 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | CUL4B,ARHGEF9,CEBPZ,DNMT1,FAM172A,SNX19,USP34,ESCO1,AFG3L2,CEP63,MED14,USP22,BRAP,TAF9B,TADA1,CAND1,INTS14,SMG7,BRD7,NUP155,POLR1B,TGFBRAP1,FASTKD3,ROCK1,SCFD2,EXOC5,PYGO2,MIB1,GXYLT1,CHM,SMARCAL1,PDS5A,RELCH,AZI2,NEK4,TMEM184C,MAZ,RBBP8,GSK3B,YWHAQ,HLTF,DCK,RTL6,USP39,TTI1,SENP1,ATRX,ZNF24,DHFR,RPRD1A,ATP5F1A,HSDL1,TUB,BRI3BP,BRCC3,CRY1,HEATR1,ZBED4,WDCP,SUV39H2,BCL7A,GTF3C3,PIGX,COG8,PBRM1,TTC30B,ZC4H2,PTPN11,SLC25A40,CKAP2,PDPK1,GMFB,PHKB,PRR14L,KIF4A,DNAJC21,EXD2,OBI1,TMSB15A,TIMELESS,LZTFL1,MAML3,TRNT1,MTMR12,PIGM,STRBP,DCAF16,USP11,DHX57,USP30,UBE2N,MRPS30,STAU2,RNF40,XXYLT1,AP5M1,CDC25A,MEX3C,GFOD2,GPRASP2,ATXN10,STK39,SUPT16H,AP1AR,NREP,USP7,RBMX,CNOT1,SMAD2,OSBPL1A,HSPA13,RAI1,ATP7A,BCLAF3,C5orf22,ADNP,MYEF2,TUBGCP5,NCOA5,ORC4,TMEM241,SLC39A9,BBS10,NF1,ARNT2,NUP210,SMARCC1,TOP2B,MOCS3,ARL5A,PRDM4,TTC30A,CDK4,NOMO2,KIAA0586,RTF1,AGBL5,GABPB1,HDHD2,SBK1,DYNC1LI1,ATP8A1,VPS36,DCAF17,C12orf66,KLHL12,AQR,MCM6,FMR1,MSH6,PABIR2,PEX26,SLC38A1,NCOA6,TTC21B,CEP290,HERC2,FANCF,DZIP3,TDG,MCM8,SRBD1,CIAO1,TUBGCP4,TRAPPC8,MBLAC2,ZADH2,EID1,GMCL1,ZFP62,ZNF48,RACGAP1,UBFD1,CASK,PAIP1,RAD51C,NARS1,CPSF2,NUBPL,SYNRG,TOPBP1,EPG5,C18orf21,CNNM3,BHLHB9,PIGN,NSD2,CENPO,MYO5A,VEZT,TPGS2,FBXO11,GUF1,ATP6V1E2,DLAT,DSG2,VPS4B,SAP130,NSUN2,MTMR2,ZNF720,HDAC2,TMPO,SMC1A,ZW10,ABHD3,SS18,UBXN2A,ZMYM3,CSNK2A1,LDAH,DNMT3A,RMND5A,SCAF11,POLR1A,SNRNP200,TEX10,VWA8,RUSF1,NOL4L,ZNRF1,YPEL1,CPSF3,SCRN3,PIKFYVE,CHML,PPP2R5E,PUM2,DYM,ATP6V0A2,AASDHPPT,CLCN3,ACP1,ZNF43,CBX5,TYMS,TRMT61B,SRCAP,EPM2AIP1,SLC30A9,KLHL23,ARHGAP5,WDR35,DENR,TMEM131,ACACA,TRA2B,B4GALT6,PIAS2,MRPS14,HPS4,ADAT1,SELENOI,NAE1,MARCHF6,TAB3,APPL1,ITFG1,ASB8,CCNF,TDRKH,CUL3,HCFC1,NOL8,SEC22C | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | LMNA,EMP3,NFKB2,IRF3,TRIP10 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000259985 | ENSG00000075303 | SLC25A40 | ACC,KICH,READ,SKCM,UVM | KICH | | | ENSG00000259985 | ENSG00000100099 | HPS4 | ACC,KICH,LAML,THYM,UVM | KICH | | | ENSG00000259985 | ENSG00000118276 | B4GALT6 | ACC,COAD,GBM,KICH,LAML,LGG,LUSC,OV,PCPG,READ,SKCM,TGCT,THYM,UCS | KICH,LUSC | | | ENSG00000259985 | ENSG00000141385 | AFG3L2 | ACC,KICH,PCPG,PRAD,READ | KICH | | | ENSG00000259985 | ENSG00000141447 | OSBPL1A | ACC,KICH,LUSC,PRAD,SKCM,TGCT,UCS,UVM | KICH | | | ENSG00000259985 | ENSG00000174206 | C12orf66 | ACC,KICH,LAML,LUSC,PCPG,PRAD,UCS,UVM | LUSC | | | ENSG00000259985 | ENSG00000187555 | USP7 | ACC,KICH,LGG,PCPG,PRAD,THYM | KICH | | | ENSG00000259985 | ENSG00000196782 | MAML3 | ACC,KICH,PRAD,SKCM,TGCT,UVM | KICH | | | ENSG00000259985 | ENSG00000250565 | ATP6V1E2 | ACC,KICH,LGG,LUSC,PCPG,PRAD,UCS | LUSC | | | ENSG00000259985 | ENSG00000109685 | NSD2 | GBM,KICH,LGG,LUSC,PCPG,TGCT,THYM,UCS | LUSC | | | ENSG00000259985 | ENSG00000110987 | BCL7A | GBM,LGG,LUSC,PCPG,THYM | LUSC | | | ENSG00000259985 | ENSG00000111371 | SLC38A1 | GBM,KICH,LAML,PCPG,THYM | KICH | | | ENSG00000259985 | ENSG00000138092 | CENPO | GBM,LGG,LUSC,OV,PCPG,PRAD,TGCT,THYM | LUSC | | | ENSG00000259985 | ENSG00000162063 | CCNF | GBM,LGG,LUSC,OV,PCPG,THYM | LUSC | | | ENSG00000259985 | ENSG00000163257 | DCAF16 | GBM,KICH,LAML,LUSC,PRAD,UCS | KICH | | | ENSG00000259985 | ENSG00000164045 | CDC25A | GBM,LGG,LUSC,THYM,UCS | LUSC | | | ENSG00000259985 | ENSG00000197535 | MYO5A | GBM,KICH,LGG,PCPG,PRAD,UVM | KICH | | | ENSG00000259985 | ENSG00000046604 | DSG2 | KICH,LUSC,OV,PRAD,READ,TGCT,UVM | KICH,LUSC | | | ENSG00000259985 | ENSG00000101773 | RBBP8 | KICH,LUSC,PCPG,READ,THYM | LUSC | | | ENSG00000259985 | ENSG00000111602 | TIMELESS | KICH,LGG,LUSC,PCPG,THYM,UCS | LUSC | | | ENSG00000259985 | ENSG00000124406 | ATP8A1 | KICH,LAML,PCPG,PRAD,UVM | KICH | | | ENSG00000259985 | ENSG00000158201 | ABHD3 | KICH,PCPG,PRAD,READ,THYM | KICH | | | ENSG00000259985 | ENSG00000161800 | RACGAP1 | KICH,LGG,LUSC,PCPG,THYM | KICH,LUSC | | | ENSG00000259985 | ENSG00000165209 | STRBP | KICH,LAML,LGG,THYM,UVM | KICH | | | ENSG00000259985 | ENSG00000165240 | ATP7A | KICH,LAML,PCPG,PRAD,UVM | KICH | | | ENSG00000259985 | ENSG00000184992 | BRI3BP | KICH,LGG,LUSC,PCPG,PRAD | LUSC | | | ENSG00000259985 | ENSG00000198648 | STK39 | KICH,OV,PCPG,PRAD,READ,THYM | KICH | | | ENSG00000259985 | ENSG00000116062 | MSH6 | LAML,LGG,LUSC,PRAD,THYM,UCS | LUSC | | | ENSG00000259985 | ENSG00000119772 | DNMT3A | LAML,LUSC,OV,TGCT,THYM | LUSC | | | ENSG00000259985 | ENSG00000139726 | DENR | LAML,LGG,LUSC,PCPG,PRAD,UCS,UVM | LUSC | | | ENSG00000259985 | ENSG00000163026 | WDCP | LAML,LGG,LUSC,OV,THYM | LUSC | | | ENSG00000259985 | ENSG00000076003 | MCM6 | LGG,LUSC,PCPG,TGCT,THYM | LUSC | | | ENSG00000259985 | ENSG00000120802 | TMPO | LGG,LUSC,OV,PCPG,THYM,UVM | LUSC | | | ENSG00000259985 | ENSG00000125885 | MCM8 | LGG,LUSC,PCPG,TGCT,THYM | LUSC | | | ENSG00000259985 | ENSG00000173950 | XXYLT1 | LGG,LUSC,OV,TGCT,UCS | LUSC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000259985 | ENST00000565978 | TRIP10 | ENSG00000125733 | ENST00000596758 | -0.1419 | 1 | - | KICH | | ENSG00000259985 | ENST00000565978 | LMNA | ENSG00000160789 | ENST00000368301 | -0.1808 | 220 | - | KICH | | ENSG00000259985 | ENST00000565978 | LMNA | ENSG00000160789 | ENST00000368299 | -0.1822 | 1 | - | KICH | | ENSG00000259985 | ENST00000565978 | LMNA | ENSG00000160789 | ENST00000448611 | -0.1920 | 209 | - | KICH | | ENSG00000259985 | ENST00000565978 | LMNA | ENSG00000160789 | ENST00000368297 | -0.1808 | 220 | - | KICH | | ENSG00000259985 | ENST00000565978 | LMNA | ENSG00000160789 | ENST00000473598 | -0.1822 | 1 | - | KICH | | ENSG00000259985 | ENST00000565978 | LMNA | ENSG00000160789 | ENST00000508500 | -0.3278 | 508 | - | KICH |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000259985.1 | ENST00000565978.1 | 46 | 52 | 192 |
|
