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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000260018

Summary for MBTPS1-DT

check button Gene summary

Gene informationEnsembl ID

ENSG00000260018

Gene symbol

MBTPS1-DT

Gene nameMBTPS1 divergent transcript
HGNC

55401

Entrez ID
Gene typeantisense
SynonymsMBTPS1-DT|16q24.1|RP11-505K9.1
UniProtAcc

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Structure and expression level for MBTPS1-DT

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002600183.889402e+01-1.689044e+003.311345e-01-5.100778e+003.380000e-072.430000e-06DOWNCHOL
ENSG000002600186.487445e+011.393351e+002.888688e-014.823474e+001.410000e-061.210000e-05UPBLCA
ENSG000002600185.961454e+011.060964e+002.085770e-015.086680e+003.640000e-071.620000e-06UPUCEC
ENSG000002600189.439037e+011.011055e+001.660884e-016.087452e+001.150000e-097.540000e-09UPPRAD
ENSG000002600185.473199e+011.031242e+001.351032e-017.632999e+002.290000e-141.120000e-13UPBRCA

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG00000260018-3.955009e-011.250310e-04KICH2.065061e-04

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lncRNA-Protein interaction for MBTPS1-DT

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000260018ENST00000565382RP11-505K9.1ENSG00000130254SAFB266.2591.5532Q14151TF,RBPNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000260018ENST00000565382RP11-505K9.1ENSG00000130254SAFB266.2590.3303Q14151TF,RBPNA

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lncRNA-DNA interaction for MBTPS1-DT

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for MBTPS1-DT

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
CNOT4,SPICE1,NEK4,FNIP1,KLHL42,SAV1,AP5M1,ARID1A,MSI2,MARCHF6,RNF123,TBC1D5,RFX7,ATM,MAP4K3,BECN1,RDX,TAF4,SMARCC2,QSER1,PPP1R12A,GNL3L,POLR1B,SNW1,TPM3,TMEM161B,ACVR1B,KIAA1109,STAU2,STRN3,RIOK3,TBC1D15,KAT6B,EDEM1,EIF4G1,FRG1BP,C11orf58,NEDD1,FCHO2,CREBBP,CLDND1,LGALS8,PBRM1,SRRM2,TRAK1,ANKRD28,HEATR6,PSMC1,VPS13B,SRP72,SACM1L,MAN1A2,GMPS,TRIM5,MRPL19,TDG,ATP11B,PRRC2C,SNX19,PDPK1,PHF3,ARFIP1,WWP1,CEP120,PAK2,ZEB2,CASP8,CPEB4,TMEM127,ARID1B,STRN,MAFG,SLFN5,EPS8,GOLIM4,TMEM33,PTPRE,PHF20,KIDINS220,CYLD,CDC27,REPS1,GTF2H3,TMCO3,MAT2A,RNF31,BTBD10,FBXO11,DDX6,BRD3,LPGAT1,SEC23A,CEP192,JKAMP,MINK1,CNOT7,MKLN1,MFSD9,ITSN2,PSD3,MTMR12,RAB35,RB1CC1,KLF13,SMAD1,KIF21A,WIPF2,TM9SF1,MYCBP2,AGFG1,LPCAT3,SPPL2A,UBE4B,MED12,TP53BP2,NDST1,VPS35,YAP1,POC1B,SAMD8,GTF3C3,FOXN3,MARCHF7,OSBPL8,CNOT2,NCOA4,KAT7,MTRR,TMEM123,UBAP2L,AZI2,DCP1A,ACTR2,DCAF7,VAMP7,GPATCH8,RBM7,CNOT8,ALMS1,ABL2,FASTKD2,SEC23B,KBTBD2,TUT7,MED1,NUP58,HBP1,EIF4G2,PPFIBP1,IPO9,CD46,CDC23,NIN,CUL2,GON4L,CAB39,HUWE1,PRKAR1A,MIS18BP1,TEP1,MBOAT1,FARP1,BCL2L11,NSRP1,DCAF5,FBXO3,TLK1,CPD,RABEP1,FAM13B,MED23,ARFGEF1,DHX35,NOTCH2,SUCO,ATF1,ARHGAP32,TAF1A,FYCO1,SPOPL,POLG,NOMO2,CUL3,TBC1D14,LRP6,PARP1,RBMS2,TMEM87B,FAM168B,FAM53C,USP4,SINHCAF,XPO7,VPS4B,SUSD6,NEPRO,PMM2,POGLUT3,NAF1,PIBF1,FRS2,FCHSD2,DUSP3,KHNYN,TOM1L1,SCP2,RELL1,FOXJ3,EDC4,LARP1,UBXN7,EHBP1,SP2,NPEPPS,RNF214,BZW1,DCTN4,ZFAND1,TUT4,SLAIN2,PKN2,GTF2H1,SASH1,PUM1,FNDC3A,KANSL1L,MAN2A2,TJP2,SEC24B,FOXN2,SFT2D2,KCTD10,FAM91A1,KMT2D,CTNNB1,FUBP1,PKD2,EXOC7,MON2,USP33,FBXO21,MAPK14,RNF111,TP53BP1,VPS37A,TUBGCP4,PRRC2A,IGF1R,PPIP5K2,IFNAR2,ZDHHC5,USP32,SNX30,G3BP1,GIGYF2,USP34,TFCP2,WBP11,RIOK2,POLR1A,PRMT5,CCNI,SLC7A1,TWF1,BRD2,DDX3X,IPO5,NIPBL,ASXL2,LSM14A,PHF8,USP47,POLR2B,ESF1,BAZ2A,IMPA1,CEP350,RGP1,PIKFYVE,HIPK2,RAB3GAP2,MYOF,THUMPD1,HSPG2,SLC35A5,MAP3K3,RAB18,SLC10A7,DENND4A,LIG3,BPNT2,MED13,RAP1B,STAT6,KDSR,ARF3,ZNF525,EP400,USP46,SMG6,CEMIP2,SPRING1,KIAA0232,WDR20,SKI,NUP98,KIAA0586,ATP11A,PLBD2,TRIP12,AKAP10,PSMD5,DIAPH1,TM9SF4,GTF2A1,TFIP11,GRPEL2,PRKAA1,GGCX,RNF41,MYO18A,SMAD5,SLC12A6,MORC3,ZEB1,TUBGCP3,STRIP1,GOSR1,ABI2,TTC37,CFLAR,CTNNA1,ELF1,OSBPL1A,BCL10,RPE,TAF2,GCC2,CHD6,CAST,STAG1,TEX2,CAMKK2,PLAA,TRIM33,CPSF6,PIP5K1A,PDCD10,HEATR5A,MED21,FEM1B,TNFRSF10A,THOC2,CELF1,HAUS2,DOCK1,NEMF,CTDSP2,MPRIP,CCNK,RPS6KB1,NCOR1,WSB1,ZFYVE9,EMC1,WSB2,TAF5L,SCAF11,FNBP1L,CNOT1,DIABLO,NF1,CAMSAP2,SLC35E1,RBBP4,LPIN2,ITSN1,UBAP1,MYH9,SLC11A2,USP15,FCF1,SH3PXD2A,YPEL2,SECISBP2L,UBR1,DAG1,ACTR3,SEPTIN10,NOP9,CHD8,TAOK3,TSR1,MED14,MEF2D,KIAA0100,ADAM10,XPC,PRDM2,ARPP19,ARHGAP21,IARS1,UBE4A,VPS26A,KIRREL1,DCUN1D1,MAP3K2,CDV3,ATL2,CAP1,ITPRIPL2,ENTPD4,IPO11,KATNAL1,LASP1,FKTN,WASF2,VGLL4,MACF1,DHX8,SH3GLB1,NBR1,RIC1,NUMB,CUL4B,MARF1,SPRED2,RERE,KTN1,RAPGEF2,C5orf24,AFDN,MFSD6,ATP2C1,ILK,FLT1,ATXN2L,USP28,RRN3,FARP2,SEC24D,TTC17,SNRK,UBE2D3,DYNC1I2,DOCK7,GLS,ZDHHC17,SEPTIN11,IREB2,CLIP1,RFFL,SART3,ARNT,VHL,API5,RAI1,ATF2,NCOA2,PTPRB,RC3H2,UBE3B,SNAP23,BCL2L2,XPO1,STK38L,RNF169,MAPK1,FAM168A,PRKAR2A,TBC1D2B,RAI14,RAB11FIP1,ERN1,MIER3,BRCC3,USP9X,MAST4,ROCK2,NUP54,RHBDD1,C1orf109,UEVLD,KDM5C,MTMR1,DCTN1,TGFBRAP1,RREB1,MYO1E,NONO,SSH1,CHURC1,PPP4R2,SOCS7,TMLHE,KLHL5,TTF2,EPS15,MAP4K4,TIRAP,ZZZ3,FAM76B,GFM2,HYOU1,GALC,RABGAP1,SNX2,LAMP2,ANTXR2,KIF2A,PPIG,EIF3L,REST,EMSY,SOS2,THRAP3,C6orf62,CS,PCYT1A,BACE1,CPNE8,POLK,CCDC91,ACTN4,ELK3,DCAF17,IL6ST,DYRK1A,AFF1,BLOC1S6,ABCE1,MRTFB,DPY19L4,USP8,CBLL1,USPL1,AGO2,FAM114A2,TECPR2,ITFG1,UTP23,ECD,SPG11,SMC6,ATP2B1,INPP4A,GLYR1,DHX36,ZNF91,RALGAPA1,MBTD1,PTPN14,IBTK,FER,BAZ1A,TANK,LMTK2,ATL3,RAB6A,KPNB1,GSK3B,QKI,GTF3C2,VPS26C,AEBP2,RRP1B,CEP170,OXSR1,RNF4,NT5C2,ZMYND11,RALGAPB,CCNG2,HIPK1,RNF40,LIMS1,QTRT2,TACC1,TMEM245,EPB41,NOP14,SPIRE1,NRBF2,PI4KA,PSEN1,NSD3,WDR43,CEP104,INTS6,HBS1L,ZMYM5,PTPN11,SCYL2,MCM3AP,MID2,PLEKHB2,SYNJ2,POLR2A,ANKFY1,BNIP2,DNAJC11,NR2C2,AHCYL2,PHLDB1,CLTC,ATRN,AP1AR,SLC25A36,ATP2A2,ALG12,SON,LZIC,PIK3C3,ANKRD50,BIRC2,INTS2,PTPRG,RAB31,HSPA8,M6PR,PTPN12,SNX29,ABCB7,APAF1,CDYL,BBX,TAF1,BTBD7,PCNX1,DMXL2,EIF2A,CRTC3,VIRMA,CDC42SE2,DDI2,ZNF720,IQGAP1,SMARCA2,PLEKHA5,SLMAP,CLCN3,SESTD1,CIPC,GSTCD,KLF7,STRAP,EML1,STK24,RFX5,ARHGAP5,CLCC1,MDN1,SKIL,CSNK2A1,IKBKG,KDM1B,COPB2,FAN1,SEC14L1,SETD5,SF3B1,PWWP2A,C2CD5,ARSB,SCARB2,PDLIM5,KIF13B,VEZT,DYNC1LI2,KBTBD4,TNKS,MIDEAS,ZNF106,RASA1,APP,NAMPT,CERT1,PTPN9,PUM2,PLS3,ARMC8,PHC3,SEPTIN2,BTBD1,COG6,SIK3,LIN54,ABHD5,IGF2R,TAF1B,DOCK9,NCOA3,SYNJ1,TBC1D23,ITGA6,SBF2,ATP9B,PDCL,ECPAS,ERC1,TNPO1,RHOT1,SNX4,PGM3,NEK7,SPTLC1,FAM160B1,RO60,NCAPD3,MAPK9,CSNK1G3,HEATR5B,BIRC6,SEC31A,CALCOCO1,ZNF28,SWT1,DENND5A,BCOR,BDP1,SMURF1,SYNRG,SRRD,SLC30A7,MIA3,ABHD18,AFAP1,AHNAK,MCFD2,NDUFS1,NSD1,SLC39A6,MPHOSPH9
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000260018ENST00000565382exon_skip_29583chr1:114780109-114780215-10.12-0.1022SIKE1ENST00000060969Frame-shift
ENSG00000260018ENST00000565382exon_skip_324294chr2:27774423-27774530-14.04-0.1733MRPL33ENST00000296102Frame-shift
ENSG00000260018ENST00000565382exon_skip_466137chr7:48103296-48103411-14.52-0.3924UPP1ENST00000331803,ENST00000395564Frame-shift
ENSG00000260018ENST00000565382exon_skip_445390chr5:150403120-150403312-28.53-0.1526CD74ENST00000009530In-frame
ENSG00000260018ENST00000565382exon_skip_326741chr2:73946718-73946906-19.41-0.1142DGUOKENST00000264093Frame-shift
ENSG00000260018ENST00000565382exon_skip_358606chr20:63202286-63203807-59.06-0.1147YTHDF1ENST00000370339In-frame
ENSG00000260018ENST00000565382exon_skip_96024chr12:109090008-109090207-22.24-0.1454ALKBH2ENST00000343075,ENST00000429722Frame-shift
ENSG00000260018ENST00000565382exon_skip_319223chr19:43526200-43526349-19.54-0.1615ETHE1ENST00000292147Frame-shift
ENSG00000260018ENST00000565382exon_skip_494079chr8:144099080-144099205-22.40-0.2240SHARPINENST00000398712Frame-shift
ENSG00000260018ENST00000565382exon_skip_371367chr3:9697710-9697866-19.97-0.1406MTMR14ENST00000296003In-frame
ENSG00000260018ENST00000565382exon_skip_5861chr1:45607320-45608337-40.16-0.1009NASPENST00000350030In-frame

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for MBTPS1-DT

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000260018ENST00000565382PPP1R12AENSG00000058272ENST00000550299-0.1766176-BLCA,UCEC
ENSG00000260018ENST00000565382PPP1R12AENSG00000058272ENST00000546369-0.5400465-BLCA,UCEC
ENSG00000260018ENST00000565382SPIRE1ENSG00000134278ENST00000309836-0.176687CHOL-
ENSG00000260018ENST00000565382SPIRE1ENSG00000134278ENST00000453447-0.144992CHOL-
ENSG00000260018ENST00000565382KIAA0100ENSG00000007202ENST00000544884-0.17371CHOL-
ENSG00000260018ENST00000565382KIAA0100ENSG00000007202ENST00000389003-0.17371CHOL-
ENSG00000260018ENST00000565382MAP4K3ENSG00000011566ENST00000414968-0.1131150CHOL-
ENSG00000260018ENST00000565382MAP4K3ENSG00000011566ENST00000429397-0.1293167CHOL-
ENSG00000260018ENST00000565382MAP4K3ENSG00000011566ENST00000437968-0.1476265CHOL-
ENSG00000260018ENST00000565382MAP4K3ENSG00000011566ENST00000484274-0.4127228CHOL-
ENSG00000260018ENST00000565382PHLDB1ENSG00000019144ENST00000530994-0.10921CHOLBRCA
ENSG00000260018ENST00000565382PHLDB1ENSG00000019144ENST00000528594-0.10921CHOLBRCA
ENSG00000260018ENST00000565382CSENSG00000062485ENST00000549143-0.11291CHOL-
ENSG00000260018ENST00000565382CSENSG00000062485ENST00000548746-0.108687CHOL-
ENSG00000260018ENST00000565382CSENSG00000062485ENST00000542324-0.11351CHOL-
ENSG00000260018ENST00000565382CSENSG00000062485ENST00000546891-0.10541CHOL-
ENSG00000260018ENST00000565382CSENSG00000062485ENST00000548849-0.10681CHOL-
ENSG00000260018ENST00000565382CSENSG00000062485ENST00000552222-0.1167232CHOL-
ENSG00000260018ENST00000565382TP53BP1ENSG00000067369ENST00000434561-0.1583191CHOL-
ENSG00000260018ENST00000565382TP53BP1ENSG00000067369ENST00000417342-0.10801CHOL-
ENSG00000260018ENST00000565382TP53BP1ENSG00000067369ENST00000467474-0.1247234CHOL-
ENSG00000260018ENST00000565382ATP11AENSG00000068650ENST00000415301-0.1173128CHOL-
ENSG00000260018ENST00000565382KIF2AENSG00000068796ENST00000401507-0.1634243CHOL-
ENSG00000260018ENST00000565382KIF2AENSG00000068796ENST00000407818-0.1515171CHOL-
ENSG00000260018ENST00000565382KIF2AENSG00000068796ENST00000506857-0.1037335CHOL-
ENSG00000260018ENST00000565382DYNC1I2ENSG00000077380ENST00000445378-0.111994CHOL-
ENSG00000260018ENST00000565382KLHL42ENSG00000087448ENST00000543254-0.109297CHOLBLCA
ENSG00000260018ENST00000565382ITGA6ENSG00000091409ENST00000416789-1.1386359CHOL-
ENSG00000260018ENST00000565382SUCOENSG00000094975ENST00000610051-0.423365CHOL-
ENSG00000260018ENST00000565382SUSD6ENSG00000100647ENST00000342745-0.10591CHOL-
ENSG00000260018ENST00000565382RAI1ENSG00000108557ENST00000353383-0.13251CHOL-
ENSG00000260018ENST00000565382RAI1ENSG00000108557ENST00000583166-0.2278209CHOL-
ENSG00000260018ENST00000565382SPRING1ENSG00000111412ENST00000547630-0.10781CHOL-
ENSG00000260018ENST00000565382SLC25A36ENSG00000114120ENST00000453248-0.5623191CHOL-
ENSG00000260018ENST00000565382PLEKHB2ENSG00000115762ENST00000404460-0.1520288CHOL-
ENSG00000260018ENST00000565382GON4LENSG00000116580ENST00000271883-0.11741CHOL-
ENSG00000260018ENST00000565382CAMSAP2ENSG00000118200ENST00000413307-0.1423384CHOL-
ENSG00000260018ENST00000565382MIS18BP1ENSG00000129534ENST00000453142-0.1026306CHOL-
ENSG00000260018ENST00000565382PTPREENSG00000132334ENST00000471218-2.55501CHOL-
ENSG00000260018ENST00000565382PTPREENSG00000132334ENST00000467366-2.55501CHOL-
ENSG00000260018ENST00000565382PTPREENSG00000132334ENST00000479896-0.103522CHOL-
ENSG00000260018ENST00000565382YAP1ENSG00000137693ENST00000531439-0.6490110-UCEC,BRCA
ENSG00000260018ENST00000565382ADAM10ENSG00000137845ENST00000461408-0.1111203CHOL-
ENSG00000260018ENST00000565382MYOFENSG00000138119ENST00000371489-0.1710470CHOLPRAD
ENSG00000260018ENST00000565382MYOFENSG00000138119ENST00000371488-0.103852CHOLPRAD
ENSG00000260018ENST00000565382ABI2ENSG00000138443ENST00000430418-0.1147128CHOL-
ENSG00000260018ENST00000565382ABI2ENSG00000138443ENST00000454023-0.3091414CHOL-
ENSG00000260018ENST00000565382GSTCDENSG00000138780ENST00000360505-0.1042136CHOL-
ENSG00000260018ENST00000565382SINHCAFENSG00000139146ENST00000542983-0.2345312CHOL-
ENSG00000260018ENST00000565382SLC7A1ENSG00000139514ENST00000380752-0.10921CHOL-
ENSG00000260018ENST00000565382FERENSG00000151422ENST00000438717-0.22531CHOLBLCA,UCEC
ENSG00000260018ENST00000565382IGF1RENSG00000140443ENST00000268035-0.10691CHOL-
ENSG00000260018ENST00000565382IGF1RENSG00000140443ENST00000558762-0.10691CHOL-
ENSG00000260018ENST00000565382IGF1RENSG00000140443ENST00000560144-0.13321CHOL-
ENSG00000260018ENST00000565382IQGAP1ENSG00000140575ENST00000560373-0.3708241CHOL-
ENSG00000260018ENST00000565382MINK1ENSG00000141503ENST00000574453-0.11251CHOL-
ENSG00000260018ENST00000565382MINK1ENSG00000141503ENST00000571207-0.10851CHOL-
ENSG00000260018ENST00000565382MINK1ENSG00000141503ENST00000576037-0.129558CHOL-
ENSG00000260018ENST00000565382HSPG2ENSG00000142798ENST00000374695-0.10621CHOLBLCA
ENSG00000260018ENST00000565382HSPG2ENSG00000142798ENST00000374676-0.23501CHOLBLCA
ENSG00000260018ENST00000565382HSPG2ENSG00000142798ENST00000412328-0.1920347CHOLBLCA
ENSG00000260018ENST00000565382HSPG2ENSG00000142798ENST00000439717-0.165295CHOLBLCA
ENSG00000260018ENST00000565382ABL2ENSG00000143322ENST00000512653-0.1355410CHOL-
ENSG00000260018ENST00000565382ABL2ENSG00000143322ENST00000392043-0.103857CHOL-
ENSG00000260018ENST00000565382TAF1AENSG00000143498ENST00000366890-0.134432CHOL-
ENSG00000260018ENST00000565382TAF1AENSG00000143498ENST00000350027-0.134432CHOL-
ENSG00000260018ENST00000565382TPM3ENSG00000143549ENST00000302206-0.33211CHOL-
ENSG00000260018ENST00000565382TPM3ENSG00000143549ENST00000368531-0.10291CHOL-
ENSG00000260018ENST00000565382TPM3ENSG00000143549ENST00000323144-0.10291CHOL-
ENSG00000260018ENST00000565382UBAP2LENSG00000143569ENST00000428595-0.10121CHOL-
ENSG00000260018ENST00000565382CEP170ENSG00000143702ENST00000490813-0.1900283CHOL-
ENSG00000260018ENST00000565382CEP170ENSG00000143702ENST00000522895-0.1260116CHOL-
ENSG00000260018ENST00000565382KANSL1LENSG00000144445ENST00000457374-1.2200462CHOL-
ENSG00000260018ENST00000565382KANSL1LENSG00000144445ENST00000452086-1.2200462CHOL-
ENSG00000260018ENST00000565382KANSL1LENSG00000144445ENST00000415553-0.6038481CHOL-
ENSG00000260018ENST00000565382VGLL4ENSG00000144560ENST00000451674-0.1448148CHOL-
ENSG00000260018ENST00000565382VGLL4ENSG00000144560ENST00000424529-0.14525CHOL-
ENSG00000260018ENST00000565382VGLL4ENSG00000144560ENST00000426568-0.1487393CHOL-
ENSG00000260018ENST00000565382VGLL4ENSG00000144560ENST00000430365-0.1487393CHOL-
ENSG00000260018ENST00000565382TACC1ENSG00000147526ENST00000518415-0.126761CHOLBLCA,UCEC,PRAD,BRCA
ENSG00000260018ENST00000565382TACC1ENSG00000147526ENST00000521866-0.112551CHOLBLCA,UCEC,PRAD,BRCA
ENSG00000260018ENST00000565382TMCO3ENSG00000150403ENST00000473287-1.0133377CHOL-
ENSG00000260018ENST00000565382TMCO3ENSG00000150403ENST00000619336-0.19551CHOL-
ENSG00000260018ENST00000565382PTPN14ENSG00000152104ENST00000543945-0.10111CHOLBRCA
ENSG00000260018ENST00000565382MSI2ENSG00000153944ENST00000416426-0.12531CHOL-
ENSG00000260018ENST00000565382MSI2ENSG00000153944ENST00000442934-0.12531CHOL-
ENSG00000260018ENST00000565382RAB11FIP1ENSG00000156675ENST00000522727-0.1538116CHOL-
ENSG00000260018ENST00000565382NSD1ENSG00000165671ENST00000347982-0.1223129CHOL-
ENSG00000260018ENST00000565382RAB31ENSG00000168461ENST00000581109-0.1448171CHOLUCEC
ENSG00000260018ENST00000565382MBOAT1ENSG00000172197ENST00000324607-0.140618CHOL-
ENSG00000260018ENST00000565382KIRREL1ENSG00000183853ENST00000359209-0.1019100CHOLBRCA
ENSG00000260018ENST00000565382SEPTIN10ENSG00000186522ENST00000415095-0.1135235-BLCA,UCEC
ENSG00000260018ENST00000565382AFAP1ENSG00000196526ENST00000382543-0.1773338CHOLBLCA
ENSG00000260018ENST00000565382AFAP1ENSG00000196526ENST00000614385-0.1885365CHOLBLCA
ENSG00000260018ENST00000565382SOCS7ENSG00000274211ENST00000613678-0.1380134CHOL-
ENSG00000260018ENST00000565382SEC23AENSG00000100934ENST00000548032-0.113255-BLCA,UCEC,PRAD
ENSG00000260018ENST00000565382SEC23AENSG00000100934ENST00000557280-0.1892441-BLCA,UCEC,PRAD
ENSG00000260018ENST00000565382SEC23AENSG00000100934ENST00000553970-0.1892441-BLCA,UCEC,PRAD

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000260018.1ENST00000565382.18217265