CHOL,DLBC,KICH,KIRP,LGG,PAAD,SARC,UVM	KICH
ENSG00000260196	ENSG00000141858	SAMD1	CHOL,COAD,LGG,PAAD,THYM,UCS	CHOL
ENSG00000260196	ENSG00000149150	SLC43A1	CHOL,COAD,DLBC,ESCA,READ,STAD	COAD,READ
ENSG00000260196	ENSG00000160439	RDH13	CHOL,ESCA,KICH,PAAD,UVM	CHOL,KICH
ENSG00000260196	ENSG00000164919	COX6C	CHOL,COAD,DLBC,ESCA,KICH,KIRP,LAML,PAAD,READ,SARC,STAD,THYM,UVM	KICH
ENSG00000260196	ENSG00000165644	COMTD1	CHOL,DLBC,KICH,KIRP,LGG,PAAD,UVM	KICH
ENSG00000260196	ENSG00000166337	TAF10	CHOL,DLBC,KICH,KIRP,PAAD,THYM,UCS	KICH
ENSG00000260196	ENSG00000167705	RILP	CHOL,ESCA,KICH,KIRC,KIRP,PAAD	KICH
ENSG00000260196	ENSG00000167747	C19orf48	CHOL,KICH,LAML,PAAD,THYM	CHOL,KICH
ENSG00000260196	ENSG00000168096	ANKS3	CHOL,COAD,KIRC,KIRP,LGG,READ,UVM	CHOL,KIRP,READ
ENSG00000260196	ENSG00000170906	NDUFA3	CHOL,DLBC,ESCA,KICH,KIRP,PAAD	KICH
ENSG00000260196	ENSG00000172115	CYCS	CHOL,DLBC,ESCA,KICH,KIRP,PAAD,SARC,STAD,UCS,UVM	KICH
ENSG00000260196	ENSG00000172366	MCRIP2	CHOL,ESCA,KICH,KIRC,KIRP,LGG,PAAD,SARC,UCS	KICH
ENSG00000260196	ENSG00000176058	TPRN	CHOL,ESCA,KIRP,LAML,PAAD,SARC	CHOL
ENSG00000260196	ENSG00000177225	GATD1	CHOL,COAD,DLBC,ESCA,KICH,KIRC,KIRP,PAAD,SARC	KICH
ENSG00000260196	ENSG00000177548	RABEP2	CHOL,KICH,KIRC,KIRP,PAAD,THYM	CHOL,KICH
ENSG00000260196	ENSG00000177595	PIDD1	CHOL,COAD,KICH,KIRP,LGG,THYM	KIRP
ENSG00000260196	ENSG00000183527	PSMG1	CHOL,COAD,SARC,STAD,THYM,UCS,UVM	COAD
ENSG00000260196	ENSG00000183765	CHEK2	CHOL,COAD,READ,STAD,UVM	STAD
ENSG00000260196	ENSG00000184752	NDUFA12	CHOL,DLBC,KICH,KIRP,LGG,THYM,UVM	KICH
ENSG00000260196	ENSG00000188130	MAPK12	CHOL,DLBC,LGG,UCS,UVM	CHOL
ENSG00000260196	ENSG00000189227	C15orf61	CHOL,DLBC,KICH,KIRP,LGG	KICH
ENSG00000260196	ENSG00000196365	LONP1	CHOL,KICH,LAML,LGG,UCS	KICH
ENSG00000260196	ENSG00000203772	SPRN	CHOL,COAD,KIRP,LGG,PAAD,READ,UCS,UVM	READ
ENSG00000260196	ENSG00000250479	CHCHD10	CHOL,DLBC,KICH,KIRC,KIRP,LAML,PAAD,SARC,UCS	KICH
ENSG00000260196	ENSG00000003147	ICA1	COAD,ESCA,KICH,PAAD,STAD,UVM	KICH
ENSG00000260196	ENSG00000006625	GGCT	COAD,DLBC,PAAD,READ,STAD	COAD
ENSG00000260196	ENSG00000037897	METTL1	COAD,DLBC,LAML,READ,UVM	COAD,READ
ENSG00000260196	ENSG00000073008	PVR	COAD,ESCA,KICH,LAML,UVM	KICH
ENSG00000260196	ENSG00000100983	GSS	COAD,KIRP,PAAD,READ,THYM,UVM	KIRP
ENSG00000260196	ENSG00000101391	CDK5RAP1	COAD,ESCA,READ,STAD,THYM	COAD,READ
ENSG00000260196	ENSG00000102125	TAZ	COAD,KICH,KIRC,KIRP,THYM,UVM	KIRC,KIRP
ENSG00000260196	ENSG00000105821	DNAJC2	COAD,DLBC,PAAD,READ,STAD,UVM	COAD,READ,STAD
ENSG00000260196	ENSG00000106105	GARS1	COAD,DLBC,PAAD,STAD,THYM,UVM	COAD
ENSG00000260196	ENSG00000109065	NAT9	COAD,ESCA,KIRP,LGG,PAAD	COAD
ENSG00000260196	ENSG00000123179	EBPL	COAD,DLBC,LGG,READ,STAD,THYM,UVM	COAD,READ
ENSG00000260196	ENSG00000125967	NECAB3	COAD,KICH,KIRP,LAML,LGG	KICH
ENSG00000260196	ENSG00000127922	SEM1	COAD,DLBC,KICH,PAAD,READ,THYM,UVM	KICH
ENSG00000260196	ENSG00000128050	PAICS	COAD,READ,STAD,THYM,UCS,UVM	COAD,READ,STAD
ENSG00000260196	ENSG00000130590	SAMD10	COAD,DLBC,KICH,KIRC,LGG,PAAD,READ,SARC	COAD,KICH,READ
ENSG00000260196	ENSG00000130810	PPAN	COAD,DLBC,KICH,PAAD,UVM	KICH
ENSG00000260196	ENSG00000136982	DSCC1	COAD,READ,STAD,THYM,UVM	COAD,READ,STAD
ENSG00000260196	ENSG00000138028	CGREF1	COAD,ESCA,LGG,READ,UVM	COAD,READ
ENSG00000260196	ENSG00000143630	HCN3	COAD,KIRC,KIRP,LGG,READ,STAD	READ
ENSG00000260196	ENSG00000144354	CDCA7	COAD,PAAD,READ,STAD,THYM	COAD,READ,STAD
ENSG00000260196	ENSG00000149636	DSN1	COAD,ESCA,READ,STAD,THYM,UVM	COAD,READ,STAD
ENSG00000260196	ENSG00000151849	CENPJ	COAD,READ,STAD,THYM,UVM	COAD,READ
ENSG00000260196	ENSG00000164934	DCAF13	COAD,DLBC,READ,STAD,THYM,UCS,UVM	COAD,READ,STAD
ENSG00000260196	ENSG00000165689	ENTR1	COAD,DLBC,KICH,KIRC,UCS,UVM	COAD
ENSG00000260196	ENSG00000165724	ZMYND19	COAD,DLBC,KICH,KIRC,LAML,PAAD,READ,THYM,UCS	COAD,KICH,READ
ENSG00000260196	ENSG00000173621	LRFN4	COAD,DLBC,KICH,LAML,LGG,UVM	COAD,KICH
ENSG00000260196	ENSG00000175063	UBE2C	COAD,READ,STAD,THYM,UVM	COAD,READ,STAD
ENSG00000260196	ENSG00000182325	FBXL6	COAD,LAML,PAAD,STAD,THYM,UCS,UVM	COAD
ENSG00000260196	ENSG00000184428	TOP1MT	COAD,LAML,PAAD,READ,STAD,THYM	COAD,READ,STAD
ENSG00000260196	ENSG00000185101	ANO9	COAD,ESCA,KIRC,PAAD,READ,STAD,UVM	COAD,KIRC,READ
ENSG00000260196	ENSG00000188211	NCR3LG1	COAD,ESCA,KICH,KIRC,LAML,LGG,READ,STAD	COAD,KICH,STAD
ENSG00000260196	ENSG00000189007	ADAT2	COAD,ESCA,LAML,READ,STAD,THYM	COAD,READ,STAD
ENSG00000260196	ENSG00000204149	AGAP6	COAD,ESCA,READ,STAD,THYM,UVM	READ
ENSG00000260196	ENSG00000204991	SPIRE2	COAD,ESCA,KICH,LGG,PAAD,READ	KICH
ENSG00000260196	ENSG00000240230	COX19	COAD,ESCA,KICH,PAAD,READ,STAD	KICH,READ
ENSG00000260196	ENSG00000241127	YAE1	COAD,ESCA,PAAD,STAD,UCS,UVM	COAD
ENSG00000260196	ENSG00000242802	AP5Z1	COAD,ESCA,KICH,PAAD,THYM	KICH
ENSG00000260196	ENSG00000261236	BOP1	COAD,DLBC,LAML,LGG,STAD,THYM,UCS	COAD,STAD
ENSG00000260196	ENSG00000273899	NOL12	COAD,KICH,KIRC,PAAD,THYM	KIRC
ENSG00000260196	ENSG00000156411	ATP5MJ	DLBC,KICH,KIRP,PAAD,THYM,UVM	KICH
ENSG00000260196	ENSG00000184207	PGP	DLBC,KICH,KIRP,LAML,PAAD,THYM,UCS,UVM	KICH
ENSG00000260196	ENSG00000099974	DDTL	ESCA,KICH,KIRC,LGG,PAAD,READ,UVM	KICH
ENSG00000260196	ENSG00000103089	FA2H	ESCA,KICH,KIRC,PAAD,THYM	KICH
ENSG00000260196	ENSG00000070081	NUCB2	KICH,LAML,LGG,SARC,THYM,UVM	KICH
ENSG00000260196	ENSG00000105327	BBC3	KICH,PAAD,SARC,THYM,UCS	KICH
ENSG00000260196	ENSG00000122971	ACADS	KICH,KIRC,KIRP,PAAD,THYM	KICH
ENSG00000260196	ENSG00000129932	DOHH	KICH,KIRC,KIRP,PAAD,THYM	KICH
ENSG00000260196	ENSG00000166387	PPFIBP2	KICH,KIRC,LGG,PAAD,READ	KICH
ENSG00000260196	ENSG00000167771	RCOR2	KICH,LGG,PAAD,THYM,UVM	KICH

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000260196	ENST00000568280	VPS35L	ENSG00000103544	ENST00000542263	-0.1096	1686	-	COAD,READ
ENSG00000260196	ENST00000568280	VPS35L	ENSG00000103544	ENST00000417362	-0.1096	1686	-	COAD,READ
ENSG00000260196	ENST00000568280	VPS35L	ENSG00000103544	ENST00000567245	-0.1898	1707	-	COAD,READ
ENSG00000260196	ENST00000568280	ABHD5	ENSG00000011198	ENST00000413300	-0.1663	1933	-	CHOL,COAD
ENSG00000260196	ENST00000568280	ANTXR2	ENSG00000163297	ENST00000404191	-0.1796	405	-	CHOL,KICH,COAD,STAD,READ
ENSG00000260196	ENST00000568280	ANTXR2	ENSG00000163297	ENST00000346652	-0.2507	2531	-	CHOL,KICH,COAD,STAD,READ
ENSG00000260196	ENST00000568280	BTD	ENSG00000169814	ENST00000449107	-0.1968	2455	-	CHOL,COAD,STAD
ENSG00000260196	ENST00000568280	BTD	ENSG00000169814	ENST00000437172	-0.1100	1733	-	CHOL,COAD,STAD
ENSG00000260196	ENST00000568280	EVC	ENSG00000072840	ENST00000509451	-0.1383	1891	-	KIRC,KICH,READ
ENSG00000260196	ENST00000568280	MICALL1	ENSG00000100139	ENST00000424008	-0.1126	1756	-	STAD
ENSG00000260196	ENST00000568280	AHNAK	ENSG00000124942	ENST00000530124	-0.1190	1638	-	COAD,STAD,READ
ENSG00000260196	ENST00000568280	SNX18	ENSG00000178996	ENST00000326277	-0.1548	357	-	CHOL,KIRP
ENSG00000260196	ENST00000568280	SH3BP5	ENSG00000131370	ENST00000450625	-0.1078	1874	-	CHOL,KICH,KIRP
ENSG00000260196	ENST00000568280	NOTCH2	ENSG00000134250	ENST00000579475	-0.1540	1229	-	KICH
ENSG00000260196	ENST00000568280	HSPG2	ENSG00000142798	ENST00000374676	-0.1596	2059	-	KIRP
ENSG00000260196	ENST00000568280	HSPG2	ENSG00000142798	ENST00000412328	-0.1907	1870	-	KIRP
ENSG00000260196	ENST00000568280	HSPG2	ENSG00000142798	ENST00000439717	-0.2246	1772	-	KIRP
ENSG00000260196	ENST00000568280	UTRN	ENSG00000152818	ENST00000367526	-0.5100	345	-	KICH,KIRP
ENSG00000260196	ENST00000568280	MAML2	ENSG00000184384	ENST00000618849	-0.1294	1026	-	KICH

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID

lncRNA ENST ID

length(AA)

start at transcript

end at transcript

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential