 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ELMO2,CMTM4,EPOR,ZSWIM9,OXNAD1,TBC1D24,MRM2,MCRS1,GLYR1,BRD7,FASTKD3,PLLP,NEU1,CMC2,ATP5MG,ILDR1,DHX38,SIRT3,PPID,CACFD1,TMEM106C,SUGP2,FKRP,OXSM,RNF34,ZDHHC23,TMEM184C,FAM193A,UNKL,OPA3,MDH2,SENP1,FBXL17,ACSS1,FAM120AOS,PIGP,PIGX,IRAK4,TFIP11,SLC25A40,ZFP14,WDR5B,SMUG1,SAFB2,PPP1R37,SNX12,TIMELESS,FAM200A,SMARCC2,HIRIP3,CHKA,KCTD10,TMEM38A,MAEA,PELI3,NMNAT1,USP30,ARL1,HUS1,TSPAN3,RPAP1,SETD2,SCAMP2,RNF40,TANGO2,ACTR6,TBK1,CDIP1,GPRIN3,GKAP1,STT3A,MAP2K5,TAZ,SPG7,PPP1R3E,ATP5F1B,NDUFB2,BAHD1,SARAF,ARCN1,TRIP4,FAM220A,GLRX5,RCCD1,IGIP,COX19,SKAP2,TARBP2,TRIM68,AP3M2,FAN1,TOP2B,RPAP3,MOCS3,IKBKG,CBY1,ACAD10,TIMMDC1,C3orf18,WASHC3,GPR137,ACYP1,SLC48A1,CEP19,EPDR1,XPNPEP3,NCOA6,MRPS35,GLG1,INO80E,FANCF,HERPUD2,ZADH2,NEMP1,CBX7,TMEM101,SYVN1,ZFP62,RACGAP1,ZBED8,USP5,COQ7,C22orf39,C12orf73,DNAJA2,CADPS2,APIP,PPFIBP2,TSC22D4,POGLUT3,FBXW4,TFCP2,MLH1,DHX35,IPO13,AARS1,ZFPL1,TMBIM6,EIF2B1,HIF1AN,UQCC1,PAN2,SIX5,BMF,LRTOMT,TMEM127,TASOR,TIMM10B,WDR1,MBTPS1,NOL3,YKT6,COG7,PFKM,ACOT8,MLF2,FITM2,SPCS1,PDRG1,ZDHHC3,XPO6,PFN2,ATXN2L,COMMD8,GAS8,IDH3B,TTC3,PMVK,HCCS,ILVBL,CUL1,SVIP,ATPAF1,AKAP1,TMEM248,ZFP3,DNAJA3,JKAMP,MARCHF6,CYB561D2,LONRF1,ZC2HC1C,ABHD8,ISCA2,ZNF30,SDHD,HIBADH,OARD1,IST1,MMAB,RAB28,SNX19,ARMCX2,SH2B1,PHKA2,DDX56,INPPL1,ZC3H10,BET1L,CD63,SWI5,CABIN1,MAZ,LAMTOR3,RPN1,IQSEC2,ENOPH1,TMED4,KAZALD1,TIMM44,CNPPD1,DDX24,PHF7,DDX55,IMMT,COG8,SHQ1,CAPN10,KRIT1,EXD2,ZDHHC7,TMX2,RIOX2,SCO1,SQSTM1,SURF1,VPS50,ATP6V0C,GNPTG,WSB2,NUMA1,TMEM8B,PDP2,TMED8,DUS2,PCBP2,MRM1,STYXL1,DDX54,NECAB3,TMEM116,DENND11,OGDHL,NPDC1,OSBPL1A,KANSL2,POLR3K,NUDT12,ANAPC13,MEPCE,PABIR1,HSPA9,TCTA,TMEM251,SLC39A7,NEK9,FBXO44,EP400,SPECC1L,GLT8D1,TRMT2B,FBXO8,P4HTM,EOLA1,PATZ1,PCED1A,TUSC2,SRSF9,SMYD4,SPRYD3,ZFYVE1,LMF1,SLC38A1,PPP1R3F,RAB17,DZIP3,WDR82,STRAP,TAOK2,GATB,DNAJC19,PXMP4,TMEM186,COA1,CEP85,ATG4A,SLC35C2,NKAP,CETN3,ERO1B,GOLGA4,TSG101,CIAO2A,ZSWIM1,FIZ1,TP53INP2,AK6,POMGNT2,CD2BP2,RABEP2,MED29,GSAP,ANKEF1,RAB11FIP3,GGA2,CCDC127,NDUFAF5,TRIM4,GPBP1,MRE11,DIABLO,SND1,ZNF862,PISD,AKTIP,ATP6V1E1,CDIPT,ATP6V0A2,ORAI3,CCDC142,AP3D1,MKKS,UBAC1,GGT7,RYK,UCKL1,COX14,LRP11,PSME3IP1,ANKMY2,NAP1L4,NDUFA6,HECTD4,PRKAG1,CCDC71,NAIF1,DHRS7,USF2,HPS4,HARBI1,PPM1H,DDX23,UNC119B,FKBP11,UBE3B,TMEM187,TCEAL8,DUSP18,DET1,CLCN7,CCDC97,TBC1D15,SUMF1,PYM1,AFG3L2,CEP63,MRPL34,ATPSCKMT,POC5,RBM23,AFAP1L1,RAB6B,UBTF,SLC43A2,RBBP8,SPARCL1,PLEKHH1,CCDC174,TTI1,LYSMD2,PIP4P1,C7orf26,MANBA,ZCWPW1,PCBD1,SDHA,GATAD1,TK2,PSMD10,PFKFB2,POFUT1,TCAF1,HDAC11,SLC25A35,GFM2,LRCH3,CNOT4,SON,N6AMT1,SLC66A1,BCAT2,SGSM3,ALG12,B4GALT7,GMPPB,COX18,NUP37,LPIN1,ATP6V1H,PHKA1,ARMC5,NFRKB,TMEM192,CHD6,TMCO4,ST7,ODAD3,TIGD6,PLA2G6,GDE1,NDUFB5,TUBGCP5,PTPN3,TMEM19,DCP1B,SPATA2,BBS10,CSGALNACT1,KIF21A,CDK4,SH3BGR,HDHD2,ENPP5,GNA12,VPS41,PSKH1,SETD3,SNW1,PIK3IP1,PARP3,SLC3A2,PHF1,PABIR2,SNX21,APOO,ABHD11,TMEM128,TMC4,DEAF1,DYNLL2,AAGAB,UCK1,SMDT1,ANKRD27,RGL3,IRF2,USP28,TXNRD2,UQCRC2,TMEM263,USP19,PARN,TMEM201,VPS33A,MEGF8,POMT2,LAMTOR1,ORC5,TMEM60,AMPD3,WBP1L,PUDP,ECSIT,TPP1,R3HDM2,HOMEZ,BAZ1B,DEXI,PACSIN2,ADCY6,UBL3,ENOX2,ZNF3,TXNDC11,TBC1D20,TAPBPL,ZMYM3,SUSD1,COQ2,VSIG10,SLC49A4,CLGN,RUSF1,RILP,COPB2,MYG1,ABHD10,ST3GAL6,GRIPAP1,DTX3,MTG2,GIN1,NAT9,NDUFA5,NDUFA1,SRRD,EPS15L1,KLHL22,TMEM65,WDR6,URGCP,GNS,TMCC1,AIFM1,COQ9,EIF1B,CBX8,PMS2,RAB35,RETREG2,MAPKAPK5,DHRS4,CRELD1,RAB5B,SPCS2,PARP16,HCFC1,RAD17,ADAL,IMMP1L,TMEM250,SLC38A7,TIMM21,RBM19,BET1,CHCHD4,GLB1,SDSL,GOLM1,CS,EEF2KMT,SMCO4,KLHL26,SLC29A2,DNAJC30,TATDN3,TMEM115,PDHB,MRPS26,HDDC3,COPS7A,ATN1,PLEK2,C7orf31,RIBC1,C7orf50,ITFG2,RCC1L,GXYLT1,RRNAD1,CD99L2,GAK,COQ5,KAT8,VAC14,AIMP2,ANKRD13A,RARB,RNF10,NAGLU,GBA2,RINL,PIP4K2C,RILPL1,PPIC,BAZ2A,ACO2,ABCA2,ATP5F1A,NDUFA4,ZNF74,TUB,BRI3BP,SEC13,C2CD5,POFUT2,CINP,HSPA1L,GAB2,VTI1B,GORASP1,NUP42,IFT27,MED28,LARP7,RTN4IP1,BCL2L2,TBC1D17,GYG1,DCAF16,GOLGA1,RNH1,ING2,UBE2D4,KEAP1,C1GALT1C1,ATP6V0E2,SPPL3,FBXW8,CUEDC1,B4GALT4,ANAPC7,RNF216,USP7,OAZ2,H2AZ2,MAP3K12,TMEM143,NCOA5,IKZF4,DCTN2,SURF6,PAFAH2,COX17,ATP5MJ,AAAS,PRIMPOL,ANKRD9,PRDM4,TADA2B,SYNE4,WDR20,SCAPER,ST6GALNAC4,LIPT2,THAP6,DCAF1,TMEM129,DGLUCY,C12orf66,KLHL12,TMEM9B,AIFM2,RRP8,SPRING1,MRPS33,ATG3,CHMP2B,LIAS,PTPN21,CKB,SDR39U1,EIF2AK1,GCC1,TSFM,PNPLA8,TMEM150C,TSPAN12,ERP29,MAPKAP1,UBFD1,LRRC29,AKIP1,STOML1,FUNDC1,RBM10,TWF1,NFS1,VEGFB,ATP6V1E2,MBD6,NDUFA8,SPATA20,TMEM230,AHSA1,USO1,CYREN,SPIRE2,STEEP1,B2M,RFX1,RBM48,GMEB2,SFMBT1,HSD17B14,MKRN1,OXCT1,BCDIN3D,SRCAP,C3orf33,SLC30A9,MARS1,ZNF84,ZCRB1,ATP5MC2,RHBDD3,PDCD6,PRPF40B,SPSB2,B4GALT6,FRYL,KATNIP,NGRN,NGLY1,FASTK,COLCA2,USP20,TBC1D5,ASB8,TRMT10A,MORC4,MRFAP1L1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | PPP1R13L,S100A16,PAFAH1B3,TPM4,SFN,IFFO2,FAM83G,TMEM160,LDHA,TICAM1,MYO1E | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000258056 | ENST00000552576 | exon_skip_379758 | chr3:180975312-180975404 | -11.05 | -0.1842 | FXR1 | ENST00000357559 | Frame-shift | | ENSG00000258056 | ENST00000552576 | exon_skip_462554 | chr6:136267028-136267175 | -14.95 | -0.1311 | BCLAF1 | ENST00000531224 | In-frame | | ENSG00000258056 | ENST00000552576 | exon_skip_82144 | chr12:50087362-50087485 | -21.46 | -0.2083 | SMARCD1 | ENST00000394963 | In-frame | | ENSG00000258056 | ENST00000552576 | exon_skip_123726 | chr15:75339701-75339878 | -28.04 | -0.2093 | COMMD4 | ENST00000267935 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000258056 | ENST00000552576 | exon_skip_106783 | chr14:55673171-55673255 | -8.11 | -0.1210 | KTN1 | ENST00000395314 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000258056 | hsa-mir-455 | ENST00000552576 | chr12:55729505-55729602 | 202.00 | -94.18 | 99 | NA | | ENSG00000258056 | hsa-mir-455 | ENST00000552576 | chr12:55729105-55729184 | 201.00 | -99.13 | 87 | NA | | ENSG00000258056 | hsa-mir-455 | ENST00000552576 | chr12:55729237-55729330 | 187.00 | -102.44 | 94 | NA | | ENSG00000258056 | hsa-mir-455 | ENST00000552576 | chr12:55729970-55730072 | 180.00 | -86.50 | 100 | NA | | ENSG00000258056 | hsa-mir-455 | ENST00000552576 | chr12:55730298-55730395 | 178.00 | -75.19 | 94 | NA | | ENSG00000258056 | hsa-mir-455 | ENST00000552576 | chr12:55729590-55729690 | 175.00 | -93.40 | 95 | NA | | ENSG00000258056 | hsa-mir-455 | ENST00000552576 | chr12:55730133-55730230 | 175.00 | -81.59 | 96 | NA | | ENSG00000258056 | hsa-mir-455 | ENST00000552576 | chr12:55729768-55729869 | 168.00 | -80.08 | 98 | NA | | ENSG00000258056 | hsa-mir-455 | ENST00000552576 | chr12:55729355-55729438 | 145.00 | -80.31 | 93 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000258056 | ENSG00000004866 | ST7 | ACC,GBM,KICH,KIRC,PAAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000067221 | STOML1 | ACC,CHOL,KICH,MESO,PRAD,STAD,THCA,UCS | KICH | | | ENSG00000258056 | ENSG00000100099 | HPS4 | ACC,CHOL,KICH,LIHC,PCPG,UCS,UVM | KICH | | | ENSG00000258056 | ENSG00000100100 | PIK3IP1 | ACC,BLCA,HNSC,KICH,KIRC,PCPG | KICH | | | ENSG00000258056 | ENSG00000100109 | TFIP11 | ACC,KICH,KIRC,LIHC,UCS | KICH | | | ENSG00000258056 | ENSG00000100412 | ACO2 | ACC,CHOL,HNSC,KICH,KIRC,TGCT,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000100558 | PLEK2 | ACC,CHOL,KICH,KIRC,THYM | KICH | | | ENSG00000258056 | ENSG00000103249 | CLCN7 | ACC,DLBC,KICH,LIHC,PCPG | KICH | | | ENSG00000258056 | ENSG00000109323 | MANBA | ACC,CESC,DLBC,KICH,LIHC | KICH | | | ENSG00000258056 | ENSG00000122042 | UBL3 | ACC,KICH,KIRC,PAAD,UVM | KICH | | | ENSG00000258056 | ENSG00000123415 | SMUG1 | ACC,BLCA,BRCA,ESCA,GBM,HNSC,KICH,KIRP,LAML,LGG,LIHC,LUAD,LUSC,MESO,OV,PCPG,PRAD,SKCM,STAD,THCA,UCEC,UCS | KICH | | | ENSG00000258056 | ENSG00000133805 | AMPD3 | ACC,CHOL,KICH,KIRC,KIRP | KICH | | | ENSG00000258056 | ENSG00000133943 | DGLUCY | ACC,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000134291 | TMEM106C | ACC,CHOL,KICH,KIRC,KIRP,LIHC,PAAD,PCPG,THCA,UVM | KICH | | | ENSG00000258056 | ENSG00000135404 | CD63 | ACC,BLCA,BRCA,CESC,CHOL,ESCA,HNSC,KICH,KIRP,LIHC,OV,PAAD,PRAD,SARC,SKCM,UCEC | KICH | | | ENSG00000258056 | ENSG00000140280 | LYSMD2 | ACC,CHOL,KICH,KIRC,KIRP,PAAD | KICH | | | ENSG00000258056 | ENSG00000145743 | FBXL17 | ACC,KICH,KIRC,PAAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000146701 | MDH2 | ACC,CHOL,KICH,KIRC,KIRP,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000152556 | PFKM | ACC,CHOL,KICH,KIRC,KIRP,OV,PAAD,PCPG,TGCT,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000165675 | ENOX2 | ACC,CHOL,KICH,KIRC,LIHC,TGCT,UCS | KICH | | | ENSG00000258056 | ENSG00000166340 | TPP1 | ACC,CHOL,DLBC,ESCA,KICH,LAML,LIHC,READ,TGCT | KICH | | | ENSG00000258056 | ENSG00000166710 | B2M | ACC,CHOL,DLBC,KICH,THYM | KICH | | | ENSG00000258056 | ENSG00000166797 | CIAO2A | ACC,ESCA,HNSC,KICH,KIRC | KICH | | | ENSG00000258056 | ENSG00000168003 | SLC3A2 | ACC,KICH,KIRC,LIHC,PAAD | KICH | | | ENSG00000258056 | ENSG00000180304 | OAZ2 | ACC,CHOL,GBM,HNSC,KICH,PAAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000182108 | DEXI | ACC,COAD,GBM,KICH,KIRC,PAAD | KICH | | | ENSG00000258056 | ENSG00000183597 | TANGO2 | ACC,CHOL,KICH,KIRC,KIRP,LIHC,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000198001 | IRAK4 | ACC,CHOL,HNSC,KICH,KIRC,KIRP,LAML,LIHC | KICH | | | ENSG00000258056 | ENSG00000153786 | ZDHHC7 | BLCA,CHOL,KICH,KIRC,LAML,TGCT,THCA | KICH | | | ENSG00000258056 | ENSG00000198270 | TMEM116 | BLCA,CHOL,GBM,KICH,KIRC,KIRP,LGG,LIHC,MESO,TGCT,THCA | KICH | | | ENSG00000258056 | ENSG00000027847 | B4GALT7 | BRCA,CESC,CHOL,HNSC,KICH,LIHC,PAAD | KICH | | | ENSG00000258056 | ENSG00000104866 | PPP1R37 | BRCA,CHOL,HNSC,KICH,PAAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000125967 | NECAB3 | BRCA,ESCA,HNSC,KICH,KIRC,MESO,PAAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000138495 | COX17 | BRCA,KICH,KIRC,KIRP,LGG,LUAD,MESO,PAAD,PRAD,THCA | KICH | | | ENSG00000258056 | ENSG00000164896 | FASTK | BRCA,CHOL,KICH,LIHC,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000175854 | SWI5 | BRCA,CHOL,KICH,KIRC,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000177548 | RABEP2 | BRCA,CHOL,KICH,KIRC,LIHC | KICH | | | ENSG00000258056 | ENSG00000178188 | SH2B1 | BRCA,CHOL,HNSC,KICH,KIRC,LGG,LIHC,THCA,UCS | KICH | | | ENSG00000258056 | ENSG00000006007 | GDE1 | CESC,CHOL,KICH,KIRC,LIHC | KICH | | | ENSG00000258056 | ENSG00000070087 | PFN2 | CESC,KICH,KIRC,PAAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000102934 | PLLP | CESC,CHOL,HNSC,KICH,KIRC,THCA | KICH | | | ENSG00000258056 | ENSG00000106077 | ABHD11 | CESC,CHOL,HNSC,KICH,LGG | KICH | | | ENSG00000258056 | ENSG00000107331 | ABCA2 | CESC,ESCA,HNSC,KICH,PAAD | KICH | | | ENSG00000258056 | ENSG00000135052 | GOLM1 | CESC,HNSC,KICH,KIRC,TGCT | KICH | | | ENSG00000258056 | ENSG00000157259 | GATAD1 | CESC,CHOL,HNSC,KICH,READ,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000162065 | TBC1D24 | CESC,HNSC,KICH,KIRC,THCA | KICH | | | ENSG00000258056 | ENSG00000162298 | SYVN1 | CESC,KICH,LGG,THCA,UCS | KICH | | | ENSG00000258056 | ENSG00000165458 | INPPL1 | CESC,CHOL,KICH,KIRC,LIHC,TGCT,THCA,UCS | KICH | | | ENSG00000258056 | ENSG00000174669 | SLC29A2 | CESC,ESCA,HNSC,KICH,KIRC,UVM | KICH | | | ENSG00000258056 | ENSG00000178950 | GAK | CESC,DLBC,KICH,KIRC,KIRP,LIHC,TGCT | KICH | | | ENSG00000258056 | ENSG00000183723 | CMTM4 | CESC,KICH,KIRC,THCA,UVM | KICH | | | ENSG00000258056 | ENSG00000197296 | FITM2 | CESC,KICH,KIRC,LIHC,PAAD,TGCT,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000197620 | EOLA1 | CESC,CHOL,HNSC,KICH,KIRC,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000198168 | SVIP | CESC,ESCA,HNSC,KICH,KIRC,LIHC,UVM | KICH | | | ENSG00000258056 | ENSG00000205517 | RGL3 | CESC,ESCA,KICH,KIRC,LGG,PAAD,UVM | KICH | | | ENSG00000258056 | ENSG00000004961 | HCCS | CHOL,KICH,KIRC,LAML,LIHC,THCA | KICH | | | ENSG00000258056 | ENSG00000048028 | USP28 | CHOL,KICH,KIRC,LIHC,PCPG,READ,UCS | KICH | | | ENSG00000258056 | ENSG00000062485 | CS | CHOL,KICH,KIRC,KIRP,LIHC,PAAD,PCPG,SARC,THCA | KICH | | | ENSG00000258056 | ENSG00000073578 | SDHA | CHOL,HNSC,KICH,KIRC,KIRP,SARC,TGCT,THCA | KICH | | | ENSG00000258056 | ENSG00000075303 | SLC25A40 | CHOL,KICH,KIRC,LIHC,UVM | KICH | | | ENSG00000258056 | ENSG00000086289 | EPDR1 | CHOL,DLBC,ESCA,HNSC,KICH,KIRC,KIRP,LIHC | KICH | | | ENSG00000258056 | ENSG00000088356 | PDRG1 | CHOL,ESCA,KICH,KIRC,LIHC,PAAD,PCPG,STAD,THCA | KICH | | | ENSG00000258056 | ENSG00000088682 | COQ9 | CHOL,KICH,KIRC,KIRP,LAML,LUAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000091947 | TMEM101 | CHOL,KICH,KIRC,KIRP,PCPG | KICH | | | ENSG00000258056 | ENSG00000103042 | SLC38A7 | CHOL,KICH,KIRC,LIHC,PCPG,THCA | KICH | | | ENSG00000258056 | ENSG00000103043 | VAC14 | CHOL,KICH,KIRC,LIHC,PCPG,THCA,UCS | KICH | | | ENSG00000258056 | ENSG00000103227 | LMF1 | CHOL,DLBC,HNSC,KICH,KIRC,THCA | KICH | | | ENSG00000258056 | ENSG00000103365 | GGA2 | CHOL,HNSC,KICH,KIRC,LIHC,TGCT,THYM,UCS | KICH | | | ENSG00000258056 | ENSG00000103932 | RPAP1 | CHOL,KICH,LIHC,PCPG,TGCT,THYM | KICH | | | ENSG00000258056 | ENSG00000104980 | TIMM44 | CHOL,KICH,KIRC,KIRP,PAAD | KICH | | | ENSG00000258056 | ENSG00000105429 | MEGF8 | CHOL,HNSC,KICH,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000106636 | YKT6 | CHOL,KICH,KIRP,LIHC,TGCT,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000119421 | NDUFA8 | CHOL,KICH,KIRC,KIRP,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000127527 | EPS15L1 | CHOL,KICH,KIRC,LIHC,THCA | KICH | | | ENSG00000258056 | ENSG00000130560 | UBAC1 | CHOL,KICH,KIRC,KIRP,LGG,LIHC | KICH | | | ENSG00000258056 | ENSG00000133131 | MORC4 | CHOL,KICH,KIRC,THYM,UVM | KICH | | | ENSG00000258056 | ENSG00000138617 | PARP16 | CHOL,HNSC,KICH,PCPG,TGCT,THCA | KICH | | | ENSG00000258056 | ENSG00000141385 | AFG3L2 | CHOL,KICH,KIRC,PCPG,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000141447 | OSBPL1A | CHOL,KICH,THCA,THYM,UVM | KICH | | | ENSG00000258056 | ENSG00000147408 | CSGALNACT1 | CHOL,KICH,KIRC,THCA,UVM | KICH | | | ENSG00000258056 | ENSG00000151239 | TWF1 | CHOL,KICH,KIRC,LIHC,READ,UVM | KICH | | | ENSG00000258056 | ENSG00000152583 | SPARCL1 | CHOL,HNSC,KICH,KIRC,KIRP,THCA | KICH | | | ENSG00000258056 | ENSG00000156411 | ATP5MJ | CHOL,KICH,KIRC,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000157510 | AFAP1L1 | CHOL,KICH,KIRP,TGCT,THYM,UCS | KICH | | | ENSG00000258056 | ENSG00000157837 | SPPL3 | CHOL,KICH,KIRP,LIHC,PAAD,PCPG,READ | KICH | | | ENSG00000258056 | ENSG00000159792 | PSKH1 | CHOL,KICH,KIRC,STAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000161800 | RACGAP1 | CHOL,KICH,LIHC,TGCT,UCS | KICH | | | ENSG00000258056 | ENSG00000163754 | GYG1 | CHOL,DLBC,KICH,KIRC,LIHC,PAAD,THYM,UCS | KICH | | | ENSG00000258056 | ENSG00000163812 | ZDHHC3 | CHOL,KICH,KIRC,LIHC,UVM | KICH | | | ENSG00000258056 | ENSG00000168488 | ATXN2L | CHOL,KICH,LIHC,LUAD,PCPG,UCS | KICH | | | ENSG00000258056 | ENSG00000173085 | COQ2 | CHOL,KICH,KIRC,KIRP,THYM | KICH | | | ENSG00000258056 | ENSG00000173511 | VEGFB | CHOL,KICH,LGG,LIHC,STAD,THCA | KICH | | | ENSG00000258056 | ENSG00000174516 | PELI3 | CHOL,KICH,LIHC,PAAD,STAD,UCS | KICH | | | ENSG00000258056 | ENSG00000178202 | POGLUT3 | CHOL,ESCA,KICH,LIHC,READ,UCS,UVM | KICH | | | ENSG00000258056 | ENSG00000178397 | FAM220A | CHOL,KICH,KIRC,LIHC,STAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000185883 | ATP6V0C | CHOL,DLBC,KICH,KIRC,LIHC,TGCT,THYM | KICH | | | ENSG00000258056 | ENSG00000187555 | USP7 | CHOL,KICH,KIRC,LIHC,PCPG,THCA | KICH | | | ENSG00000258056 | ENSG00000214290 | COLCA2 | CHOL,COAD,GBM,HNSC,KICH,KIRC,PAAD | KICH | | | ENSG00000258056 | ENSG00000240230 | COX19 | CHOL,ESCA,HNSC,KICH,PAAD,READ,THCA,UVM | KICH | | | ENSG00000258056 | ENSG00000235194 | PPP1R3E | COAD,HNSC,KICH,LIHC,PAAD,PCPG,READ,SKCM,THCA,UCS | KICH | | | ENSG00000258056 | ENSG00000033327 | GAB2 | DLBC,KICH,KIRC,READ,TGCT | KICH | | | ENSG00000258056 | ENSG00000089486 | CDIP1 | DLBC,GBM,KICH,KIRC,LIHC,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000100612 | DHRS7 | DLBC,KICH,KIRC,KIRP,THCA | KICH | | | ENSG00000258056 | ENSG00000123836 | PFKFB2 | DLBC,GBM,KICH,KIRC,LIHC,THCA | KICH | | | ENSG00000258056 | ENSG00000139116 | KIF21A | DLBC,KICH,KIRC,KIRP,PAAD | KICH | | | ENSG00000258056 | ENSG00000154359 | LONRF1 | DLBC,HNSC,KICH,KIRC,THYM | KICH | | | ENSG00000258056 | ENSG00000154814 | OXNAD1 | DLBC,ESCA,HNSC,KICH,KIRC,KIRP,THCA,UVM | KICH | | | ENSG00000258056 | ENSG00000164983 | TMEM65 | DLBC,KICH,LIHC,READ,THYM | KICH | | | ENSG00000258056 | ENSG00000165861 | ZFYVE1 | DLBC,KICH,KIRC,PCPG,READ,TGCT,THYM | KICH | | | ENSG00000258056 | ENSG00000167705 | RILP | DLBC,HNSC,KICH,KIRC,KIRP,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000185477 | GPRIN3 | DLBC,KICH,KIRC,PAAD,UVM | KICH | | | ENSG00000258056 | ENSG00000101346 | POFUT1 | ESCA,KICH,KIRC,PCPG,STAD,TGCT,THCA | KICH | | | ENSG00000258056 | ENSG00000101417 | PXMP4 | ESCA,KICH,KIRC,MESO,PAAD,PCPG,STAD,THCA | KICH | | | ENSG00000258056 | ENSG00000110721 | CHKA | ESCA,HNSC,KICH,KIRC,THCA,UVM | KICH | | | ENSG00000258056 | ENSG00000118276 | B4GALT6 | ESCA,KICH,KIRC,PAAD,UCS | KICH | | | ENSG00000258056 | ENSG00000163257 | DCAF16 | ESCA,HNSC,KICH,KIRC,LIHC,PAAD,PCPG,TGCT | KICH | | | ENSG00000258056 | ENSG00000184307 | ZDHHC23 | ESCA,HNSC,KICH,KIRC,KIRP,TGCT,THCA | KICH | | | ENSG00000258056 | ENSG00000088543 | C3orf18 | GBM,KICH,KIRC,LIHC,MESO,PAAD,STAD,TGCT,THCA,THYM,UCS | KICH | | | ENSG00000258056 | ENSG00000153132 | CLGN | GBM,KICH,LIHC,PAAD,PCPG | KICH | | | ENSG00000258056 | ENSG00000198003 | ODAD3 | GBM,KICH,KIRP,LGG,THCA | KICH | | | ENSG00000258056 | ENSG00000130159 | ECSIT | HNSC,KICH,KIRC,PAAD,PCPG,THCA | KICH | | | ENSG00000258056 | ENSG00000130312 | MRPL34 | HNSC,KICH,KIRC,KIRP,PAAD,PRAD,THCA | KICH | | | ENSG00000258056 | ENSG00000144827 | ABHD10 | HNSC,KICH,KIRC,PAAD,THCA | KICH | | | ENSG00000258056 | ENSG00000167487 | KLHL26 | HNSC,KICH,KIRC,PAAD,THYM | KICH | | | ENSG00000258056 | ENSG00000184831 | APOO | HNSC,KICH,KIRC,KIRP,LIHC,MESO,PAAD,PRAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000186532 | SMYD4 | HNSC,KICH,TGCT,THCA,UVM | KICH | | | ENSG00000258056 | ENSG00000189043 | NDUFA4 | HNSC,KICH,KIRP,SKCM,THCA | KICH | | | ENSG00000258056 | ENSG00000241878 | PISD | HNSC,KICH,KIRC,LAML,PAAD | KICH | | | ENSG00000258056 | ENSG00000010318 | PHF7 | KICH,KIRC,LIHC,PRAD,UVM | KICH | | | ENSG00000258056 | ENSG00000054690 | PLEKHH1 | KICH,KIRC,SKCM,THCA,UVM | KICH | | | ENSG00000258056 | ENSG00000064225 | ST3GAL6 | KICH,KIRC,SKCM,THCA,UVM | KICH | | | ENSG00000258056 | ENSG00000067177 | PHKA1 | KICH,KIRC,MESO,PAAD,THYM | KICH | | | ENSG00000258056 | ENSG00000070778 | PTPN21 | KICH,KIRC,TGCT,UCS,UVM | KICH | | | ENSG00000258056 | ENSG00000072954 | TMEM38A | KICH,KIRC,KIRP,THCA,UCS | KICH | | | ENSG00000258056 | ENSG00000078804 | TP53INP2 | KICH,KIRP,TGCT,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000111371 | SLC38A1 | KICH,KIRP,THCA,THYM,UVM | KICH | | | ENSG00000258056 | ENSG00000113013 | HSPA9 | KICH,KIRC,PAAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000125863 | MKKS | KICH,KIRC,KIRP,PAAD,PCPG,THCA | KICH | | | ENSG00000258056 | ENSG00000129473 | BCL2L2 | KICH,KIRC,PAAD,READ,THCA,THYM,UVM | KICH | | | ENSG00000258056 | ENSG00000130695 | CEP85 | KICH,KIRC,LIHC,TGCT,THCA | KICH | | | ENSG00000258056 | ENSG00000135241 | PNPLA8 | KICH,KIRC,KIRP,TGCT,THCA | KICH | | | ENSG00000258056 | ENSG00000140320 | BAHD1 | KICH,KIRC,LIHC,PAAD,TGCT,THYM | KICH | | | ENSG00000258056 | ENSG00000156381 | ANKRD9 | KICH,KIRC,KIRP,SARC,THCA,THYM,UVM | KICH | | | ENSG00000258056 | ENSG00000166165 | CKB | KICH,KIRC,PAAD,STAD,THCA | KICH | | | ENSG00000258056 | ENSG00000166387 | PPFIBP2 | KICH,KIRC,READ,TGCT,UVM | KICH | | | ENSG00000258056 | ENSG00000172840 | PDP2 | KICH,KIRC,MESO,PCPG,UCS,UVM | KICH | | | ENSG00000258056 | ENSG00000197444 | OGDHL | KICH,KIRC,PAAD,THCA,THYM | KICH | | | ENSG00000258056 | ENSG00000204991 | SPIRE2 | KICH,MESO,SARC,THCA,UVM | KICH | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000258056 | ENST00000552576 | TPM4 | ENSG00000167460 | ENST00000592822 | -0.2070 | 940 | - | KICH | | ENSG00000258056 | ENST00000552576 | S100A16 | ENSG00000188643 | ENST00000368705 | -0.1605 | 81 | - | KICH |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000258056.2 | ENST00000552576.2 | 76 | 230 | 460 |
|
