 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | TBC1D14,CNOT1,IDH3A,VPS4B,MYH9,SNX12,RNF123,RDX,SNX6,UBR1,PI4KA,TRIP11,KAT5,MID2,ITGB1,PLEKHB2,FLVCR2,XPC,EIF4G1,SUCLG2,VPS26A,PSMC1,SEC24B,CLTC,IPO11,ACSL3,CTNNB1,CCDC47,BCL2L13,RAB31,HSPA8,APAF1,TMEM127,RNF111,PCNX1,TPP1,COPS4,SEC24D,LRP10,IQGAP1,IQGAP2,SEC23A,STK24,UBE3C,ABHD2,COPB2,PRKAR2A,TM9SF1,RAB11FIP1,NIPA2,USP9X,MYOF,HSPG2,ZFYVE1,KIF13B,DYNC1LI2,KBTBD4,ATG7,DCTN1,DNAJC13,FOXN3,ADAM9,AZI2,PPARA,TRIP12,ITGA6,TFIP11,SEC23B,GTF2I,CSNK1A1,SPTLC1,DYNC1H1,SMG8,CAB39,POLK,ACTN4,ERAP1,YME1L1,CYFIP1,ARL2BP,CAST,PLAA,SNX18,BTD,CCNK,PSMD1,AHNAK,MCFD2,SDAD1,PGM2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000257815 | ENST00000553135 | exon_skip_436035 | chr5:79656957-79657001 | -6.51 | -0.3100 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_111863 | chr14:23565815-23565892 | -15.55 | -0.2549 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_382458 | chr3:38131595-38131638 | -6.48 | -0.1662 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000257815 | ENST00000549651 | exon_skip_16568 | chr1:201989382-201989531 | -16.13 | -0.1333 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_41813 | chr10:68337857-68337996 | -14.75 | -0.1432 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_41841 | chr10:68756272-68756483 | -19.88 | -0.1169 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_53559 | chr10:101793912-101793998 | -8.70 | -0.1012 | OGA | ENST00000361464 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_66482 | chr11:126274926-126275021 | -10.25 | -0.1152 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_74009 | chr11:64773429-64773505 | -9.58 | -0.2129 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_87733 | chr12:120571190-120571291 | -14.14 | -0.2049 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_114365 | chr14:74290026-74290118 | -14.50 | -0.1812 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_127618 | chr15:58890280-58890461 | -15.96 | -0.1071 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_309204 | chr19:49181348-49181461 | -13.73 | -0.2112 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_319223 | chr19:43526200-43526349 | -19.10 | -0.1447 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_324294 | chr2:27774423-27774530 | -12.80 | -0.2977 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_350725 | chr20:35500048-35500169 | -10.10 | -0.1041 | CEP250 | ENST00000397527 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_353131 | chr20:58669290-58669453 | -19.80 | -0.1752 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_358821 | chr20:63943652-63943669 | -6.26 | -1.2520 | UCKL1 | ENST00000354216 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_370518 | chr22:50247691-50247776 | -9.61 | -0.1264 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_377198 | chr3:123130479-123130616 | -18.05 | -0.1492 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_380242 | chr3:186784961-186785101 | -12.58 | -0.1048 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_433210 | chr4:177436275-177436351 | -7.16 | -0.1461 | AGA | ENST00000264595 | Frame-shift | | ENSG00000257815 | ENST00000549651 | exon_skip_442657 | chr5:74730259-74730398 | -13.89 | -0.1077 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000257815 | ENST00000549651 | exon_skip_445390 | chr5:150403120-150403312 | -28.29 | -0.1664 | CD74 | ENST00000009530 | In-frame | | ENSG00000257815 | ENST00000553135 | exon_skip_470226 | chr7:103307595-103307708 | -13.99 | -0.1283 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_476549 | chr7:76013741-76013887 | -18.60 | -0.1691 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | | ENSG00000257815 | ENST00000549651 | exon_skip_511212 | chrX:71555189-71555385 | -22.47 | -0.1183 | OGT | ENST00000373719 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_11029 | chr1:154989559-154989707 | -13.29 | -0.1278 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_52701 | chr10:97468965-97469104 | -15.76 | -0.1487 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_140339 | chr16:635611-635774 | -19.59 | -0.1315 | METTL26 | ENST00000301686 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_153767 | chr17:48057031-48057121 | -11.92 | -0.1419 | NFE2L1 | ENST00000362042 | In-frame | | ENSG00000257815 | ENST00000553135 | exon_skip_5818 | chr1:45568484-45568684 | -15.44 | -0.1816 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_125857 | chr15:34361399-34361532 | -15.55 | -0.1851 | LPCAT4 | ENST00000314891 | Frame-shift | | ENSG00000257815 | ENST00000553135 | exon_skip_439146 | chr5:154950820-154950938 | -13.48 | -0.1498 | MRPL22 | ENST00000523037 | Frame-shift |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000257815 | hsa-mir-22 | ENST00000549419 | chr12:69904191-69904279 | 169.00 | -81.21 | 84 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000549419 | chr12:69904356-69904440 | 154.00 | -68.17 | 84 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000549419 | chr12:69904471-69904564 | 144.00 | -76.84 | 94 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000550216 | chr12:70225059-70225160 | 189.00 | -106.45 | 98 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000550216 | chr12:70225279-70225367 | 161.00 | -70.03 | 87 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000550216 | chr12:70225372-70225466 | 146.00 | -64.83 | 93 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000549651 | chr12:70242490-70242591 | 189.00 | -106.45 | 98 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000549651 | chr12:70242352-70242441 | 168.00 | -89.25 | 91 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000549651 | chr12:70242844-70242922 | 164.00 | -73.14 | 67 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000549651 | chr12:70242742-70242826 | 156.00 | -74.40 | 84 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000549651 | chr12:70243007-70243090 | 153.00 | -58.84 | 72 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000549651 | chr12:70242633-70242710 | 149.00 | -68.74 | 83 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000553135 | chr12:70242779-70242857 | 164.00 | -73.14 | 67 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000553135 | chr12:70242677-70242761 | 156.00 | -74.40 | 84 | NA | | ENSG00000257815 | hsa-mir-22 | ENST00000553135 | chr12:70242568-70242645 | 149.00 | -68.74 | 83 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_254581 | ENSG00000257815.4 | chr12 | 70215977 | - | antisense | RP11-611E13.2 | ENST00000549419.4 | antisense | RP11-611E13.2-001 |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000257815 | LncEditing_254581 | LAML | chr12_70215977_- | 3.907979e+00 | 3.235203e+00 | 3.668829e+00 | 2.058493e+00 | 3.954281e-02 | 4.006183e-02 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000257815 | PRANCR,hsa-mir-22,C1orf35 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,FUZ | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,PRR14 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,ILKAP | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,RETREG3 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,BOLA1 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,POLR2H | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,DYNC2I2 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,MRPL53 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,TSEN54 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,TEPSIN | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,FBXO46 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,CCDC57 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,SNRPA | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,INTS11 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,SUGP1 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,CDK5RAP3 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,UBXN11 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,WDR83 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,SSBP4 | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,NT5C | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,SRRT | KICH,CHOL,PAAD,THYM,KIRP | | ENSG00000257815 | PRANCR,hsa-mir-22,PMF1 | KICH,CHOL,PAAD,THYM,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000257815.4 | ENST00000549419.4 | 130 | 389 | 0 | | ENSG00000257815.4 | ENST00000550216.1 | 145 | 434 | 0 | | ENSG00000257815.4 | ENST00000549651.1 | 66 | 259 | 459 | | ENSG00000257815.4 | ENST00000553135.1 | 87 | 28 | 291 |
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