 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | NUBPL,AKR7A2,L2HGDH,PRKAR2A,DHDDS,GCDH,KIF2A,LZIC,PSMD2,HBP1,TM7SF3,HSPA8,LARS2,UHRF1BP1L,KIF1B,ACADM,PC,FOXN3,GNL3L,MID2,DHRS4,EIF4G1,IQGAP2,TMLHE,PCK2,UBE4A,AZI2,ASL,MCFD2,NOMO2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000259250 | ENST00000560594 | exon_skip_379758 | chr3:180975312-180975404 | -9.98 | -0.2559 | FXR1 | ENST00000357559 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000259250 | ENST00000560594 | exon_skip_41813 | chr10:68337857-68337996 | -13.99 | -0.1110 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000259250 | ENST00000560594 | exon_skip_53559 | chr10:101793912-101793998 | -8.53 | -0.1028 | OGA | ENST00000361464 | Frame-shift | | ENSG00000259250 | ENST00000560594 | exon_skip_353131 | chr20:58669290-58669453 | -14.61 | -0.1340 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000259250 | ENST00000560594 | exon_skip_382458 | chr3:38131595-38131638 | -8.03 | -0.2294 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000259250 | ENST00000560594 | exon_skip_436035 | chr5:79656957-79657001 | -8.00 | -0.5333 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000259250 | ENST00000560594 | exon_skip_470226 | chr7:103307595-103307708 | -11.08 | -0.1065 | PMPCB | ENST00000249269 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000259250 | ENST00000560594 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.2614 | 111 | - | CHOL,KIRP | | ENSG00000259250 | ENST00000560594 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.1168 | 1 | - | CHOL,KIRP | | ENSG00000259250 | ENST00000560594 | PCK2 | ENSG00000100889 | ENST00000545054 | -0.1785 | 113 | - | CHOL,KIRP | | ENSG00000259250 | ENST00000560594 | GCDH | ENSG00000105607 | ENST00000590445 | -0.1830 | 1 | - | CHOL | | ENSG00000259250 | ENST00000560594 | GCDH | ENSG00000105607 | ENST00000591050 | -0.1580 | 1 | - | CHOL | | ENSG00000259250 | ENST00000560594 | ACADM | ENSG00000117054 | ENST00000420607 | -0.1477 | 102 | - | CHOL,KIRP | | ENSG00000259250 | ENST00000560594 | ACADM | ENSG00000117054 | ENST00000528016 | -0.1081 | 1 | - | CHOL,KIRP | | ENSG00000259250 | ENST00000560594 | ASL | ENSG00000126522 | ENST00000304874 | -0.1320 | 342 | - | CHOL | | ENSG00000259250 | ENST00000560594 | ASL | ENSG00000126522 | ENST00000380839 | -0.1361 | 1 | - | CHOL | | ENSG00000259250 | ENST00000560594 | ASL | ENSG00000126522 | ENST00000395332 | -0.8800 | 385 | - | CHOL | | ENSG00000259250 | ENST00000560594 | ASL | ENSG00000126522 | ENST00000395331 | -0.8400 | 79 | - | CHOL | | ENSG00000259250 | ENST00000560594 | IQGAP2 | ENSG00000145703 | ENST00000513534 | -0.1146 | 1 | - | CHOL,KIRP | | ENSG00000259250 | ENST00000560594 | DHRS4 | ENSG00000157326 | ENST00000397075 | -0.1555 | 75 | - | CHOL,KIRP | | ENSG00000259250 | ENST00000560594 | PC | ENSG00000173599 | ENST00000524491 | -0.4139 | 383 | - | CHOL,KIRP |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000259250.1 | ENST00000560594.1 | 156 | 1698 | 1228 |
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