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lncRNA: ENSG00000259330

Summary for INAFM2

Gene summary

Gene information	Ensembl ID	ENSG00000259330
	Gene symbol	INAFM2
	Gene name
	HGNC
	Entrez ID	100505573
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for INAFM2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000259330	3.870296e+02	-1.232782e+00	2.232151e-01	-5.522845e+00	3.340000e-08	1.530000e-06	DOWN	ESCA
ENSG00000259330	1.020762e+03	1.439895e+00	4.074972e-01	3.533509e+00	4.100830e-04	5.770502e-03	UP	PCPG
ENSG00000259330	2.034464e+02	-1.481656e+00	1.103976e-01	-1.342108e+01	4.550000e-41	2.450000e-39	DOWN	COAD
ENSG00000259330	6.106044e+02	-2.390812e+00	2.007385e-01	-1.191008e+01	1.050000e-32	4.670000e-30	DOWN	STAD
ENSG00000259330	1.970577e+02	-2.132795e+00	2.254702e-01	-9.459318e+00	3.100000e-21	8.090000e-19	DOWN	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000259330	4.093870e-01	5.230072e-03	CHOL	6.766908e-03

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lncRNA-Protein interaction for INAFM2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for INAFM2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

TMEM119,FERMT2,SAMHD1,SIRPB2,KCNMB1,PLIN4,RAB20,IL6ST,CIRBP,ROM1,RNF166,RGS10,FKBP7,FOXF2,DPP7,CALHM6,CLEC10A,CENPB,PDK4,FBXL17,SERTAD3,FLT4,PIK3R3,COTL1,KCTD10,SPI1,PLPPR2,GIMAP7,HK3,PBX3,TSPAN3,SGCB,DOK1,PGF,KLHL42,HCK,MOB3A,SVBP,CLEC14A,GKAP1,SH3GLB1,TACR2,CD74,FAM104B,UQCR11,TRIP4,RGS19,LIX1L,LRIG1,RAB4B,DIPK2B,CA11,VKORC1,SEMA3G,CLIC2,PLTP,SLC22A17,SSU72,CHKB,MBD2,MFSD1,SGCA,FAM214B,CCDC9B,TREM2,HCFC2,C11orf96,RASIP1,KCNK6,FEZ1,LMO2,SLC7A7,MYZAP,NAPB,FGFR1,RNF11,CBX7,ANXA5,HEG1,FOXF1,TSPAN2,SAMSN1,LPCAT2,COPZ2,DIPK1A,ANKRD22,ITPKB,WWTR1,HLA-DMA,PPP1R14A,MAP1A,C22orf39,KCTD2,ESS2,LRRC32,NFAM1,DYNLT1,EMC7,LAMA4,DOK3,CMKLR1,GPR155,CHRDL1,RMDN3,CTSZ,GPR4,SLC2A6,FZD7,C2orf76,FBLN5,COX6C,KCTD12,PHC2,CDKN2D,STX6,NCALD,BTG2,CYRIA,AOAH,NDUFB1,PCDH12,SLC25A28,CDK17,CZIB,PILRA,GNA15,ENG,CHSY1,HSPB7,NACC2,PRXL2C,EPB41L3,MAF,FMNL3,EHD4,C4orf3,ERCC5,ARHGEF37,CLTB,OLFML2B,HCST,SAT1,PRADC1,RAB28,FCER1G,FAM172A,DENND5A,NCF4,FCGRT,PRUNE2,B4GALT2,PRICKLE2,CD63,ADAMTS1,LITAF,RDH10,PDZRN3,NEXN,UCP2,ATP6V0B,DNAJB5,GPSM3,LILRB2,WLS,UCHL3,PFDN2,LARP6,ACYP2,LAYN,C1QB,JPH2,PLD3,TMEM175,WARS1,GNPTG,LRRC25,IFNGR1,MTA2,C1QC,ADD1,SSC5D,PIP5K1C,GPM6B,POPDC2,CACNA1C,PI16,DACT3,S1PR1,EFEMP2,NPDC1,MTURN,AMIGO1,PKD1,CD93,OSBPL1A,FGR,PPM1L,CRYAB,CD34,LPAR1,SHISA4,HPGDS,GBGT1,SIGLEC9,HAND2,MRGPRF,NFIC,RNF135,ANKDD1A,PPP2R5B,RTF1,REV3L,RCN3,EVA1B,FILIP1L,TRPM2,PRIMA1,LMOD1,TYROBP,PFN1,HLX,MCAM,SLC15A3,RAB2B,ST3GAL3,TBX2,PHF11,SEMA6B,IL11RA,GLTP,PTPN6,SERF2,OLFML3,FOXP1,DKK3,PDLIM3,BCL7B,COMMD1,TP53INP2,ACTA2,CACNA1H,PRAM1,GIMAP8,NCKAP5L,RASSF3,PYURF,SCARF1,PARVG,SLC43A3,S100A4,KCNMA1,ATP6V1E1,ADPRH,ARRB2,BTBD6,ANXA6,LPP,ORAI3,CNPY4,CCDC80,LTBR,LDB2,DOK2,MYH11,UBE2L3,GLUL,DENND2A,TPM4,FBXO30,CAPZB,PER1,CASP1,VEGFC,CASQ2,MESD,S100A13,LAIR1,HAVCR2,CERS5,MFAP4,MS4A6A,ARHGEF25,TRIOBP,CLDN5,FAM107A,SIGLEC10,PSME2,UCHL1,LGI2,IFFO1,PDGFB,PYM1,ATP5F1E,BCL2,CLEC3B,MYO1F,TMX3,ZBTB4,NAGK,CCDC107,STARD13,FKBP5,COL6A2,IGFBP7,VWA1,TTC23,TFEB,PLEK,CD163,POMGNT1,UBE2J2,OLFML1,OSTM1,P3H3,TNS1,SPARCL1,KATNBL1,LSM10,ROR2,LHFPL2,MSR1,EML3,PPP1R12A,BNIP2,DMPK,CLK3,C14orf28,SECTM1,SH3BGRL,CSF1R,RSU1,ITGA1,PRKACA,PTP4A3,RGL1,SH2B3,CHST14,FYCO1,TGFBR3,ATP6V1H,SAV1,ST6GALNAC6,PTAFR,MGAT1,SIPA1,RBPMS,OLFML2A,RBMS3,BMPR1A,VSIG4,GDE1,ADAMTS2,BSG,BCL6B,RAMP2,CD248,S1PR2,SH3BGR,DLC1,KIAA0930,MYL6,KLHDC8B,CAVIN2,TMEM41B,ROBO4,SNX21,HIRA,SH3PXD2B,APOO,P3H2,COL14A1,GMFG,SLIT3,ATRAID,RCAN2,PECAM1,AOC3,GASK1B,S100B,SLC9A9,RNF25,ZFYVE21,SNTA1,GNB4,WBP1L,SEMA3F,LGMN,DYRK4,LYVE1,FBXO32,MOB3C,ZCCHC24,RASL12,GAS7,CACNA2D2,TXNDC11,SASH1,MOCS2,HSPB6,CDS2,UQCR10,VOPP1,RILP,CSPG4,PLSCR4,SLC16A11,DTX3,REEP1,PLCB2,TLE5,FCGBP,NDUFA5,NDUFA1,ABHD14A,ARHGAP31,MICOS10,ECSCR,C1orf54,GLT8D2,C3orf70,TWF2,TNS2,TMX4,ATP5PF,TMEM47,TAGLN,CSRP2,TINAGL1,PREX1,XPA,CRELD1,NDUFAF1,NRIP2,PTGES,STX2,DPT,FKBP2,IMMP1L,MYLK,GAL3ST4,LGALS3BP,KLF9,SOCS3,TMEM167B,TNFAIP2,ACKR1,PCSK1N,JAZF1,HSPB8,SERGEF,RHOQ,VASH1,PTN,MAMDC2,APOBR,PTGIS,HLA-DRB1,PMP22,CHCHD7,RBPMS2,ERH,LILRB4,REEP2,LHFPL6,RILPL1,SSPN,CALHM2,CD300C,PEDS1,FUCA1,LST1,MXRA7,DUSP1,DCHS1,ARHGAP4,ESAM,CSF3R,BCL2L2,PPP1R3C,RALGDS,HLA-DOA,RAB13,RGS5,DLG4,MINDY2,CPXM2,TM2D3,CHPF2,EMP3,HEXA,EMB,IGFBP4,VAMP2,OAZ2,ACTB,DTWD1,RHOG,EOGT,SYT11,RERG,SCARF2,ABCC9,ATP5MJ,ARHGAP45,MAFB,RNASEH2B,PLVAP,ITIH5,TADA2B,TMEM50A,NID1,STK17A,TXNL4A,APOL3,SOD2,HDAC7,RRAS,PRAF2,LAT2,EID1,GTF2A2,EFHD2,GAB3,LRRC29,LAPTM5,SORBS1,GGT5,NINJ1,AP3S2,MTFR1L,VEGFB,CRYZL1,OAZ1,SNX1,CST3,STAC3,ELL2,IRAG1,TSC22D3,TMEM230,SLCO2A1,DPYSL3,C1QA,RNASE1,NPTN,ITPR1,CREM,ABI3,CYBRD1,EMC9,RABGAP1,GAS6,EDNRB,HLA-E,FSTL1,JDP2,RPS27L,GEM,EMCN,TBXAS1,SEPTIN7,RPS19BP1,AP1B1,RBMS1,FPR1,PLEKHO1,TMEM11,DNASE2,COLEC12,GNG7,ANTXR2,CCPG1,C3AR1,C2CD2,PCMTD1,GNGT2,LGALS1,ADAP2,RCBTB2,FXYD5,TPM2,NFIL3,FUT11,F13A1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for INAFM2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

GGA3,SND1,ALDH5A1,PRIM1,SGO1,TRAP1,EIF3L,BPHL,HBP1,ECT2,C1orf112,HAUS4,RACGAP1,RNF123,CDK4,FLAD1,RNF40,STT3A,PC,MAIP1,CARM1,RAB29,EDC4,CDK2,CAD,CENPI,TMPO,FARSA,SMARCA4,RUSF1,RNF44,DPH2,EXO1,UTP4,DDX46,E2F8,CIP2A

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000259330	ENST00000560415	exon_skip_7558	chr1:81952986-81953025	-5.24	-0.1871	ADGRL2	ENST00000370717,ENST00000370728	In-frame
ENSG00000259330	ENST00000560415	exon_skip_335378	chr2:237751199-237751271	-7.60	-0.1462	LRRFIP1	ENST00000392000	In-frame
ENSG00000259330	ENST00000560415	exon_skip_368285	chr22:29329711-29329720	-2.80	-1.4000	AP1B1	ENST00000357586,ENST00000405198	In-frame
ENSG00000259330	ENST00000560415	exon_skip_436488	chr5:96726793-96726859	-7.40	-0.1574	CAST	ENST00000341926,ENST00000395813	In-frame
ENSG00000259330	ENST00000560415	exon_skip_33516	chr1:156938417-156938513	-12.63	-0.1885	ARHGEF11	ENST00000361409	In-frame
ENSG00000259330	ENST00000560415	exon_skip_48327	chr10:26771074-26771089	-5.79	-0.4454	ABI1	ENST00000376142	In-frame
ENSG00000259330	ENST00000560415	exon_skip_353171	chr20:58898940-58898985	-10.94	-0.2431	GNAS	ENST00000371085,ENST00000371100	In-frame
ENSG00000259330	ENST00000560415	exon_skip_353172	chr20:58898940-58898985	-10.94	-0.2431	GNAS	ENST00000371085,ENST00000371100	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000259330	ENST00000560415	exon_skip_294566	chr17:81683012-81683126	-12.35	-0.1199	ARL16	ENST00000397498	In-frame
ENSG00000259330	ENST00000560415	exon_skip_44998	chr10:110132304-110132400	-6.75	-0.6750	ADD3	ENST00000356080	In-frame
ENSG00000259330	ENST00000560415	exon_skip_139422	chr16:89114338-89114487	-17.55	-0.1245	ACSF3	ENST00000317447,ENST00000406948	Frame-shift
ENSG00000259330	ENST00000560415	exon_skip_462673	chr6:138926400-138926481	-8.67	-0.1845	REPS1	ENST00000450536	In-frame
ENSG00000259330	ENST00000560415	exon_skip_481821	chr8:22067084-22067159	-10.21	-0.1791	DMTN	ENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266	In-frame
ENSG00000259330	ENST00000560415	exon_skip_499771	chr9:128592982-128593042	-12.62	-0.9708	SPTAN1	ENST00000372731	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000259330	hsa-mir-192	ENST00000560415	chr15:40325463-40325568	189.00	-78.31	103	NA
ENSG00000259330	hsa-mir-192	ENST00000560415	chr15:40325626-40325750	157.00	-82.55	111	NA
ENSG00000259330	hsa-mir-192	ENST00000560415	chr15:40325367-40325464	148.00	-85.69	107	NA
ENSG00000259330	hsa-mir-194-1	ENST00000560415	chr15:40325618-40325703	185.00	-69.09	87	NA
ENSG00000259330	hsa-mir-194-1	ENST00000560415	chr15:40325430-40325515	162.00	-60.34	84	NA
ENSG00000259330	hsa-mir-194-1	ENST00000560415	chr15:40325273-40325361	157.00	-81.14	89	NA
ENSG00000259330	hsa-mir-194-1	ENST00000560415	chr15:40325708-40325787	152.00	-61.97	78	NA
ENSG00000259330	hsa-mir-194-2	ENST00000560415	chr15:40325446-40325522	172.00	-79.04	84	NA
ENSG00000259330	hsa-mir-194-2	ENST00000560415	chr15:40325340-40325423	162.00	-86.97	81	NA
ENSG00000259330	hsa-mir-194-2	ENST00000560415	chr15:40325225-40325322	157.00	-85.82	92	NA
ENSG00000259330	hsa-mir-194-2	ENST00000560415	chr15:40325598-40325688	152.00	-86.25	87	NA

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Variants for INAFM2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000259330	ENSG00000121577	POPDC2	ACC,CHOL,COAD,KIRC,PAAD,READ,SARC,STAD,TGCT,THCA,UCEC		COAD,READ,STAD
ENSG00000259330	ENSG00000129538	RNASE1	ACC,CHOL,GBM,LIHC,LUAD,LUSC,READ		READ
ENSG00000259330	ENSG00000132563	REEP2	ACC,KICH,PAAD,SARC,STAD,UVM		STAD
ENSG00000259330	ENSG00000136160	EDNRB	ACC,COAD,LUSC,READ,SARC,THCA		COAD,READ
ENSG00000259330	ENSG00000188549	CCDC9B	BLCA,BRCA,COAD,ESCA,GBM,HNSC,KICH,LGG,LUSC,READ,SARC,SKCM,STAD,THCA,THYM		ESCA,READ,STAD
ENSG00000259330	ENSG00000263155	MYZAP	BLCA,KICH,LUSC,READ,STAD		READ,STAD
ENSG00000259330	ENSG00000046653	GPM6B	BRCA,ESCA,STAD,THCA,UVM		ESCA,STAD
ENSG00000259330	ENSG00000065534	MYLK	BRCA,COAD,ESCA,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000105894	PTN	BRCA,COAD,DLBC,LIHC,PAAD,READ,STAD,UCS,UVM		COAD,READ,STAD
ENSG00000259330	ENSG00000107796	ACTA2	BRCA,CHOL,COAD,ESCA,KIRC,LIHC,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000135363	LMO2	BRCA,CHOL,COAD,GBM,KIRC,LGG,LIHC,PAAD,READ,THYM,UVM		COAD,READ
ENSG00000259330	ENSG00000145936	KCNMB1	BRCA,COAD,ESCA,KIRC,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000155760	FZD7	BRCA,CHOL,COAD,READ,THYM		READ
ENSG00000259330	ENSG00000249751	ECSCR	BRCA,CHOL,COAD,DLBC,ESCA,KIRC,KIRP,LIHC,PAAD,READ		READ
ENSG00000259330	ENSG00000137094	DNAJB5	CESC,CHOL,COAD,ESCA,PAAD,READ,SARC,STAD,THYM		COAD,READ,STAD
ENSG00000259330	ENSG00000163328	GPR155	CESC,PAAD,SARC,STAD,THCA		STAD
ENSG00000259330	ENSG00000174640	SLCO2A1	CESC,CHOL,COAD,PAAD,READ,THCA		COAD,READ
ENSG00000259330	ENSG00000255302	EID1	CESC,CHOL,COAD,ESCA,HNSC,PAAD,READ,SKCM,STAD,UCEC,UVM		READ
ENSG00000259330	ENSG00000023902	PLEKHO1	CHOL,COAD,DLBC,ESCA,KICH,KIRC,KIRP,LGG,LIHC,PAAD,READ,STAD,TGCT,UVM		COAD,READ,STAD
ENSG00000259330	ENSG00000058272	PPP1R12A	CHOL,COAD,ESCA,PAAD,READ,STAD		READ
ENSG00000259330	ENSG00000071967	CYBRD1	CHOL,COAD,ESCA,LIHC,LUSC,READ		COAD,ESCA,READ
ENSG00000259330	ENSG00000072952	IRAG1	CHOL,COAD,ESCA,KIRC,PAAD,READ,SARC,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000076706	MCAM	CHOL,COAD,ESCA,KIRC,LIHC,LUSC,PAAD,READ,SARC,STAD		STAD
ENSG00000259330	ENSG00000079308	TNS1	CHOL,COAD,ESCA,LIHC,LUAD,LUSC,PAAD,READ,SARC,STAD,TGCT,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000090530	P3H2	CHOL,COAD,LGG,READ,STAD,THYM		COAD,READ,STAD
ENSG00000259330	ENSG00000091986	CCDC80	CHOL,COAD,ESCA,KIRC,LIHC,READ,STAD		COAD,ESCA,READ
ENSG00000259330	ENSG00000092841	MYL6	CHOL,LIHC,PAAD,READ,SARC,STAD,UVM		READ,STAD
ENSG00000259330	ENSG00000100307	CBX7	CHOL,COAD,ESCA,LUSC,PAAD,READ,SARC,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000103710	RASL12	CHOL,COAD,ESCA,KIRC,LIHC,LUSC,READ,SARC,STAD,TGCT,UCEC		COAD,READ,STAD
ENSG00000259330	ENSG00000104490	NCALD	CHOL,ESCA,PAAD,STAD,UVM		STAD
ENSG00000259330	ENSG00000108823	SGCA	CHOL,ESCA,KIRC,LUSC,PAAD,READ,SARC,STAD,THYM		ESCA,READ,STAD
ENSG00000259330	ENSG00000109099	PMP22	CHOL,COAD,ESCA,LIHC,LUSC,READ,STAD,THYM		COAD,READ,STAD
ENSG00000259330	ENSG00000109846	CRYAB	CHOL,COAD,LGG,LIHC,READ,SARC,STAD,THYM		COAD,READ,STAD
ENSG00000259330	ENSG00000110811	P3H3	CHOL,LIHC,PCPG,THYM,UCS	PCPG
ENSG00000259330	ENSG00000111077	TNS2	CHOL,COAD,ESCA,LIHC,LUAD,LUSC,PAAD,READ,STAD,THYM,UVM		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000111727	HCFC2	CHOL,COAD,ESCA,PAAD,READ,STAD		COAD,READ
ENSG00000259330	ENSG00000111961	SASH1	CHOL,COAD,LIHC,PAAD,READ		READ
ENSG00000259330	ENSG00000113657	DPYSL3	CHOL,COAD,ESCA,KIRP,LIHC,READ,STAD,UVM		READ
ENSG00000259330	ENSG00000114450	GNB4	CHOL,KIRC,KIRP,LAML,LIHC,READ,STAD		READ
ENSG00000259330	ENSG00000116729	WLS	CHOL,COAD,ESCA,LGG,READ,STAD,THYM,UVM		ESCA,READ
ENSG00000259330	ENSG00000118292	C1orf54	CHOL,COAD,DLBC,ESCA,KIRC,KIRP,LGG,LIHC,READ,STAD,TGCT		READ
ENSG00000259330	ENSG00000118496	FBXO30	CHOL,COAD,ESCA,PAAD,READ,STAD,THCA		READ
ENSG00000259330	ENSG00000119630	PGF	CHOL,KICH,KIRP,LIHC,MESO,PCPG,THCA	PCPG
ENSG00000259330	ENSG00000121898	CPXM2	CHOL,COAD,ESCA,PAAD,READ,SARC,STAD		COAD,READ,STAD
ENSG00000259330	ENSG00000123091	RNF11	CHOL,COAD,LAML,READ,STAD		READ
ENSG00000259330	ENSG00000123096	SSPN	CHOL,COAD,ESCA,READ,STAD		COAD,READ,STAD
ENSG00000259330	ENSG00000124212	PTGIS	CHOL,COAD,ESCA,READ,STAD,UCEC		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000124491	F13A1	CHOL,COAD,ESCA,GBM,LIHC,READ		COAD,READ
ENSG00000259330	ENSG00000126458	RRAS	CHOL,DLBC,LGG,LIHC,LUSC,PCPG,SARC,STAD,TGCT		STAD
ENSG00000259330	ENSG00000129355	CDKN2D	CHOL,KICH,KIRC,KIRP,LIHC,PCPG,UVM	PCPG
ENSG00000259330	ENSG00000131171	SH3BGRL	CHOL,COAD,ESCA,LIHC,LUSC,READ,SARC,STAD,TGCT,UCEC,UVM		COAD,READ,STAD
ENSG00000259330	ENSG00000132718	SYT11	CHOL,COAD,ESCA,PAAD,READ,SARC,STAD,UVM		COAD,READ
ENSG00000259330	ENSG00000133392	MYH11	CHOL,COAD,ESCA,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000134198	TSPAN2	CHOL,COAD,ESCA,HNSC,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000139433	GLTP	CHOL,COAD,LIHC,READ,UCS,UVM		COAD,READ
ENSG00000259330	ENSG00000142227	EMP3	CHOL,DLBC,KIRP,LIHC,LUSC,PCPG,STAD,TGCT		STAD
ENSG00000259330	ENSG00000143772	ITPKB	CHOL,COAD,ESCA,LIHC,PAAD,READ,STAD		READ,STAD
ENSG00000259330	ENSG00000145685	LHFPL2	CHOL,GBM,KIRP,LGG,LIHC,READ,UVM		READ
ENSG00000259330	ENSG00000146966	DENND2A	CHOL,ESCA,PAAD,READ,STAD		READ,STAD
ENSG00000259330	ENSG00000147027	TMEM47	CHOL,COAD,ESCA,KIRC,LUSC,READ,SARC,STAD,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000148908	RGS10	CHOL,COAD,GBM,KIRP,LGG,LIHC,READ,TGCT		READ
ENSG00000259330	ENSG00000149591	TAGLN	CHOL,COAD,ESCA,HNSC,KIRC,LIHC,PAAD,READ,SARC,STAD,TGCT,UVM		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000150995	ITPR1	CHOL,COAD,ESCA,LUSC,READ,SARC,STAD,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000152583	SPARCL1	CHOL,COAD,ESCA,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000153179	RASSF3	CHOL,COAD,KIRC,KIRP,READ,SARC,STAD		READ
ENSG00000259330	ENSG00000154553	PDLIM3	CHOL,COAD,ESCA,KIRC,LIHC,PAAD,READ,SARC,STAD,TGCT,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000155307	SAMSN1	CHOL,GBM,KIRP,LGG,LIHC,MESO,READ		READ
ENSG00000259330	ENSG00000155962	CLIC2	CHOL,COAD,LGG,LIHC,READ,TGCT		COAD,READ
ENSG00000259330	ENSG00000156642	NPTN	CHOL,COAD,READ,SARC,STAD,UVM		READ
ENSG00000259330	ENSG00000156804	FBXO32	CHOL,COAD,ESCA,READ,SARC,STAD,TGCT		COAD,READ,STAD
ENSG00000259330	ENSG00000157514	TSC22D3	CHOL,COAD,ESCA,READ,STAD,TGCT,UVM		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000159388	BTG2	CHOL,ESCA,READ,STAD,UVM		ESCA,STAD
ENSG00000259330	ENSG00000159884	CCDC107	CHOL,SARC,STAD,THCA,UVM		STAD
ENSG00000259330	ENSG00000160307	S100B	CHOL,COAD,DLBC,HNSC,READ,SARC,STAD		COAD,READ,STAD
ENSG00000259330	ENSG00000160408	ST6GALNAC6	CHOL,ESCA,KIRP,PAAD,READ,STAD		READ,STAD
ENSG00000259330	ENSG00000162614	NEXN	CHOL,COAD,ESCA,KIRC,LUSC,PAAD,READ,SARC,STAD,TGCT,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000163069	SGCB	CHOL,COAD,ESCA,READ,STAD,UVM		READ
ENSG00000259330	ENSG00000163297	ANTXR2	CHOL,COAD,ESCA,LUSC,READ,STAD,TGCT		COAD,READ,STAD
ENSG00000259330	ENSG00000163431	LMOD1	CHOL,COAD,ESCA,KIRC,LIHC,LUSC,PAAD,READ,SARC,STAD,TGCT,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000163820	FYCO1	CHOL,COAD,ESCA,LUSC,READ,STAD,TGCT		ESCA,READ,STAD
ENSG00000259330	ENSG00000164096	C4orf3	CHOL,LAML,READ,SARC,STAD		STAD
ENSG00000259330	ENSG00000164949	GEM	CHOL,COAD,ESCA,KIRC,LGG,LIHC,READ,STAD,UVM		READ,STAD
ENSG00000259330	ENSG00000165424	ZCCHC24	CHOL,COAD,ESCA,KIRC,KIRP,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000166341	DCHS1	CHOL,COAD,ESCA,KIRC,STAD		ESCA
ENSG00000259330	ENSG00000167641	PPP1R14A	CHOL,COAD,ESCA,KIRC,LIHC,MESO,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000168386	FILIP1L	CHOL,COAD,ESCA,KIRC,LGG,LIHC,LUSC,READ,STAD		ESCA
ENSG00000259330	ENSG00000171115	GIMAP8	CHOL,COAD,ESCA,GBM,LIHC,READ,UVM		COAD,READ
ENSG00000259330	ENSG00000172348	RCAN2	CHOL,COAD,ESCA,LIHC,PAAD,READ,STAD,THCA,UVM		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000174600	CMKLR1	CHOL,DLBC,GBM,KIRP,LIHC,LUSC,READ,TGCT		READ
ENSG00000259330	ENSG00000176533	GNG7	CHOL,ESCA,LAML,LUSC,STAD,TGCT,THCA,UCS		ESCA,STAD
ENSG00000259330	ENSG00000178498	DTX3	CHOL,COAD,LIHC,PAAD,READ,STAD,THCA		READ,STAD
ENSG00000259330	ENSG00000178695	KCTD12	CHOL,COAD,GBM,LIHC,LUSC,MESO,READ,UVM		COAD,READ
ENSG00000259330	ENSG00000179163	FUCA1	CHOL,GBM,LGG,READ,THYM		READ
ENSG00000259330	ENSG00000182534	MXRA7	CHOL,COAD,LIHC,PAAD,READ,SARC,STAD,UVM		COAD,READ,STAD
ENSG00000259330	ENSG00000185585	OLFML2A	CHOL,COAD,KIRC,READ,STAD		COAD,READ
ENSG00000259330	ENSG00000185909	KLHDC8B	CHOL,COAD,DLBC,KIRC,KIRP,LIHC,PAAD,READ,STAD,TGCT,THCA		COAD,READ,STAD
ENSG00000259330	ENSG00000187479	C11orf96	CHOL,ESCA,KIRC,SARC,STAD,TGCT,UCEC		ESCA,STAD
ENSG00000259330	ENSG00000189067	LITAF	CHOL,DLBC,GBM,LUSC,READ,TGCT,THYM		READ
ENSG00000259330	ENSG00000198121	LPAR1	CHOL,COAD,DLBC,READ,STAD,THYM		COAD,READ,STAD
ENSG00000259330	ENSG00000198467	TPM2	CHOL,COAD,ESCA,KIRC,KIRP,LIHC,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000204381	LAYN	CHOL,COAD,PAAD,READ,STAD,THCA,THYM		READ,STAD
ENSG00000259330	ENSG00000205758	CRYZL1	CHOL,ESCA,READ,SARC,STAD		READ
ENSG00000259330	ENSG00000213088	ACKR1	CHOL,COAD,ESCA,KIRC,KIRP,LUSC,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000220205	VAMP2	CHOL,COAD,ESCA,LAML,LIHC,LUAD,LUSC,PAAD,READ,STAD,THYM,UCEC		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000240771	ARHGEF25	CHOL,COAD,ESCA,KIRC,LIHC,PAAD,READ,STAD,UCEC,UVM		COAD,READ,STAD
ENSG00000259330	ENSG00000243279	PRAF2	CHOL,KIRC,LIHC,PAAD,PCPG,UVM	PCPG
ENSG00000259330	ENSG00000271601	LIX1L	CHOL,COAD,ESCA,KIRC,LAML,READ,STAD,THCA,UVM		READ
ENSG00000259330	ENSG00000004776	HSPB6	COAD,ESCA,KIRC,LIHC,LUSC,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000004799	PDK4	COAD,ESCA,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000005243	COPZ2	COAD,DLBC,LIHC,READ,STAD,THCA		READ,STAD
ENSG00000259330	ENSG00000007237	GAS7	COAD,DLBC,ESCA,KIRP,LUSC,READ,STAD		COAD,READ
ENSG00000259330	ENSG00000018408	WWTR1	COAD,ESCA,LGG,READ,STAD,UVM		COAD,READ
ENSG00000259330	ENSG00000063180	CA11	COAD,DLBC,PAAD,READ,STAD		READ,STAD
ENSG00000259330	ENSG00000069702	TGFBR3	COAD,ESCA,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000073712	FERMT2	COAD,ESCA,LUSC,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000075073	TACR2	COAD,ESCA,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000077782	FGFR1	COAD,LIHC,PAAD,READ,STAD,UVM		COAD,READ,STAD
ENSG00000259330	ENSG00000078804	TP53INP2	COAD,DLBC,GBM,PAAD,READ,SARC,THCA,UVM		COAD,READ
ENSG00000259330	ENSG00000082397	EPB41L3	COAD,MESO,PAAD,READ,TGCT		COAD,READ
ENSG00000259330	ENSG00000095637	SORBS1	COAD,ESCA,PAAD,READ,SARC,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000096060	FKBP5	COAD,ESCA,READ,STAD,UVM		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000101938	CHRDL1	COAD,ESCA,LUSC,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000104936	DMPK	COAD,ESCA,KICH,LIHC,PAAD,READ,SARC,STAD,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000106772	PRUNE2	COAD,ESCA,PAAD,READ,SARC,STAD,THYM		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000107779	BMPR1A	COAD,ESCA,PAAD,READ,STAD,THCA,THYM,UVM		READ
ENSG00000259330	ENSG00000114698	PLSCR4	COAD,READ,STAD,THCA,UCEC		COAD,READ
ENSG00000259330	ENSG00000116774	OLFML3	COAD,ESCA,GBM,LGG,LIHC,STAD		COAD,STAD
ENSG00000259330	ENSG00000117640	MTFR1L	COAD,ESCA,LGG,PAAD,READ,STAD,THCA,UCEC		ESCA,STAD
ENSG00000259330	ENSG00000118729	CASQ2	COAD,ESCA,READ,SARC,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000119938	PPP1R3C	COAD,READ,STAD,TGCT,UCEC		COAD,READ,STAD
ENSG00000259330	ENSG00000121440	PDZRN3	COAD,ESCA,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000126091	ST3GAL3	COAD,PAAD,READ,STAD,THYM		READ,STAD
ENSG00000259330	ENSG00000128609	NDUFA5	COAD,PAAD,READ,THCA,UCEC,UCS,UVM		READ
ENSG00000259330	ENSG00000131471	AOC3	COAD,ESCA,KIRC,LIHC,LUSC,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000132514	CLEC10A	COAD,DLBC,LIHC,READ,TGCT		COAD,READ
ENSG00000259330	ENSG00000133121	STARD13	COAD,ESCA,LUSC,PAAD,READ,STAD,THCA		ESCA
ENSG00000259330	ENSG00000133800	LYVE1	COAD,ESCA,GBM,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000134352	IL6ST	COAD,ESCA,LUSC,READ,STAD,UVM		COAD,ESCA,READ
ENSG00000259330	ENSG00000134533	RERG	COAD,ESCA,READ,SARC,STAD		COAD,READ,STAD
ENSG00000259330	ENSG00000137070	IL11RA	COAD,ESCA,PAAD,READ,STAD,THCA		COAD,READ,STAD
ENSG00000259330	ENSG00000140092	FBLN5	COAD,ESCA,GBM,LGG,LUSC,READ,UCS		COAD,ESCA,READ
ENSG00000259330	ENSG00000141447	OSBPL1A	COAD,READ,STAD,THCA,UVM		COAD,READ,STAD
ENSG00000259330	ENSG00000143196	DPT	COAD,ESCA,PAAD,READ,STAD,UCEC		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000143344	RGL1	COAD,ESCA,LIHC,LUSC,READ,UVM		COAD,READ
ENSG00000259330	ENSG00000145012	LPP	COAD,ESCA,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000149596	JPH2	COAD,ESCA,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000152137	HSPB8	COAD,ESCA,LIHC,PAAD,READ,SARC,STAD,TGCT,UVM		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000154277	UCHL1	COAD,LIHC,PAAD,READ,UVM		COAD,READ
ENSG00000259330	ENSG00000154734	ADAMTS1	COAD,ESCA,KIRC,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000156113	KCNMA1	COAD,DLBC,ESCA,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000158270	COLEC12	COAD,ESCA,LGG,LUSC,READ,STAD		COAD,READ,STAD
ENSG00000259330	ENSG00000163590	PPM1L	COAD,KICH,READ,STAD,THCA		READ,STAD
ENSG00000259330	ENSG00000163815	CLEC3B	COAD,ESCA,LIHC,LUSC,PAAD,READ,STAD,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000164035	EMCN	COAD,ESCA,LUSC,PAAD,READ,STAD,THCA		COAD,READ
ENSG00000259330	ENSG00000164530	PI16	COAD,ESCA,READ,STAD,UCEC		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000164741	DLC1	COAD,ESCA,KIRC,READ,STAD		ESCA,READ,STAD
ENSG00000259330	ENSG00000166482	MFAP4	COAD,ESCA,LIHC,LUSC,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000166831	RBPMS2	COAD,ESCA,PAAD,READ,STAD,THCA,UCS		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000166963	MAP1A	COAD,ESCA,PAAD,READ,STAD,UVM		COAD,READ,STAD
ENSG00000259330	ENSG00000167676	PLIN4	COAD,ESCA,LIHC,PAAD,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000168497	CAVIN2	COAD,ESCA,PAAD,READ,SARC,STAD,TGCT,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000169071	ROR2	COAD,ESCA,PAAD,READ,STAD,THYM		COAD,READ,STAD
ENSG00000259330	ENSG00000170989	S1PR1	COAD,ESCA,LUSC,READ,UVM		COAD,ESCA,READ
ENSG00000259330	ENSG00000171791	BCL2	COAD,MESO,READ,STAD,THCA		COAD,READ,STAD
ENSG00000259330	ENSG00000172935	MRGPRF	COAD,ESCA,LGG,PAAD,READ,SARC,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000173546	CSPG4	COAD,KIRC,PAAD,READ,SARC,STAD,UVM		COAD,READ,STAD
ENSG00000259330	ENSG00000173641	HSPB7	COAD,ESCA,PAAD,READ,STAD,TGCT		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000179144	GIMAP7	COAD,ESCA,GBM,KIRC,KIRP,LIHC,READ		COAD,READ
ENSG00000259330	ENSG00000179954	SSC5D	COAD,ESCA,KIRC,LUSC,READ,STAD,UCS		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000180354	MTURN	COAD,ESCA,LIHC,PAAD,READ,STAD,THCA		ESCA,READ,STAD
ENSG00000259330	ENSG00000183111	ARHGEF37	COAD,PAAD,READ,SARC,STAD		COAD,READ,STAD
ENSG00000259330	ENSG00000184347	SLIT3	COAD,ESCA,KIRC,READ,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000185437	SH3BGR	COAD,ESCA,PAAD,READ,STAD,THCA,UVM		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000187068	C3orf70	COAD,ESCA,KIRC,PAAD,READ,SARC,STAD		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000187955	COL14A1	COAD,ESCA,KIRC,LIHC,READ		COAD,ESCA,READ
ENSG00000259330	ENSG00000196557	CACNA1H	COAD,ESCA,MESO,PAAD,READ,STAD,THCA		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000197380	DACT3	COAD,ESCA,KIRC,LUSC,PAAD,READ,SARC,STAD,THYM,UCEC		COAD,ESCA,READ,STAD
ENSG00000259330	ENSG00000197872	CYRIA	COAD,ESCA,KIRC,KIRP,LIHC,LUSC,READ,STAD,THCA		COAD,READ
ENSG00000259330	ENSG00000213949	ITGA1	COAD,ESCA,KIRC,LUSC,PAAD,READ,SARC,STAD,THCA		READ
ENSG00000259330	ENSG00000182578	CSF1R	DLBC,GBM,KIRP,LGG,LIHC,READ,UVM		READ
ENSG00000259330	ENSG00000260916	CCPG1	DLBC,ESCA,HNSC,READ,THYM		ESCA
ENSG00000259330	ENSG00000069431	ABCC9	ESCA,KIRC,LUSC,PAAD,STAD		STAD
ENSG00000259330	ENSG00000163637	PRICKLE2	ESCA,LUSC,PAAD,STAD,THCA,THYM		ESCA,STAD
ENSG00000259330	ENSG00000168309	FAM107A	ESCA,PAAD,STAD,THYM,UVM		ESCA,STAD
ENSG00000259330	ENSG00000175785	PRIMA1	ESCA,PAAD,STAD,THYM,UVM		ESCA,STAD
ENSG00000259330	ENSG00000110077	MS4A6A	GBM,KIRP,LGG,LIHC,READ,UVM		READ
ENSG00000259330	ENSG00000120129	DUSP1	GBM,READ,STAD,THCA,UCEC		READ,STAD
ENSG00000259330	ENSG00000175183	CSRP2	GBM,PAAD,SARC,STAD,THCA		STAD
ENSG00000259330	ENSG00000184557	SOCS3	GBM,KIRC,KIRP,LGG,STAD,UVM		STAD
ENSG00000259330	ENSG00000101400	SNTA1	KICH,LIHC,PAAD,SARC,STAD,THCA,THYM		STAD
ENSG00000259330	ENSG00000151067	CACNA1C	KIRC,PAAD,SARC,STAD,THYM		STAD
ENSG00000259330	ENSG00000102109	PCSK1N	LIHC,PAAD,PCPG,UCS,UVM	PCPG

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000259330	ENST00000560415	MAIP1	ENSG00000162972	ENST00000435773	-0.2914	97	-	PCPG
ENSG00000259330	ENST00000560415	TRAP1	ENSG00000126602	ENST00000246957	-0.1396	322	COAD,READ	-
ENSG00000259330	ENST00000560415	TRAP1	ENSG00000126602	ENST00000575671	-0.1396	322	COAD,READ	-
ENSG00000259330	ENST00000560415	TRAP1	ENSG00000126602	ENST00000538171	-0.1396	322	COAD,READ	-
ENSG00000259330	ENST00000560415	SND1	ENSG00000197157	ENST00000354725	-0.1502	1	READ	-
ENSG00000259330	ENST00000560415	CAD	ENSG00000084774	ENST00000403525	-0.1121	132	COAD,STAD,READ	-
ENSG00000259330	ENST00000560415	CAD	ENSG00000084774	ENST00000428460	-0.2025	138	COAD,STAD,READ	-
ENSG00000259330	ENST00000560415	DPH2	ENSG00000132768	ENST00000532140	-0.1063	39	READ	PCPG
ENSG00000259330	ENST00000560415	CDK4	ENSG00000135446	ENST00000549606	-0.1528	146	ESCA,COAD,READ	-
ENSG00000259330	ENST00000560415	CDK4	ENSG00000135446	ENST00000550419	-0.1239	67	ESCA,COAD,READ	-
ENSG00000259330	ENST00000560415	EXO1	ENSG00000174371	ENST00000521202	-0.2550	101	ESCA,COAD,STAD,READ	-
ENSG00000259330	ENST00000560415	UTP4	ENSG00000141076	ENST00000314423	-0.1349	138	COAD,READ	-
ENSG00000259330	ENST00000560415	UTP4	ENSG00000141076	ENST00000562237	-0.1746	145	COAD,READ	-
ENSG00000259330	ENST00000560415	UTP4	ENSG00000141076	ENST00000352319	-0.1746	145	COAD,READ	-
ENSG00000259330	ENST00000560415	UTP4	ENSG00000141076	ENST00000567500	-0.1006	362	COAD,READ	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000259330	INAFM2,hsa-mir-194-2,NXN	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-194-2,MRC2	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-194-2,CALU	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-194-2,P3H1	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-194-2,TGFB3	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-194-2,CALM2	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-194-2,ARHGEF25	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-192,MRC2	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-192,CALU	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-192,PTPN12	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-192,BPGM	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-192,ARHGEF25	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-192,TMEM127	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-192,CAMSAP2	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-194-1,CALU	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-194-1,ARHGEF25	CHOL,UVM,READ,KIRP,LIHC
ENSG00000259330	INAFM2,hsa-mir-194-1,CALM2	CHOL,UVM,READ,KIRP,LIHC

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000259330.1	ENST00000560415.1	117	86	439

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential