 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ARHGEF17,RPAP2,FERMT2,PMM2,FASN,MTMR6,BICD2,AMER1,MFSD8,ATL2,WDFY1,MAST3,FRRS1,ELOVL5,LIG3,LIFR,MZF1,TTC31,MAPK8IP3,VAMP4,SLF2,GNAQ,TMEM184C,HLTF,PIGG,SENP1,GPATCH11,RNF6,TOB2,HMGCS1,SLC19A2,BCL7A,TFIP11,RETSAT,TULP3,WDR5B,ST7L,MSANTD2,GCLM,COG6,LYRM2,TRIM5,C9orf85,FAM133B,IBTK,TBK1,TTC14,BRPF1,CCNK,RAB10,SH3GLB1,AFAP1,PPP1R3E,PPIP5K2,MAP3K5,SPTY2D1,XPO7,TM6SF1,C20orf194,ZFP1,ZIK1,NCBP1,PPIL4,FAM219B,RGP1,TRIM68,AP3M2,SMC2,GRB10,PSIP1,RIC8B,UBE3A,TMEM30A,MORC2,THOC2,MFSD1,ZBTB6,EDEM1,OTULIN,GTF3C2,ERG,ATP9A,PEAK1,BCL10,SEPTIN10,SOX5,FRK,ARHGAP11A,PABPC4L,UBE2H,MSH6,HELLS,PURA,CD164,XPNPEP3,MIS12,ZNHIT6,HERPUD2,CTDSP2,SEC63,NEMP1,EML4,MIS18BP1,HEG1,MDN1,PTPRB,BANK1,PAIP1,FAM53C,RAB5A,RNF24,SEC23A,SRPK1,FKBP15,LPCAT3,SECISBP2L,ORC2,SSBP2,NFKBIZ,VGLL4,PHC3,GPR155,ETFDH,AIDA,ZZEF1,DHX35,INTS2,VPS26C,SUPT20H,UBXN2A,SLU7,PRELID3B,ERGIC2,FAM83B,RIOK1,SMARCAD1,GIGYF1,STX6,KHNYN,ZNF14,MBTPS1,SSX2IP,CDK17,IPO9,ATG2B,NIPAL3,HUWE1,ECD,AP4E1,TNPO2,DDX42,WDR35,TIFA,EIF4A1,MKRN2,STAG3,SEC24C,ACACA,CRYBG3,NEDD9,AKAP1,DNAJC24,PGGT1B,RALBP1,MECOM,RCHY1,SELENOI,PITPNM2,SWT1,BRD3,TMEM64,ARHGEF9,AMMECR1L,TMEM168,IPO8,FANCL,STK17B,NCOA4,GNE,BRAP,CDC42SE1,KLF7,CPT1A,WBP4,UBE2G2,PAWR,MIB1,CEP68,DNMBP,OSMR,NEMP2,PLEKHG2,KLHL15,VEZF1,MLLT6,EPB41L4A,PRPF40A,ELAPOR2,GSK3B,ROBO1,ATG2A,ZNF70,FASTKD1,INO80D,ICE2,MYO10,AGK,SMCR8,CRLF3,DDX24,TCAIM,KPNA1,TESK2,STK3,MAPK9,CIP2A,AP1G2,DNAJB4,ZXDA,DNAJC21,PARD3,ZDHHC7,RIOX2,SCO1,ZNF25,TRNT1,PPP2CB,ELP3,MYORG,CHD8,EPN2,KIAA1143,DENND6A,RALGPS2,UBR4,TMED8,IFT74,NBEAL2,RELL1,OSBPL8,CBLB,XPO4,AP1AR,UFL1,OCRL,PKD1,RIMKLB,TAF8,NUDT12,SLC25A46,PPM1L,SEMA4D,FZD3,DCTN1,UTP14C,ARNT2,BBS2,RFWD3,TBC1D9,CEP83,DDX20,NCOR2,LIN54,DOCK6,BMP2K,LRIG2,FBXO8,SEC23IP,PATZ1,ABCB7,SNAP23,OSBP,HIP1,IKBKB,DTWD2,SLC38A1,BPNT2,DGKE,SRBD1,ANKRD49,CYB561D1,PAXBP1,CCDC125,TMOD2,C6orf120,KCTD18,PLEKHA8,RNF20,CPNE8,EYA3,ERO1B,RNF31,GOLGA4,FLCN,ATG14,GOLGB1,FOXP1,PWWP2A,DNAJC18,MYNN,RPE,ANKLE2,SLC39A10,TMCO3,LINS1,SNX5,IBA57,LDAH,ANKEF1,SCAF11,CCDC25,ADAM9,PUS10,TMEM167A,CNOT7,DAB2,CCNG1,TOR1AIP2,ZNF862,PDS5B,SBF1,FAM171A1,EDEM3,ALAD,ATP6V0A2,SEC24A,DCTN4,SNX6,UEVLD,KIF3A,TYW1,SCAMP1,TIMM23B,ANKMY2,CSTF2,EXOC7,MTRF1L,KHDC4,NCK1,SNAP29,MIDEAS,PPP1R26,EPB41L2,TPCN1,ABLIM1,UNC119B,PIK3CA,LMLN,ATAD2B,DUSP18,NISCH,SAR1B,ALG11,MYO1B,PREPL,PI4KA,ESCO1,MTMR10,PBX2,FGD6,KLF12,CCDC85C,ANGEL2,NIPAL2,NAA15,RIT1,MYSM1,ITPRID2,METTL15,UIMC1,DTD2,ELF1,C12orf29,UVRAG,RNF44,RBBP8,TNS1,TAF1D,CEP95,TMTC1,TTI1,DHFR,DDX52,SLC11A2,USP4,TASP1,IFT88,CRY1,MEF2C,SUGT1,GTF3C3,AFTPH,ZMAT3,DHFR2,XPC,EFCAB7,PRR14L,FAM160A1,FYTTD1,TOM1L2,BARD1,ERLIN2,RPS6KB1,PTK2,GABBR1,N6AMT1,KANSL3,ITGA1,CDON,RGL1,SH2B3,DENND4A,INIP,CCDC32,DDX60,STAT3,MPHOSPH9,POM121C,HECTD1,TGFBR3,INTS7,SP100,EDC4,TMEM209,AGO2,ARL13B,RBM26,XRCC2,TCFL5,SVIL,CAMK2G,PURB,SPATA6,CCNH,TBC1D16,SYNE1,MLH3,KANSL1L,KIF21A,ANKRD46,WDFY3,ATP8A1,ENTPD4,SMC5,GNA12,HEATR5B,ZNF106,BRCA2,CHD4,VPS53,SNW1,GOSR2,LCOR,PABIR2,FBXL20,CENPC,NOL9,HERC2,TDG,WBP11,ABHD13,TUBGCP4,RUBCN,PARN,PRRC2A,MEGF8,C2orf49,POLK,PLEKHA3,WIZ,DCAF12,PRKAA1,ZSWIM4,MAPK6,WRN,PRDM2,SPATA5,R3HDM2,LCA5,VEZT,BAZ1B,USP12,TMEM87A,METTL6,AAK1,DSG2,TIA1,MOSMO,BAG4,ENOX2,FCF1,SP110,INTS9,SPCS3,SASH1,ZNF8,APP,SUSD1,AMMECR1,BMPR2,SNRNP200,ERCC3,PARP1,POLG,C1orf198,PLSCR4,FAM13B,DYM,GTF3C1,BRCA1,ARFGEF1,MTMR9,SPOPL,RAPGEF5,WDR6,MFHAS1,DSE,BRD8,GNS,ERCC8,TMCC1,UBE2V1,GSPT1,ITGA6,METTL8,USP16,MAPKAPK5,ZMYND8,SLC9A7,XYLT1,IARS1,REEP3,BROX,IP6K1,ENTPD7,TM7SF3,FBXL14,APPL1,SOX6,RBM33,PAG1,NOL8,TMEM237,COL4A5,PRMT5,FPGT,DSTYK,SLC25A27,LEPROT,PLEKHA7,SCFD1,SAMD4B,PDZD8,EXOC5,CAMK2D,CLEC16A,CSDE1,ZNF2,GXYLT1,LNPK,POLR1F,ADGRF5,PLA2G12A,KANK1,PPP1CC,ADCY9,MAP3K2,CSNK1A1,GPATCH2,RPRD1A,RPTOR,TOR1AIP1,LAMA5,KIF21B,CSE1L,NHLRC2,RUFY3,CKAP2,TTC28,ZFYVE26,MS4A7,BECN1,ANKRD42,LARP7,KMT2E,CWC22,C2orf42,DCAF16,ACVR2B,PAQR3,MORC3,ITPR2,PEX1,ENAH,CHORDC1,S100PBP,SLC30A1,KLHL18,AGPAT5,KAT6B,FBXW8,SUPT16H,PDSS2,CHTF8,RNF216,INPP4B,TRIM23,TECPR2,TSC2,DTWD1,SLC25A30,PCNT,N4BP1,YEATS2,USP54,RBM14,RB1,TRAF3,IKZF4,TEFM,TCEANC2,PIP4K2B,NF1,C2orf69,SPIN4,ANKRD50,THAP9,CDC42EP3,THAP6,KIF14,FBXL5,DHX15,YWHAG,NOCT,LSAMP,SEC62,KIF20B,AQR,KLHL12,MTRF1,SENP7,GALNT11,STK24,C8orf88,TAF2,SEC16A,TRIP11,TRPM7,PXK,GTF2E1,MCM8,ACLY,TRAPPC8,KCTD20,ARSK,ERV3-1,MKLN1,WDR41,PHIP,TMED7,DOCK9,CLMN,LRRC58,PPP1R21,CRIM1,RBM18,JAK1,CCDC93,DLAT,LMBR1,MBD6,SNX1,ELL2,PATL1,GANAB,SIPA1L3,TCEA1,UBAP2,RASSF8,ATAD1,HP1BP3,TAPT1,VPS13C,LRATD2,RAB3D,CBR4,ITPR1,WASHC5,USO1,DIDO1,FKTN,ALG9,CEP41,TBC1D22B,CDYL2,PUM2,MARCHF5,DHX36,MKRN1,OXCT1,ZCCHC7,IMPA1,TTLL3,TUBE1,RXRB,YAP1,ARMC1,NEDD1,C2CD2,ARHGEF6,KATNIP,RCBTB2,RNF185,SPG11,WASL,FBXO42,LIMA1,CLIP1,NCAPD3,ITFG1,INTS4,PIP5K1A,MAPK1,FRMD4B,TSPYL4,ELMO2,MGAT4A,FAR2,PUM1,USP22,SLC12A2,NUP155,SPIRE1,RB1CC1,IL6ST,CILK1,ZRANB1,PDE5A,DCP1A,GXYLT2,CITED2,UBQLN4,TANK,DMTF1,ZDHHC23,CCDC47,RFC1,FAM193A,NSD3,OPA3,DCK,MAP4,MAK16,JADE3,PTPRS,MTSS2,HSDL1,SNIP1,SF3B3,ADAMTS5,VPS39,STAT2,PIK3R3,GMFB,WWC2,KAT6A,AFF4,LZTFL1,ARAP2,STRBP,RNF38,LBR,KPNB1,PARG,DEK,ZBED5,HUS1,HBS1L,INPP5B,SETD2,SIN3A,CREB1,MEX3C,SUDS3,ADSS2,DPY19L4,CAPN7,ADAM10,KIF16B,USP49,SMAD2,CLCN6,ADD3,IGIP,SKAP2,VPS35L,CLK2,MYEF2,RNF19A,RAPGEF6,ASH1L,NFIA,PTAR1,NEBL,CEP152,CIT,MGRN1,KATNAL1,CPSF7,ZNFX1,FLI1,TRIM37,PARP4,CTC1,GABPB1,CCDC149,VPS36,INTS6,FBXO38,TBCCD1,IFT172,SYPL1,HCFC2,ADAMTS9,DUSP3,SLC4A1AP,PRKACB,ARSG,RSRC2,AK3,SNX27,GLG1,NAPB,USP46,NAA25,ERMP1,RHPN2,PRMT9,SLC30A4,ARL15,PRKX,TM9SF1,SLC35A3,GTDC1,CEP104,DOCK10,C9orf72,ZBED8,CRK,CHD9,HACD2,RALGAPA2,LMAN1,PNMA2,BACH1,PIGN,HPS5,AUTS2,SBNO1,F2R,POGLUT1,POGLUT3,MLLT3,TYW3,ABHD16A,TOP1,NXF1,RNF111,C6orf62,PAN2,PNMA1,LRTOMT,MKI67,FBXL18,STAG2,PDK1,PKN2,SLC30A6,SNX4,STYX,METTL4,EIF3L,FITM2,DCLRE1A,GRK3,MTMR4,HIPK2,ATXN2L,SDE2,ANKRD13C,TTC3,AHDC1,LAMB2,GOLGA2,TDRP,INSR,STXBP5,ATF7IP,TMEM248,PIP4K2A,BRD4,SHOC2,MEF2D,MOSPD2,RSPH3,ATG4C,CD2AP,GTPBP1,RAB28,HSPG2,FLVCR1,PDCD10,MBOAT1,LUZP1,DENND5A,COPB1,DPY19L3,SMG7,DCLRE1B,LCORL,CSNK1G1,CEP57,HSP90AA1,LRRC8C,ENPP4,GRIP1,METAP1,ARIH2,SPICE1,DIP2C,SAMD9,LNX2,ARMCX4,AZI2,HAUS2,AMD1,RTL6,BZW1,EIF2AK3,KIAA1191,SAMD8,BRCC3,DDX55,SMAP1,EIF4G2,SPART,SHQ1,ATL1,RASSF2,GLMN,WDR59,OTUD7B,UBA6,ACAP2,ASAH1,SWAP70,WSB2,NUMA1,ADD1,SESN3,TNKS2,LANCL1,TMEM8B,ODR4,IFT140,PPP3CB,NDC1,OXR1,AP5M1,NUDT3,OPA1,BCOR,DENND11,LYSMD3,LARGE1,APBB2,FNBP1,MSH3,ASCC1,NEK9,EP400,UACA,NATD1,DDX6,TRMT2B,NOMO2,PGM2,SESTD1,LCMT2,EVC,TMED10,SLX4,SP2,MECP2,NBPF11,ATP6V1C1,UBAP2L,RPRD1B,SEC31A,QRSL1,ACIN1,TNRC18,THAP1,NPC1,TAOK2,USP6NL,MBLAC2,RNLS,GOLT1B,GTF2A1,CEP85,ZNF28,NUBPL,PITPNB,BOD1L1,RAB33B,CHD2,GCLC,MINDY3,PEX13,NBPF15,METTL14,VPS4B,ERN1,OTUD4,AHNAK,RABL3,PRKD1,HERC1,QKI,RASSF3,POLR1A,BCL2L11,TNFRSF10A,TRIM4,ZSWIM8,HERC3,GDAP2,RAD50,TXNDC5,PITPNA,PIGK,SBF2,LPP,LRBA,AP3D1,ELP1,TXNRD3,RRN3,ANP32E,MGAT2,SYNGAP1,XAF1,CHD1,ZHX2,FANCC,FBXO30,HECTD4,YY1AP1,HARS2,GNPTAB,SIX4,HPS4,MCPH1,NBPF1,XPO5,USP45,UBE3B,CARD8,ZSWIM5,SINHCAF,GOPC,EVI5,NCOA2,OSGIN2,LRIF1,VAV2,MED17,DNMT1,HECTD2,BCL6,PLCG1,RCBTB1,PRKAB2,RALGAPA1,LATS2,SNTB1,TMX3,ZBTB4,MDM1,ANK3,MED13L,FCHO2,POLH,FBXO41,ASPM,SMG6,NEK4,OSTM1,CCDC174,SPIN3,TBRG1,RUNX1,ITSN1,SUV39H2,FAT1,PPP1R12A,LRRC8A,POFUT1,RNPC3,IDE,TRPS1,MNT,NTN4,DOP1A,BTBD19,KIAA2026,KMT2C,CCSAP,MRPS30,SEMA4C,STAU2,SCAF4,NOL6,MARCHF8,YTHDF3,CCNT2,SNX14,ORC3,PI4KB,HIF1A,NRAS,SAV1,RNF123,ZNF91,ZFP91,DNM2,NBEAL1,IRS2,TRAPPC11,ARMCX3,OPHN1,ATG16L1,MARCHF1,ZBTB3,ATP13A3,RBM25,PLD1,NLN,KLHL9,RNF150,SMARCC1,TBC1D4,TTC30A,UBR5,TRAPPC9,RESF1,TRAM1L1,ETNK1,SERTAD2,DTL,E2F6,EPC1,ZC3H13,PANK3,SAP30L,NRP1,ZNF717,HEATR6,SLC15A4,MAP3K7,NEPRO,LIG4,POLQ,SRPK2,ANKRD27,IRF2,USP37,GASK1B,USP19,NMT1,ZNF93,SMAD3,VMAC,TGS1,PPP4R1,TMEM161B,KRR1,EPM2A,HLCS,PYGO1,TBC1D2B,FAM149B1,ATAD2,DENND1B,AMBRA1,ADAM17,PHLPP2,UBL3,PPP4R3A,TMTC3,RFX3,UBA3,TMEM245,TMEM68,VSIG10,CAD,VWA8,C3orf38,IDH3A,USP48,FASTKD5,CYLD,TNS3,WWP2,SRGAP2,ZCCHC10,PARP8,HELZ,MINDY1,SEL1L,LRRK1,ELF2,GNPNAT1,SRRD,TMEM65,ZNF43,PTPRK,CDC14B,CACUL1,ARL5B,COX10,TNS2,PMS2,RECQL,LZIC,TMX4,TPP2,PDCD4,FZD6,HDAC4,NR2C1,ADAT1,SOS1,AVL9,MED1,ZDHHC21,WDR37,SEC22C,GGA3,DNAAF2,ATG5,MTSS1,AP3M1,CPEB2,TRIM66,KIF5B,KIAA0100,TNPO1,C18orf54,NID2,MSL2,SLFN5,POT1,KLHL2,STAG1,EIF5,TMEM267,RNF4,KAT7,SEL1L3,GNA13,YIPF5,AASDH,GLI3,RABGAP1L,TRANK1,FOXRED2,MAML2,TUB,MFN2,SF3B1,ANKIB1,ZFP69,SETD7,LDLRAD4,PIGM,ATP11B,GOLGA1,PEX12,PLAA,MINDY2,MTPN,USP24,SOS2,POGZ,TFB2M,BRWD3,NUDCD1,RBMX,AKAP10,WDSUB1,TANC2,MAP3K12,ORC4,FUBP1,NMD3,KLF11,TADA2B,SMPD4,TRIM33,NBAS,ZNF71,KIDINS220,DCAF1,DDX17,C12orf66,UBTD2,FMR1,SPRING1,CHMP2B,ZDHHC2,MBP,DHX33,BBS12,EPB41,CTDSPL2,GNPDA2,LIN52,SMC6,CDAN1,EXOC6B,GPALPP1,C16orf87,UBFD1,WDR31,SLC25A23,DLG1,ABCC5,ANO6,CERT1,CRYZL1,LRP12,STK36,EPS8,GOLIM4,TM9SF3,SS18,THSD7A,ALPK1,ZFX,VPS35,RMND5A,CCDC88C,CBWD2,RABGAP1,GNAI3,PER3,CCNI,TYW5,SEPTIN7,SH3BP5,USP3,CPEB3,CEP162,DST,RBMS1,TRIP12,ZFP28,RAD18,ZNF17,SRCAP,CRBN,RNF169,POLD3,ZNF84,ANTXR2,CCP110,BICRAL,WDR26,HACD4,HOOK1,SLFN11,ZDHHC6,CLSPN,PRPF40B,PCMTD1,JMJD1C,ARHGAP21,NGLY1,VPS37A,ASB8,FUT11,KBTBD2,USP13,IFIT5,ATF2,TRMT10A,C6orf89,REPS1,SEC22B,COPS2,HELQ,CPLANE1,CEP76,ERI2,LARS1,SLC25A32,OXNAD1,TBC1D24,CSNK1G3,SH3D19,MDM2,GTPBP4,ATP6V1A,NBPF9,BRD1,SPATA13,TRIQK,RBM7,IPP,NDST1,MFAP1,PPID,PPP1R3B,CHM,SUGP2,SLC16A4,HSPA14,TTC39B,ARL2BP,POLR3D,PHF10,RAB6A,NUP50,FBXL17,UBE4A,GDAP1,ZBED4,WDCP,SLC25A40,ZFP14,EGLN1,TUBGCP6,TIMELESS,CCDC14,SMARCC2,KCTD10,MYO9A,ACAD8,ITGB1,TVP23B,CLPX,GNPAT,SGCB,ACTR6,UBA2,ATP8B1,KLHL42,KNTC1,RANBP6,SAMD12,SLC33A1,EXOC8,ATR,NIPA1,SARAF,STRN3,ARCN1,HSPA13,SCYL3,OGT,PLXNA2,GZF1,TNIK,BLZF1,CNST,CLOCK,TUT4,DNAJC16,RBM15,LRP4,BBIP1,ESCO2,BACE1,CLK1,ATXN7,MRRF,IGF1R,MCMBP,RFX7,ACADM,SLC17A5,MAP2K4,CD84,VTI1A,SLC7A1,MBD5,RAF1,KPNA4,PRKAR2A,RNF11,ZADH2,MAP3K14,GON4L,TRAM1,CDC27,CERS6,CASK,NARS1,CHIC1,WWTR1,KLHL11,ZNF45,YTHDC1,RHOBTB1,HOMER1,TMEM185B,DCTN5,PPP6C,TFCP2,GTF2H1,PASK,MTMR2,SMC1A,CCDC191,TAF5L,HIF1AN,TNKS,NR2C2,PPP4R2,TAF1A,BICD1,TENT5C,RMI1,SCRN3,CYRIA,FAM114A2,PLS1,PFKM,STAM,ARHGAP29,NCAPG2,PIK3C2B,GLS,MAN2A1,MBTD1,SEPSECS,FBXO21,MAN1A2,MANEA,RAB3IP,ARHGEF11,VPS13A,NACC2,EPB41L3,SF3A1,ECPAS,ZFP3,JKAMP,SH3PXD2A,LONRF1,RNF214,KBTBD6,SNX25,MAPK1IP1L,RARS2,ENTPD5,PIK3R4,FAM172A,THADA,CEP20,ILF3,GFPT1,CAND1,LENG8,PER2,SMURF2,FBXL3,INPPL1,NEK11,FGD4,PRICKLE2,FAM168B,PPWD1,RC3H2,DARS2,SLC30A7,SASS6,CLASP1,NHLRC3,SH3YL1,ASTE1,ADGRA3,COG8,CASP2,KRIT1,IPMK,DCAF7,COG5,SERINC1,PROSER1,MAML3,VPS50,WAPL,SHLD2,ZZZ3,UGGT2,ZMYM5,C2CD3,CSNK1D,PDCD6IP,MBNL3,SETX,TOP3A,TRIM13,ARHGEF38,LRP1,CD93,GRPEL2,OSBPL1A,PHC1,LRRFIP2,RAI1,SACS,MTUS1,PABIR1,MTRR,PUS7L,SLC39A9,SLC25A24,MEIS1,FZD5,CTBS,CD47,GGNBP2,ERCC6L2,RTF1,PPP1R13B,RASEF,FBXO3,ATP11C,ZBTB2,RTTN,REV3L,IWS1,AFDN,PEX26,ZFYVE1,AGTPBP1,ENOSF1,MAU2,DZIP3,GANC,WDR7,FNBP4,TOX4,TMF1,SSH2,SUFU,MLLT10,BHLHB9,PEX11A,DENND5B,TSTD2,AHR,MED23,BAG5,ZNF720,STIL,NCKAP1,MIER3,ILK,BTBD7,PAFAH1B2,SBNO2,PDHX,GPBP1,ARHGAP32,LSG1,EHMT1,TTBK2,PSD3,TP53BP1,CDK19,TMLHE,ZFHX3,ARID4A,RNF115,NCR3LG1,SMAD4,AASDHPPT,TTC37,VCPIP1,WASF2,TENT5A,TGOLN2,PPP3CA,CLIP4,PLPP3,RBBP9,RHOBTB3,WDR27,MPDZ,FAM104A,SPAG1,BBS7,CDCA2,PLXNB1,TFDP2,CCDC134,PNISR,GEN1,SFPQ,TMEM63A,SEPTIN8,SMARCA1,DNAJC9,ARHGAP42,GALC,ZNF10,CTBP2,PCYOX1,FBXO9,FAM126B,ABCB10,FAM234B,CEP164,AFG3L2,CEP120,CDC42BPA,B3GALNT2,OSBPL9,TGFBRAP1,PKP4,ROCK1,WASHC2C,SHANK2,IQCE,N4BP2,CEP250,ARID2,NUP214,STAM2,TTC5,MALT1,ITGB7,PLEKHH1,PICALM,DBR1,CCDC6,LHFPL2,NFKB1,HEATR1,SLAIN2,WDR3,PBRM1,RUNDC1,URB2,TTYH2,PHKB,TCAF1,DSP,ANKRD10,TENT4A,PPP4R3B,OBI1,NECAP1,CPNE3,USP10,MTMR12,RND3,CCDC50,PHF8,SSH1,KLF6,FYCO1,RAB1A,ZFAND3,EEA1,LPIN1,UBE2W,PHTF2,CHD6,RBPMS,AMOT,ANKS6,BMPR1A,CLDND1,PCSK7,PTPN3,KIF27,FBXW7,SLC7A6OS,ZFP30,SPRTN,SLC25A44,POLI,AGFG1,LIN9,PRPF39,ITSN2,DLC1,HYOU1,ZFAND1,SRRM2,PJA2,BTN2A1,IDS,MTHFR,SLC4A7,CMTR2,ADGRA2,GORAB,UBR3,CLPB,CEP44,DBT,PROSER3,TTI2,GMCL1,PTPN23,SLC37A3,C10orf88,KPNA3,KRAS,ANKRA2,CARD6,TFAM,SOGA1,CELF1,FAM126A,CDC40,EPG5,CCDC121,PEX3,CANX,PMS1,QRICH1,FAM160A2,ZCCHC24,ERAP1,CYP7B1,ZNF83,NSUN6,FAM161B,STAU1,EDA2R,STARD4,DPH1,UHRF1BP1L,CDS2,ASPH,RUSF1,COPB2,WASHC2A,RBBP5,SZT2,USP32,MYO18A,PRKDC,FECH,GIN1,MARK2,FASTKD2,STK4,SLC2A13,CRAMP1,ARL6IP6,ARHGAP31,CENPI,BCL2L13,XRN2,CCAR1,SACM1L,CENPJ,DAG1,TMEM131,AREL1,MTREX,SLC10A7,EAF1,KLHL8,PCBD2,NANP,MFAP3,GTF2H3,TLN1,IFIH1,STX2,RUFY2,ERMAP,CDYL,TDRKH,HCFC1,RAD17,PDCL,NUP133,USP51,AGAP6,PELI2,CDC42BPB,RYBP,CS,TNFSF15,MOB1A,RBM39,HMGCR,GPATCH8,PGS1,MDC1,GNG12,FAM120B,SCRN1,CKAP5,FBN1,BLOC1S6,EIF3C,FAM210A,INTS3,TWSG1,PDS5A,AZIN1,AP4S1,BIN3,PHLDB1,EFCAB14,ATRX,FEZ2,ABCA2,TRIB2,RBM28,IKZF5,C2CD5,GRHL2,GLIS3,FRA10AC1,ZBTB5,PTEN,BCLAF1,GAB2,PIK3CB,OGA,RASAL2,PAN3,DCHS1,MED28,FOXO1,RNF168,MAP3K9,RRP1B,DDX59,ZC3H4,NUMB,SHTN1,RGS5,ITPRIPL2,CALCOCO1,ANKRD52,METTL25,DNAJB9,DPP8,APAF1,MMGT1,TOGARAM1,FAM217B,LPGAT1,FAM76B,IRS1,LRRFIP1,RNF217,TLN2,EOGT,NOTCH1,ADNP,ESYT2,FBXO33,MBD1,JARID2,ARID1B,ARRDC3,ERC1,GID4,SPPL2A,PRDM4,TCF20,SPTLC2,PTCH1,MRNIP,POLR2B,STK17A,SS18L1,FBH1,HSPA8,REL,ABL2,RSBN1L,RAD52,URB1,M6PR,PDE4D,STRN,MARF1,INO80,CEP290,NEK1,CERS2,RAD21,WSB1,TRAK2,CPSF2,RSPRY1,PGM2L1,ALS2,NSD2,RAP1GDS1,TRIM52,SGMS1,NCBP3,ATL3,DEPDC5,TTC13,SALL2,BAHCC1,BRPF3,CUL4A,MTX3,SAP130,YOD1,MCM3AP,TUT7,STRADA,NPTN,NAF1,CDC14A,TM9SF2,RANBP9,TJP1,LMBRD2,ARNT,CREBBP,DOCK4,CHURC1,HTT,GOLPH3L,TRIM35,CHML,DNAJC11,SFMBT1,IKZF2,C19orf71,TRMT61B,DOT1L,SDAD1,LDB1,ARHGEF12,ADCY3,TUBD1,UTP15,LONP2,CDCA7L,FRYL,TBC1D31,KIF13A,USP31,NGRN,DENND4B,NSUN3,TEP1,NOTCH2,MAN2C1,TAB3,SUCLA2,TBC1D5,SFMBT2,WHAMM,LIN7C,TET2,CFAP97,SPAG9,GART,SAMHD1,RNF141,CMTM4,XRN1,TTF2,RNF139,GLYR1,AP3B1,ANAPC1,WDR89,TAB2,DIAPH1,DHX38,STX7,CCDC88A,RPS6KA3,N4BP2L2,TXNDC16,RAB30,DCLRE1C,FBXL4,L3HYPDH,RNF34,UNKL,NEDD4,WWP1,STIM1,GPCPD1,ZNF24,SIDT2,ASCC3,ZFAND5,FAM120AOS,SIPA1L1,KMT2B,IRAK4,GSTCD,NBN,SERINC5,RHOT1,TP53INP1,KLHL28,KDM5B,NOP9,RSF1,THAP2,VIRMA,PIAS3,CLK4,COMMD2,AMN1,ZUP1,USP30,ARL1,RPAP1,PPP1R3D,GPRIN3,GPRASP2,KDM5A,SDHC,ARL10,SERAC1,SLC40A1,FBXO34,BAHD1,ARHGAP19,SIAH1,ANKS1A,TRIP4,NOD1,ARIH1,MARS2,LRIG1,CARNMT1,PPTC7,ARID4B,YTHDC2,FEM1C,DDB1,FAN1,TOP2B,RPAP3,HS2ST1,RBBP4,TMEM39A,FOXJ3,TBC1D9B,SLC35A5,BMI1,KDM7A,MIER1,NCOA6,TTC21B,NPAT,AP1G1,ANKRD11,RRM2B,C4orf46,NBR1,ARID1A,RAB3GAP2,PRKAA2,UTP23,SETD5,ZFP62,SOCS4,BRAF,ACSL4,FRMD4A,BAZ1A,NKAPD1,OSBPL3,PTPN14,GUF1,SLC35F5,CUL9,PRRC1,DPYD,SSR1,PTPN13,CAMSAP1,LRRC37B,DHX29,SKIL,UBE2O,RSRC1,TAOK3,ANKRD28,FIGNL1,CTDSPL,FUT10,R3HDM1,KCTD12,TLR1,NT5DC3,SMURF1,BRD2,LSM11,DPYSL2,COG7,CCDC186,BTBD9,ZFC3H1,MIOS,CLCN3,CENPE,SP3,DNAJC3,ARHGEF7,CHSY1,HIPK1,SIK3,GALK2,PIK3C2A,PAFAH1B1,PALB2,EIF2AK2,ZNF69,ABCE1,TSR1,FMNL3,SLF1,MARCHF6,RFFL,EIF4ENIF1,CUL3,LTN1,PLCH1,ATM,ADO,UBN1,SNX19,MED14,SPTBN2,NUP54,IQGAP1,CDK13,PRUNE2,TRAF6,BBOF1,FEM1B,CABIN1,SLFN12,PAPSS1,RELCH,RNF14,RSBN1,ATG12,NR1D2,PIBF1,AHI1,LAMTOR3,RORA,CNOT6L,KDM5C,ATP8B2,RNF144A,PGAP1,MOB1B,USP53,FAM111A,PARP11,ARHGAP18,GCFC2,ANKMY1,UBR1,PHF12,CEMIP2,BEND3,RPA1,ACTR8,RAPGEF1,KIF13B,PDP2,SNRNP48,RC3H1,UBE2J1,NBPF3,GALNT7,AP2B1,NAMPT,ZNF44,SLC12A6,SMG1,TAF7,MTURN,KANSL2,XIAP,ELP4,BCLAF3,SLC35B4,MFSD9,DNAJB14,CHUK,PPM1B,MTOR,MCM9,IFT80,GMPS,PHTF1,ABRAXAS1,PELI1,ZCCHC14,MYO5C,ATP11A,CDK5RAP2,NFIC,SPECC1L,UBN2,FMN1,KIAA0586,RBM47,ABHD18,SLC5A3,SMCHD1,PRR12,POLR2A,CREBRF,FOXN3,ANGEL1,SMYD4,KLF3,TARS3,CYP4V2,PRKD3,ZNF41,ZC3H8,LATS1,ARHGAP17,AKT3,TRAPPC6B,ATE1,WDR82,RAB2B,SLC38A9,APPL2,EPS15,HEATR5A,SGTB,JADE2,KIAA1958,DCAF6,WDR76,KMT2D,SYNRG,CYB5R4,FRMD6,USP40,G2E3,TRAPPC13,GPR180,MCFD2,TRIM44,TUBGCP3,PIGO,CBLL1,ROCK2,KIAA0319L,ARMH3,BCL9L,NMT2,ANKRD26,PSMD5,GSAP,GGA2,BTBD10,DOCK8,MYH9,WAC,MRE11,RBM6,TRMT13,AKTIP,SREK1IP1,ARHGAP12,COBLL1,NT5C2,SORL1,AGPS,VPS54,CCDC142,LYRM7,PAXIP1,FLT1,SYNE2,CBX5,KIAA1549,RYK,EPM2AIP1,NAA35,PGM3,TMEM144,FAM168A,MLLT1,MAML1,GTF3C4,MPPE1,ANKFY1,BORCS5,DIXDC1,TPR,PIGB,NOC3L,CEPT1,DMXL2,CNNM2,NUCKS1,CUL4B,DET1,TBC1D15,CLCN7,ESYT1,TNPO3,INVS,EPRS1,BCL2,CEP63,MYO9B,EIF3A,XRCC5,GRSF1,STARD13,WDR11,TEX2,EXOC2,KDM3B,ADPGK,RBM23,AKAP8,CEP57L1,SEC24B,VPS13B,WDR12,KATNBL1,TAF4,WDTC1,TBP,GABPA,SLX4IP,SIPA1L2,DPY19L1,IRF2BPL,RNF145,GATAD1,PFKFB2,TET3,TTC30B,BNIP2,PDPK1,PPM1A,ST3GAL1,INCA1,ATMIN,GFM2,UBXN7,LRCH3,CNOT4,SON,DHX57,PITRM1,ALG12,RLIM,ZMIZ1,MYO5B,SMU1,PTCD3,MAGI1,NDE1,NFRKB,TMEM192,RAD1,CTPS2,BRWD1,CNOT1,NIN,DDI2,CHD3,RBMS3,ABCC4,NAPEPLD,PDIA6,RO60,TBCK,ACBD3,SEPTIN2,BBS10,ARHGEF3,SP4,RBM43,MBIP,TMTC4,NOTCH3,ARL5A,CDC23,HDHD2,OSBPL11,TMEM41B,DCAF17,VPS41,ZHX3,DDHD1,MAP4K5,PHAX,DLG5,RBM41,CIAO1,RNGTT,FBXW11,KDR,CCNL1,USP28,TMEM263,ASB7,UBE2G1,POMT2,ZDHHC20,NCOR1,SCMH1,MADD,RBM45,NFXL1,NFIB,RNFT1,DDX31,VIPAS39,ADCY6,DCUN1D1,ABI1,NUP98,WDR36,PRUNE1,RANBP10,RPS6KC1,RMDN1,KANSL1,TBC1D20,ZMYM3,DNMT3A,HAUS6,TBC1D8,SYNJ1,LRRK2,CLINT1,GOLPH3,PCYT1A,FAM161A,KDM2B,FRY,POLE,C12orf4,DDX5,G3BP2,STX17,SEC24D,PPP2R5E,C8orf37,CWF19L2,LYST,CNIH1,EMC1,PNN,MICAL3,PDGFC,LUC7L2,IRF2BP2,GAPVD1,ARHGAP5,DGKD,THNSL1,FAM169A,SNX13,IQSEC1,TEC,KMT2A,REV1,NEURL4,PREX1,KDM1B,NRIP2,RAB5B,FAM135A,SEC14L1,ETV3,PAIP2B,RWDD2A,LAMP2,CFAP44,CAMKK2,CEBPZ,HACE1,GABPB2,KLF9,PIGA,ATXN7L1,TMEM167B,MAPKBP1,ODF2L,C21orf91,TAF9B,TRIM25,JAZF1,ATN1,TBL1XR1,MYOF,NRF1,VASH1,WASHC4,ZXDC,TTLL11,NSRP1,SPTLC1,FNDC3A,CCNC,RARB,PIGL,ZC3H7A,BAZ2A,BRIP1,GEMIN5,DCAF8,BRI3BP,ABCA5,PAK2,NKIRAS1,SNX29,MAP3K4,CEP350,CXorf38,PTCD2,CLASP2,BCL2L2,ATP2B1,SUPT7L,PSME4,QSOX2,EXTL2,RICTOR,SNX16,ARL6,CTSO,OSGEPL1,CYTH1,RBM4,SLC41A2,RAB11FIP2,IVNS1ABP,URI1,USP7,EXOG,KCTD9,NCOA5,SCAI,DCTN6,LRP8,GAN,DCAF5,ANKRD40,PRIMPOL,ABHD2,GCN1,COPA,WDHD1,UBQLN1,TENT4B,TIRAP,RAB22A,SCAPER,WDR20,EZH1,LRP6,POLR3A,BRF2,SLC7A6,SLC20A2,DYNC2I1,TLE1,ITGA2,ASXL2,NINL,GCC1,PNPLA8,MAP4K3,COX15,DUSP16,UBXN8,CARMIL1,TC2N,PFAS,SLC36A1,VPS52,ELK4,CNNM3,TWF1,ASAP1,PSME3,USF3,LMBRD1,FBXO11,LPIN2,BBS9,TAX1BP1,ZMAT1,CSGALNACT2,ZW10,RERE,SGPP1,TEX10,APPBP2,TBC1D12,POC1B,CNOT2,SHROOM4,ABCA1,C1orf109,RFX1,AFF3,RBM48,UBE2D3,PIKFYVE,CARM1,LGR4,RBM5,RAB3GAP1,ULK2,MAP2K1,NKTR,PLA2R1,IPO5,CASZ1,PITPNM3,MTF1,FARP2,SLC30A9,CEP170,SLC35B3,CUL2,ETS1,SCYL2,ERCC6,WDR33,OBSCN,CEP85L,PEX5,PTPRA,NRIP1,C17orf80,TRA2B,PIAS2,TSC1,LRRC40,USPL1,TTC33,CCDC112,PRPF4B,LACC1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | PAQR3,TRIM33,ARHGAP19,C16orf72,WEE1,KDELC2,CLTC,CCNT1,NUP98,LRP1,WAC,MECP2,FRMD4B,VPRBP,PFKFB3,SMARCA5,PGS1,ATP9A,DGCR8,USP36,SMARCA2,ANKRD46,BRIP1,FAN1,SOX5,EFHC1,PIK3R3,ULK1,TIFA,STK3,CDK5RAP2,ANKRD6,RAB11FIP2,POC1B,FITM2,PAWR,ABCA5,KLF7,KIF16B,UTP20,RNF219,ORC3,HUWE1,ZSWIM6,KIAA0355,ATP11B,CASP8AP2,DCTN1,LIMS1,HAUS6,RINT1,DIP2B,USP32,EP300,CTTNBP2NL,DDX52,ATF1,PRPF18,FRY,KLHDC10,STAT2,STIL,SNX27,PRPF40B,LDOC1L,UBXN7,HOOK1,NUS1,CCSER2,DNM2,ANKRD13C,NLK,NCOA2,ATG4C,TET2,INTS3,SLC30A7,TCAF1,CALCOCO2,HERC4,DHX33,ZFYVE26,PLAA,MAPK8IP3,WDR31,UHRF1BP1,PTPN9,TBC1D9B,CCDC66,RASAL2,EVI5,MZF1,ERCC4,MYO5B,TMEM263,SKIV2L2,FAM160B2,CDK6,SSH1,EXD2,LRRC57,C2CD5,LRRC37B,SMU1,TBC1D9,CANX,CEP78,KLHL8,STRADA,FBXL18,LYST,UBTD2,PRKD3,SPICE1,TLK2,WNK1,PDE4D,MARCH8,DNAJC16,TMED5,IFT81,DHX15,PRMT9,LANCL1,SLC38A9,MOB1B,ARAP2,CDK13,FAM111A,PIK3CG,BRD4,RUFY2,TM9SF4,BRD3,MAN2B2,MED21,SLC41A2,MED1,LEPROTL1,TTI2,EPM2A,CFLAR,TERF1,SRPK2,KIAA1549,SRP72,CARD8,GANC,ERCC3,CTDSP2,UGGT2,RBMS3,NUDT12,PDP1,SEC22B,FLI1,CDC27,DCAF8,KIDINS220,GK5,PCNT,TPR,CCDC25,IARS2,SOCS5,BMS1,RP2,CCSAP,SPTLC1,MYLIP,XAF1,ATL3,LPCAT3,XPO4,REST,METTL14,CCDC18,DLG5,METTL6,C6orf89,NUDCD1,TUBGCP4,WSB2,DHX30,APP,ARL13B,PITPNA,VEZF1,PARN,CTC1,ABCB10,RNF24,TAF3,GEMIN5,FER,NCK1,GALNT11,MAK16,NPEPPS,IRF2BPL,HAUS2,SLC25A16,WDR48,SLK,LCA5,ERAP1,SS18,CRKL,MBNL1,DHX29,DIEXF,MLLT6,ZNF14,ADAT1,SLC4A1AP,FAM185A,JMJD1C,MASTL,WIPF2,ATP2C1,GGCX,SHROOM3,NAPEPLD,KIAA1551,INSR,SESN3,FBXL20,ITPRIPL2,SLC20A2,AGO4,ATAD1,PAIP2B,FAM133B,CPSF2,EXOC6B,TM6SF1,STAU1,MINA,SLC4A7,GNE,PLEKHA5,RIMKLB,SEC23IP,ELMSAN1,USP9X,ARMCX5,AGO1,FZD5,ZC3H11A,BTAF1,ACBD3,GTF3C1,DBR1,MFN1,PIK3R4,FAM122B,PFAS,ZFAND1,LARS,IFT74,PAPLN,FOXO1,PAXBP1,NBPF3,SRGAP3,XIAP,MLLT10,CTDSPL2,AKAP12,TNFRSF10A,MPHOSPH9,DDX46,TLK1,FNDC3B,ZFHX3,ZFP30,UBE2J1,PDCL,RASSF8,DLG1,HELZ,WSB1,XPNPEP3,MRPL42,MKI67,ANGEL2,C9orf3,PRRG1,MLLT1,VPS8,LIMD1,DDX24,ELF1,MLXIP,UBA2,ING5,PRKCA,GTF2I,ZBED6,WWP2,BCL2L13,CEPT1,ZC3H4,CEP135,RCAN3,CSDE1,TRIM25,ATXN7L1,CLIC4,G3BP2,PATL1,PPP4R3B,SLC35A3,PAN3,PCBD2,COG7,HSPG2,PLEKHG1,ARL5A,NFIA,USP34,GATC,TXNRD1,DHX9,ATAD5,PI4KA,ZBTB6,TMEM123,MDM4,DDX1,CASP10,GMEB1,USP42,ERC1,UST,GTF2H3,CCDC174,TASP1,SEC24B,NCAPG2,KDM5A,PAFAH1B1,RFX7,CHST3,CTR9,DCHS1,AMBRA1,ACLY,ZMAT1,SETD7,WDR60,SMAD1,SLC23A2,UBAP2L,ARHGEF10,RBM43,KIF14,ZDHHC7,KLHL28,RAD52,PIK3CB,ALPK1,RNF213,GORAB,FASTKD1,SMG1,RARS2,NCOA6,LONP2,KBTBD6,BPTF,RPAP1,EPC1,DLST,TWSG1,GCN1,TBP,RABL3,DDX17,SPTBN1,TNS1,PGAP1,KANSL1L,MSL2,IFT140,IQCE,MOB1A,CTPS2,ADAMTS5,MYOF,TAF2,MTMR3,LDAH,ZNF83,GUCY1A3,KLHL7,SH3D19,RABEP1,FBXO28,KPNA6,RSPRY1,USP4,EIF4G2,SUPT7L,PIK3C3,ARHGAP24,PTPRA,TMEM8B,C12orf66,ASCC1,SPPL2A,ZC3H6,FAM179B,LARGE,DOT1L,C2orf42,GAS2L3,CDC42SE1,MCMBP,PHACTR4,PAFAH1B2,SEC31A,CDYL,YOD1,NSUN4,TUBGCP3,SIN3B,PCMTD1,RBBP8,POLD3,TMEM131,HEATR6,ZBTB4,SERINC5,TOPBP1,YEATS2,GAB1,SMG6,CSNK1A1,ZNF45,RFWD3,TRAPPC10,ABHD18,EYA3,AP3D1,ANKRD26,SGTB,PDP2,NFX1,SPTY2D1,MAVS,GAPVD1,ATP8B2,STAM,TAF1A,WAPL,RALGAPA1,RAD17,PALB2,BAZ1B,NEU3,TIMELESS,DUSP16,SLC25A24,PTPRG,KLHL11,MFSD8,TGFBRAP1,UBR5,KIF27,POLR3D,FRRS1,CCNL1,KDM4A,ASAH1,ELMO2,S100PBP,VPS37A,DDX31,RBMS2,TUBD1,CPSF7,RLIM,WDR43,SENP5,SLX4,RBM6,CCNY,PRMT6,TOM1L2,N6AMT1,RB1,FKTN,TBC1D8B,CASK,ZMAT3,RHPN2,SLC9A6,KIAA0556,ABHD16A,PEAK1,NEK4,BRCA2,CC2D2A,LYRM2,NRDE2,ZYG11B,DCAF7,ATXN1L,RASSF2,DNAAF2,MAST3,FAM220A,RAB6A,ZCCHC10,SMARCC2,OSGEPL1,PLXNA3,ACACA,COIL,FAM73A,ADRBK2,PEAR1,CKAP2,SF3A1,VPS13C,ORC2,FHDC1,MID2,CCDC125,NXPE3,NBAS,GTPBP10,PPIL4,BCL2,PPID,BNIP2,ITCH,ZNF70,C16orf87,TCFL5,RORA,CACUL1,EPRS,BOD1L1,RRM2B,SENP2,FBXO33,CBL,UHRF1BP1L,TIA1,RBM5,CCNH,CEP290,SYNGAP1,H6PD,NCBP3,RNF185,YME1L1,RAB3GAP1,KPNA5,GPCPD1,HHAT,LARP1,BCL9,CENPE,MYNN,EXTL2,THAP9,PMS2,TRIM56,TMEM87A,RAB10,IFNAR2,CRYZL1,VWA2,ZUFSP,CELF2,RIF1,CELF1,ENOSF1,SMURF2,NCOR1,KDM1B,UPRT,ITSN1,PANK2,RASEF,XRCC2,BCL6,PFKFB2,CDKAL1,CENPJ,DPP8,ITGA4,HBS1L,NEK7,CCDC82,MLEC,TCEA1,ROBO1,PTPN12,MPDZ,PTPRB,RALGPS1,USP28,PRRC1,TCP11L1,PAPD5,KIAA0907,PLEKHA2,VAMP4,ZNF69,USP13,MAU2,DNMT1,NARS,CLASP1,TLR4,PUS10,BBIP1,GLG1,SIKE1,COPA,SUZ12,NUMA1,CEP162,VTA1,OSBPL3,FAM35A,CNOT7,CAD,LZIC,PIK3C2B,GIT2,FANCC,RERE,AKAP1,GNPNAT1,NID2,POLR3A,DPH1,CDC23,PHTF1,NAA35,NRAS,TAF5,MAML2,OSBPL11,EAF1,NLN,MAPK1IP1L,UTRN,SERAC1,C10orf76,EML1,LMTK2,BRPF3,CHD8,ZZEF1,TFCP2,ABHD17B,IPO5,TMX3,CLPX,FASTKD5,HECA,PSMD5,SPIN4,C18orf25,PRKAA1,RANBP2,MED28,NMD3,NRIP1,RPL7L1,FOXJ2,FAM175B,ODF2,ENTPD5,IPP | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | ATP6V0E1,ETHE1,PDCD2L,CENPB,ATP6V1F,NUDC,PEX11G,PSMB3,CCDC167,PGLS,HHLA3,RNF113A,PQBP1,CUEDC2,GPATCH3,EIF3G,TNFAIP8L2,DGCR14,CENPM,FKBPL,TRAPPC3,LAMTOR4,CHMP2A,PIH1D1,COX6A1,ALKBH4,TUSC2,RNF167,MIIP,PRDX5,HINT2,ANKRD54,TWF2,EIF3F,ENO1,TIMM22,CORO1B,C14orf2,CARD16,NDUFB11,PPCDC,NT5C,FAM234A,MACROD1,RPL35,SUGP1,ARPC5L,POLR2J,HCFC1R1,MAP2K2,SLC25A11,GADD45GIP1,CAPNS1,C16orf91,ZFAND2A,FKBP8,YDJC,TBL3,SERTAD1,MEA1,G6PC3,COMTD1,CLPP,SNRPB,HDHD3,MRPL52,UBXN1,GNB2,COX7C,CSTB,UBE2M,NOSIP,HMOX2,UBXN6,AIP,DYRK4,RBM10,GPAA1,NDUFB1,VAMP8,SRP14,PSMD4,EMC8,CDC34,TMEM161A,LSM2,S100A10,DAD1,UBALD2,QTRT1,PSMA5,ABHD12,NENF,RBM42,ZSWIM7,CLTB,ADRM1,SAT2,IFI27L1,THOC6,SCNM1,ATPIF1,S100A13,GTF2H5,WDR13,C12orf45,BABAM1,MZT2A,SGF29,ZMYND19,SLC25A10,NMRAL1,MRPL4,CTSD,THOP1,SNU13,APEH,ENDOG,ECSIT,GPX4,CYC1,BAX,PARK7,ATP6V1E1,VAMP5,PPP2R1A,NSMCE1,SNRPC,STOML2,ATRAID,ITPA,MCRS1,PRR7,SHFM1,THAP3,FBXW9,VPS28,TIMM17B,CUTA,OCEL1,BANF1,FAM71E1,UCK1,PTDSS2,B9D2,HSCB,NTMT1,RNF126,HDDC2,SURF1,ECI1,FAM195B,CLTA,ABHD14B,NUDT22,INAFM1,NR2C2AP,C20orf24,NDUFA8,NUDT1,UBA52,ANKRD39,SH3GL1,CNPY3,MRGBP,GUK1,ABHD11,HSPE1,APOE,PHB2,PYM1,OXLD1,ATP6AP1,HM13,ELOF1,EBPL,PSMB1,C7orf50,TPRA1,B4GALT7,TMEM160,DNAJC4,NDUFA1,TRIAP1,RPS27L,AURKAIP1,RPSA,SSU72,PRR13,PSMA2,PLP2,PNKD,YIF1B,H2AFX,CCDC137,NDUFS5,ANAPC15,CITED4,RRP7A,DAPK3,SYNGR2,PPP1CA,TRMT112,USMG5,PES1,BCAP31,RABEPK,MRPS36,KIAA2013 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | DPY30,TECR,DAPK3,RNF181,SF3A2,SLC2A8,MRPL58,NDUFA8,PAXX,FTL,PCYT2,NACA,GSTP1,ANAPC11,PIN1,TADA3,RASSF7,EDF1,CLPP,CCDC159,AUP1,RPL35A,ASL,ASPSCR1,TRAPPC6A,CAVIN3,SERPINB6,C4orf48,OST4,MRPL43,MYG1,STX10,SLIRP,CNPY3,TSR3,ABHD14B,TLE5,PSMA4,AP2M1,GCAT,DHRS4L2,COPE,TIMM10,SCYL1,EMP3,PPP1CA,GMPPA,NDUFB9,KCTD17,UBALD2,MRPL41,RNASEH2C,COMMD1,ORAI3,MRPL33,PPDPF,NDUFA12,PPIE,ARFRP1,NDUFV1,MRPL2,S100A13,MRPL28,HMOX2,NDUFC1,MCTS1,HM13,ETHE1,NMRAL1,LYPLA2,HRAS,GSTO1,ACD,RPL32,STUB1,PTMS,ZBTB8OS,MZT2B,NME2,NDUFAF8,DEDD2,RPSA,NDUFS6,MRPL4,SHKBP1,MMAB,NOSIP,SAC3D1,IPO4,NAA10,SLC25A1,NHP2,PAF1,FLYWCH2,HIKESHI,TRPT1,MRPL20,PGLS,ANKRD54,ATP5PF,FKBP1A,PCGF1,PEX16,HINT1,NR1H2,PSMD8,NDUFS8,NDUFS7,PQBP1,UBE2F,NFKBIL1,HES4,PSMB1,HDGFL2,COX7A2,ATPAF2,EDEM2,TRAPPC2L,SLC39A3,PSMB6,PFDN6,MRPL34,PSMB3,MRPS24,RPS29,OGFR,FKBP2,GFUS,TMA7,KXD1,DNPH1,GEMIN7,TMEM147,RPL37A,DPP7,REX1BD,SMIM12,PRDX4,FAAP20,NUDT22,RPL36A,ENDOG,TMEM179B,RPS24,AURKAIP1,RFXANK,ALDOA,BLOC1S1,ATP5PO,SLC25A11,NAA38,BCL7C,MAD2L2,TALDO1,TMEM187,TMEM53,ARPC4,SLC25A39,FAM234A,YPEL3,POLR2H,TMUB1,ACOT8,SERF2,ATP5ME,PA2G4,COX4I1,C12orf57,SDHAF2,THYN1,DCXR,PHPT1,TOM1,RPL35,KRTCAP2,SNRPD2,NDUFA11,CAPNS1,TMEM208,C12orf45,FAM3A,RABEPK,FKBP8,JPT1,RHOG,RPS17,UBXN1,RPS11,TAGLN2,C6orf226,PYCARD,ATP5PD,ERCC1,CCDC124,PPP1R7,BOLA3,NDUFB1,SQOR,GPAA1,MRPL22,RNF25,ELP5,RBM42,TMEM222,COA8,BUD23,NDUFB4,ELOB,BLVRA,RPS21,MRPL47,CDK5,TRAPPC2B,ZNHIT2,GUK1,PSMD4,NDUFA9,DTYMK,IDH3G,SURF2,RABAC1,DDX56,RPP21,BSG,NUDT14,YBEY,DMAP1,CLTA,VEGFB,STX8,JMJD8,NANS,PSMD9,TUBB4B,HINT2,C7orf50,SDSL,GMFG,ATP5F1D,TRAPPC3,OTUB1,NTMT1,COX5A,SS18L2,PPP1R35,EIF3K,TAF10,RPS27A,AGTRAP,EPN1,SAT2,MRPS15,ATP5MF,PRR13,ARL16,SLC52A2,NFKBIB,METTL26,B4GALT7,BID,TBCA,SHARPIN,DNAJC4,FIBP,SLC66A2,CDC37,CHMP6,DNAJC8,LAMTOR2,NUDT8,PEX14,GSTZ1,CHID1,COASY,C1orf35,CCDC61,CCT7,MPDU1,BCKDK,PTOV1,ATP6V0B,BABAM1,SCNM1,CTU2,NDUFS5,PPIH,CHMP2A,NME1,PTTG1,RPL13A,IFITM3,AVEN,RPS26,RNASEK,THAP7,STYXL1,LGALS1,DYRK4,TFPT,HSD11B1L,RAB4B,RFC2,YIF1A,GPX4,ATP6V0D1,USE1,FAM174C,STXBP2,MRPS34,ATP5MC2,ALG3,PSMB10,ELOC,MICOS13,WDR24,LCMT1,SIVA1,MRPL55,ROMO1,CYBA,NDUFB10,NELFE,GAPDH,PARK7,COMTD1,SNF8,MVB12A,DYNLL1,PSMC5,MYL6B,HCST,SERGEF,RFNG,RNH1,COX17,HSPB1,PLEKHJ1,ZFAND2B,EIF6,AKR1A1,COMMD7,MPND,RABEP2,COX6C,LIN7B,SGF29,MRPL54,PDCD2L,CUTA,GSDMD,STOML2,NDUFB11,VKORC1,FARSA,TSSC4,G6PC3,AIP,MYL12A,IRF3,BANF1,PRR7,RPS6,NOP16,EMC9,ILKAP,RARRES2,ORMDL2,NT5C,OXLD1,NTHL1,POLR2I,PRADC1,MRPL52,PSMG3,RHOC,RHOD,RPL10,FASTK,MFSD3,UBL4A,PSMB7,RPL27,ZFAND2A,RNF113A,ARL6IP4,COPS6,EMD,UBA52,RACK1,ALKBH7,GLA,TMEM219,PPIA,ANAPC15,PHKG2,NSMCE1,BAG1,HSD17B14,CCS,NDUFAF3,FKBPL,CARD16,MSRB1,PSMB5,PUSL1,TP53I13,UBL7,RPS10,MPG,HAGH,ARPC1B,STARD10,PPM1G,SLC27A5,NDUFA13,NAGLU,HDDC2,ATRAID,CLEC11A,MIX23,SMIM26,THOC6,PET100,SMPD2,CORO7,CLIC1,SURF1,COX5B,COX6A1,SELENOW,EGLN2,PAFAH1B3,WDR45,BCL7B,PIGQ,POMP,THAP4,TMEM160,DUS1L,TCEA2,NOP53,ANTKMT,SIL1,MOSPD3,ARHGDIA,GAMT,RPL36,SCAND1,DDA1,ZNRD2,AAMDC,COX6B1,FLAD1,UQCRC1,PSMC3,GPS1,DDX39A,THOP1,BAD,POLD2,ECSIT,USF2,ZMAT5,GTF3C6,PHLDA3,DPM3,MRPL53,SRP14,GALK1,BLVRB,SSBP4,AKR7A2,GIPC1,C11orf98,MCRIP1,DYNC2I2,SNRPD3,CAPG,ERGIC3,UQCRQ,TXN2,FAM32A,TMEM256,EIF4EBP1,PSME2,HSPBP1,TMEM205,QTRT1,PSME1,NAA60,EIF3G,ADRM1,RPL23A,RPN1,OCIAD2,B3GAT3,HSPE1,TSTD1,TMEM120A,PES1,ECI1,RPA3,PFDN2,NDUFS3,COA4,PIH1D1,LAMTOR4,SSR4,NME4,NAXE,SIGIRR,CLN3,SCRN2,CIAO2B,SEC61G,CENPM,RPS13,UBE2J2,CTSD,GFER,MAF1,PYM1,ATP5MC1,TRAPPC1,CFL1,HOMER3,PLP2,PYCR3,EMC7,NOC4L,NSUN5,MIF,NDUFV3,UBE2S,CCDC85B,TMEM126A,NDUFAB1,ATP5IF1,MCRS1,SMIM29,YIF1B,IFI27L2,RPL23,HHLA3,CD63,ETFB,LY6E,HCFC1R1,NR2C2AP,ABHD12,OCEL1,COMMD4,NDUFA3,DPCD,KLF16,TMEM134,SMIM4,SWI5,SNU13,TBCB | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000259366 | ENST00000560865 | exon_skip_363747 | chr22:23877720-23877869 | -13.68 | -0.1150 | SLC2A11 | ENST00000345044 | Frame-shift | | ENSG00000259366 | ENST00000560865 | exon_skip_29546 | chr1:114737470-114737563 | -9.86 | -0.1297 | CSDE1 | ENST00000358528,ENST00000534699 | In-frame | | ENSG00000259366 | ENST00000560865 | exon_skip_476549 | chr7:76013741-76013887 | -11.68 | -0.1270 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000259366.1 | ENST00000560865.1 | 48 | 310 | 164 |
|
