 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | GART,KRCC1,RNF141,COPS2,HELQ,TINF2,ERI2,BRD7,CENPK,WDR89,RBM7,VAMP4,TANK,TXNDC16,FBXL4,DMTF1,HSPA14,DCK,SENP1,ZNF24,PIGX,METTL5,SLC25A40,EFS,KLHL28,SNAPC1,FAM200A,HIRIP3,LBR,FAM133B,DEK,ZBED5,GNPAT,GMPR2,ACTR6,KNTC1,MEX3C,CREB1,SUDS3,SMIM15,ADSS2,MIDN,EXOC8,FBXO34,STRN3,DAXX,SIAH1,SCYL3,FAM220A,CBX3,SKAP2,CLK2,MYEF2,PPIL4,ARID4B,BLZF1,FANCD2,PTAR1,METTL17,TOP2B,RPAP3,MBD2,OSGEP,ZBTB6,UBLCP1,GABPB1,H3-3A,BTF3,BCL10,RBBP4,TMEM243,SYPL1,VTI1A,MIER1,RSRC2,NPAT,HERPUD2,AP1G1,KPNA4,C4orf46,EIF2A,RDH14,NIP7,ZFP62,MIS18BP1,SOCS4,SLC35A3,PAIP1,CHIC1,BRAF,YTHDC1,TOPBP1,C18orf21,SEC23A,BAZ1A,ORC2,SRSF2,POGLUT1,BTF3L4,AIDA,MTMR2,SKIL,NT5C3A,USP33,UBXN2A,C6orf62,TASOR,PPP4R2,MOAP1,SMARCAD1,STX6,KHNYN,STAG2,CHEK1,SLC30A6,XPO1,METTL4,CIR1,NFYB,MBTD1,SP3,SEPSECS,COMMD8,ANKRD13C,VCPKMT,DENR,PALB2,ABCE1,EAPP,BUD13,PGGT1B,SHOC2,GCA,MAX,JKAMP,PEX11B,ISCA2,AMMECR1L,MAPK1IP1L,TMEM168,RAB28,RTRAF,CEP20,ADO,FAM172A,PDCD10,STK17B,NUP54,CDK13,LCORL,ACTR3,CEP57,PAWR,PPWD1,DBF4,RSBN1,PRPF40A,MORF4L1,RBM27,EIF2AK3,FASTKD1,SPATA5L1,ICE2,COX16,ASTE1,CNOT6L,CASP2,IPMK,COG5,METTL21A,EXD2,GCFC2,VPS50,TRNT1,ACAP2,MTA2,CHD8,KIAA1143,EZH2,DENND6A,TMED8,HDGF,AP5M1,PDCD6IP,RC3H1,MZT1,UBE2J1,TRIM13,RAB14,VAPA,ANAPC13,MEPCE,TMEM251,PPM1B,MED6,SLC25A24,IFT80,PELI1,DDX20,HMGB1,RFC4,LIN54,METTL23,DDX6,KIAA0586,TSN,CABLES2,PATZ1,ZBTB2,IWS1,ZC3H8,THAP1,TRAPPC6B,RAB2B,PAXBP1,HEATR5A,ZNF48,MASTL,KCTD18,GTF2A1,WDR76,NUBPL,COP1,LRR1,TOX4,G2E3,NVL,ATG14,CIAO2A,BAG5,MYNN,SUMO2,METTL14,VPS4B,RPE,DAD1,ZNF720,CBLL1,TMPO,BTBD7,GPBP1,MRE11,PSMG2,EHMT1,TRMT13,TXNDC9,CDK19,EDEM3,CCDC82,ARHGAP12,ARID4A,ARPP19,SYF2,SNX6,PAXIP1,UEVLD,ANP32E,NSL1,EPM2AIP1,FKBP3,TYW1,RBM8A,PHF5A,YY1AP1,NOC3L,PCGF6,SFPQ,TCEAL8,GALC,ATAD2B,CUL4B,GOPC,TBC1D15,ABCB10,DUT,MED17,EIF3J,ESCO1,CEP63,RALGAPA1,TMX3,XRCC5,UBE2B,ANGEL2,PSMA2,STMP1,N4BP2,RBM23,DARS1,TTC5,DTD2,SMARCE1,KATNBL1,CCDC174,PIP4P1,C7orf26,PIGC,C14orf119,GABPA,MIS18A,AFTPH,GATAD1,PBRM1,BNIP2,MARCHF7,PPM1A,C14orf28,PPP4R3B,CNOT4,TIMM9,TFAP4,LSM5,TDP1,CCNT2,HECTD1,NRAS,PHTF2,ZFP91,CTPS2,CSTF3,TRAPPC11,NAPEPLD,C5orf22,PURB,RBM25,C1orf131,RO60,JOSD1,MLH3,SP4,SPRTN,MRPL50,MBIP,ARL5A,LIN9,PRPF39,ETNK1,SMC5,EPC1,SNW1,ZNF22,MAP4K5,GORAB,TMEM128,CNOT11,CENPC,ABHD13,TLK1,GMCL1,C10orf88,SUMO1,CCDC90B,C2orf49,PLEKHA3,TMEM60,RBM45,RBL1,ACTR1B,PMS1,HOMEZ,APEX1,DENND1B,GEMIN2,VIPAS39,DCUN1D1,ABI1,TIA1,PPP4R3A,SAAL1,FCF1,INTS9,ZNF3,CERKL,C3orf38,ZCCHC10,PPP2R5E,CWF19L2,ELF2,NDUFA5,CNIH1,NUDCD2,PCNA,PNN,LUC7L2,CCAR1,ERCC8,GSPT1,ARHGAP5,KATNA1,C14orf93,CASP8,EIF1B,ALKBH1,SLC10A7,BROX,CRTC2,THTPA,SOS1,RUFY2,RAD17,PDCL,IMMP1L,PRMT5,PELI2,FPGT,DNAAF2,MPHOSPH10,MOB1A,KIF5B,TAF9B,INTS14,SCFD1,MSL2,POT1,EXOC5,ZCCHC8,C7orf31,TBL1XR1,RRNAD1,BLOC1S6,GNA13,KAT8,PDS5A,AP4S1,ERH,RABGAP1L,PPP1CC,HAUS8,MAP3K2,C2CD5,ANKIB1,CAAP1,PRKRA,PTEN,BCLAF1,NUP42,PAN3,LARP7,PIGM,CWC22,DDX59,NUMB,BCAP29,RICTOR,SNX16,OSGEPL1,NFKBIA,S100PBP,METTL25,MTPN,SOS2,TOGARAM1,FAM76B,SUPT16H,RBMX,RB1,FBXO33,ARPC5,RNASEH2B,PRIMPOL,WDHD1,C2orf69,TMEM50A,HMGB2,WDR20,DYNC1LI1,DHX15,GGPS1,PUS7,PRPF4,SENP7,AQR,UBTD2,RSBN1L,MCM6,REC8,CHMP2B,DYRK1A,CTDSPL2,GNPDA2,SDR39U1,GCC1,LIN52,SMC6,COIL,HAUS4,PHIP,CPSF2,USP21,DEDD,TCEA1,CSGALNACT2,HP1BP3,NAF1,CBWD2,EMC9,C1D,TPRKB,CPSF3,CHURC1,RBM48,TSNAX,PUM2,MARCHF5,SEPTIN7,USP3,ANP32A,SFMBT1,CEP162,SLC30A9,POLD3,ETS1,CCP110,WDR33,WDR26,NEDD1,TRA2B,MDP1,PIAS2,OXA1L,NSUN3,NGLY1,HSPB11,PDCD7,CCDC112,ASB8,PRPF4B,TRAPPC2,KBTBD2,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | AP2A1,CLPTM1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000258738 | ENSG00000128513 | POT1 | BLCA,CHOL,COAD,GBM,HNSC,SARC,UCEC | GBM | | | ENSG00000258738 | ENSG00000198604 | BAZ1A | BRCA,CESC,CHOL,COAD,ESCA,GBM,HNSC,KIRC,LGG,LUAD,LUSC,OV,PAAD,READ,SARC,THYM,UCEC,UCS | GBM | | | ENSG00000258738 | ENSG00000184445 | KNTC1 | CESC,CHOL,GBM,HNSC,LGG,UCS | GBM | | | ENSG00000258738 | ENSG00000198554 | WDHD1 | CESC,CHOL,GBM,LGG,READ,THYM,UCEC,UCS | GBM | | | ENSG00000258738 | ENSG00000006634 | DBF4 | CHOL,GBM,HNSC,LGG,PAAD,THYM,UCEC | GBM | | | ENSG00000258738 | ENSG00000047230 | CTPS2 | CHOL,GBM,HNSC,LGG,PAAD | GBM | | | ENSG00000258738 | ENSG00000076003 | MCM6 | CHOL,GBM,LGG,THYM,UCS | GBM | | | ENSG00000258738 | ENSG00000080839 | RBL1 | CHOL,GBM,LGG,THYM,UCEC | GBM | | | ENSG00000258738 | ENSG00000100632 | ERH | CHOL,GBM,LAML,LGG,PAAD,THYM | GBM | | | ENSG00000258738 | ENSG00000106144 | CASP2 | CHOL,GBM,HNSC,LGG,PAAD,SARC | GBM | | | ENSG00000258738 | ENSG00000120802 | TMPO | CHOL,GBM,HNSC,KIRC,LGG,PAAD | GBM | | | ENSG00000258738 | ENSG00000131351 | HAUS8 | CHOL,GBM,LGG,PAAD,THYM | GBM | | | ENSG00000258738 | ENSG00000139350 | NEDD1 | CHOL,GBM,KIRC,SARC,UCEC | GBM | | | ENSG00000258738 | ENSG00000143815 | LBR | CHOL,COAD,GBM,KIRC,LGG,PAAD,UCEC | GBM | | | ENSG00000258738 | ENSG00000149554 | CHEK1 | CHOL,GBM,LGG,SARC,THYM,UCEC,UCS | GBM | | | ENSG00000258738 | ENSG00000159131 | GART | CHOL,GBM,LGG,PAAD,THYM | GBM | | | ENSG00000258738 | ENSG00000163918 | RFC4 | CHOL,GBM,LGG,SARC,THYM | GBM | | | ENSG00000258738 | ENSG00000164104 | HMGB2 | CHOL,GBM,HNSC,PAAD,SARC,THYM | GBM | | | ENSG00000258738 | ENSG00000165501 | LRR1 | CHOL,COAD,GBM,LAML,LGG,OV,PAAD,SARC,THYM,UCEC | GBM | | | ENSG00000258738 | ENSG00000166788 | SAAL1 | CHOL,GBM,LGG,PAAD,THYM,UCEC | GBM | | | ENSG00000258738 | ENSG00000168246 | UBTD2 | CHOL,COAD,GBM,KIRC,LAML,LGG,READ,UCEC | GBM | | | ENSG00000258738 | ENSG00000183814 | LIN9 | CHOL,COAD,GBM,HNSC,LGG,PAAD,UCEC | GBM | | | ENSG00000258738 | ENSG00000186625 | KATNA1 | CHOL,DLBC,GBM,LGG,UCEC | GBM | | | ENSG00000258738 | ENSG00000092470 | WDR76 | GBM,LGG,SARC,THYM,UCS | GBM | | | ENSG00000258738 | ENSG00000106462 | EZH2 | GBM,HNSC,LGG,PAAD,THYM,UCS | GBM | | | ENSG00000258738 | ENSG00000123219 | CENPK | GBM,PAAD,SARC,THYM,UCEC | GBM | | | ENSG00000258738 | ENSG00000132646 | PCNA | GBM,LGG,PAAD,SARC,THYM,UCS | GBM | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000258738.1 | ENST00000557373.1 | 36 | 190 | 300 |
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