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lncRNA: ENSG00000258534 |
Summary for CTD-2134A5.4 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000258534 | Gene symbol | CTD-2134A5.4 |
| Gene name | ||
| HGNC | ||
| Entrez ID | ||
| Gene type | lincRNA | |
| Synonyms | ||
| UniProtAcc |
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Structure and expression level for CTD-2134A5.4 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000258534 | 4.938924e+01 | 1.441645e+00 | 3.488604e-01 | 4.132440e+00 | 3.590000e-05 | 2.138940e-04 | UP | BLCA |
| ENSG00000258534 | 5.742547e+01 | 1.444081e+00 | 1.738014e-01 | 8.308802e+00 | 9.670000e-17 | 1.470000e-15 | UP | HNSC |
| ENSG00000258534 | 4.443399e+01 | 1.401851e+00 | 2.614449e-01 | 5.361936e+00 | 8.230000e-08 | 4.280000e-07 | UP | KIRP |
| ENSG00000258534 | 7.584610e+01 | 2.050720e+00 | 1.574209e-01 | 1.302699e+01 | 8.590000e-39 | 1.360000e-37 | UP | LUSC |
| ENSG00000258534 | 3.758122e+01 | 1.098011e+00 | 1.250909e-01 | 8.777707e+00 | 1.670000e-18 | 1.000000e-17 | UP | BRCA |
| ENSG00000258534 | 4.628668e+01 | 1.579348e+00 | 1.386390e-01 | 1.139180e+01 | 4.590000e-30 | 9.070000e-29 | UP | LUAD |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
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lncRNA-Protein interaction for CTD-2134A5.4 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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