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lncRNA: ENSG00000257605

Summary for MYG1-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000257605
	Gene symbol	MYG1-AS1
	Gene name	MYG1 antisense RNA 1
	HGNC	54810
	Entrez ID
	Gene type	antisense
	Synonyms	12q13.13\|RP11-680A11.5\|MYG1-AS1
	UniProtAcc

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Structure and expression level for MYG1-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000257605	3.710761e+01	1.534376e+00	3.758515e-01	4.082401e+00	4.460000e-05	2.105350e-04	UP	CHOL
ENSG00000257605	4.902829e+01	2.249512e+00	1.259870e-01	1.785511e+01	2.640000e-71	1.360000e-69	UP	KIRC
ENSG00000257605	5.066940e+01	1.149782e+00	2.036351e-01	5.646286e+00	1.640000e-08	2.170000e-07	UP	BLCA
ENSG00000257605	3.895998e+01	1.822283e+00	1.671075e-01	1.090486e+01	1.090000e-27	5.660000e-26	UP	KIRP
ENSG00000257605	2.289901e+01	1.381541e+00	1.201256e-01	1.150080e+01	1.310000e-30	3.590000e-29	UP	COAD
ENSG00000257605	2.412074e+01	1.389172e+00	2.723531e-01	5.100630e+00	3.390000e-07	4.810000e-06	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000257605	4.795301e-01	8.591884e-04	CHOL	1.514654e-03
ENSG00000257605	4.098765e-01	4.920103e-26	KIRC	1.029789e-24

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lncRNA-Protein interaction for MYG1-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000257605	ENST00000550263	RP11-680A11.5	ENSG00000197905	TEAD4	6.69	90.6885	Q15561	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000257605	ENST00000550263	RP11-680A11.5	ENSG00000100296	THOC5	75.37	92.2921	Q13769	RBP	NA

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lncRNA-DNA interaction for MYG1-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for MYG1-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNOT4,PREPL,CENPC,FAM168B,DSTYK,NEK4,METTL14,RIF1,CES2,RMDN3,AP5M1,SGPP2,VPS4B,RNF123,TBC1D5,ZMYND11,RDX,HIPK1,RNF40,KIAA1958,STX17,DAG1,SEPTIN10,UBR1,EPB41,ANKRD46,CHD8,TMEM192,DAB2IP,CEP104,TRIP11,KIAA1109,COQ7,KAT6B,MEGF9,KANK2,SPTY2D1,CREBBP,UBE4A,PBX1,MSH3,HINT3,ABLIM1,PUM1,NR2C2,C11orf54,BTBD9,CLTC,ATRN,RABL3,MAN1A2,PCYOX1,ZFP1,L2HGDH,EPB41L5,SIN3A,VGLL4,SON,NAPEPLD,NBR1,CCDC47,SNX19,PHKB,PDPK1,KTN1,MCCC2,ALDH3A2,PHF3,C5orf24,ACBD5,BBS2,LONP2,STRN,RNF111,TP53BP1,TUBGCP4,FAM98B,ERLIN2,NFIX,KIF1C,KIDINS220,SNX30,DYNC1I2,GIGYF2,DOCK7,IVD,ACOX1,SMARCC1,SLMAP,CIPC,RAD50,DDX6,PATJ,ETFDH,IQGAP2,RAI1,PCCA,PRMT5,STK24,ATF2,NCOA2,DCAF11,ARHGAP5,AFF4,SLC25A15,MPDZ,NIPBL,CCDC85C,PHF8,ALAS1,LRRC58,CHMP3,KLHL24,CLPX,CRY2,PRKAR2A,NDRG2,NBAS,SORL1,SNRNP200,ARPIN,USP9X,ZFAND3,MAST4,WWP2,NADK2,NGRN,PCM1,KIF13B,ASH1L,KBTBD4,CCDC121,ZNF106,CHTF8,MARVELD2,FOXN3,PTPRF,TCAF1,PUM2,HERC3,SUN2,USP46,SMG6,SF3A1,KIAA0232,KAT7,DDB1,SERINC1,ST13,KMT2A,UTP14C,APOOL,DOCK9,PEX19,PPARA,GPATCH8,ITGA6,TADA2B,SBF2,AQR,NUBPL,ALDH5A1,NEO1,SEC23B,SYNJ2BP,CEP68,MED1,EIF3L,PLS1,TGOLN2,HBP1,SOS2,CSNK1A1,LARS2,RO60,KIF1B,HUWE1,PIK3C2A,POLK,ATP1A1,ACADM,RANBP2,DHFR2,CTNNA1,ELF1,TBC1D9B,FAM20B,OSBPL1A,MIEF1,ZNF28,ARL2BP,TMEM184C,PEX11A,USP8,RAD17,SIK2,AKAP1,TBCK,KIF3B,ZMYM3,BTD,ICE2,CCDC186,RNF141,KIAA1191,FAM172A,ATXN10,GLYR1,EHHADH,NCOR1,NDUFS1,LMTK2,MARK2,RAB6A

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000257605	ENST00000550263	exon_skip_89597	chr12:6672349-6672532	-27.06	-0.1650	ZNF384	ENST00000361959,ENST00000396801	In-frame
ENSG00000257605	ENST00000550263	exon_skip_110809	chr14:105449358-105449409	-10.43	-0.2980	MTA1	ENST00000331320	In-frame
ENSG00000257605	ENST00000550263	exon_skip_150854	chr17:32366664-32366757	-9.49	-0.1201	ZNF207	ENST00000321233	In-frame
ENSG00000257605	ENST00000550263	exon_skip_30682	chr1:151310210-151310255	-8.10	-0.1976	PI4KB	ENST00000368873	In-frame
ENSG00000257605	ENST00000550263	exon_skip_85538	chr12:71894324-71894375	-7.88	-0.4378	TBC1D15	ENST00000550746	In-frame
ENSG00000257605	ENST00000550263	exon_skip_353131	chr20:58669290-58669453	-23.04	-0.1646	STX16	ENST00000371141	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_370518	chr22:50247691-50247776	-15.02	-0.1951	HDAC10	ENST00000216271	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_380242	chr3:186784961-186785101	-12.40	-0.1051	EIF4A2	ENST00000323963	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_382458	chr3:38131595-38131638	-9.55	-0.3537	ACAA1	ENST00000333167	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_444499	chr5:138164086-138164133	-8.17	-0.2208	BRD8	ENST00000254900	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_446770	chr5:178215275-178215430	-17.79	-0.1458	PHYKPL	ENST00000308158	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_470226	chr7:103307595-103307708	-11.11	-0.2267	PMPCB	ENST00000249269	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_461111	chr6:90544551-90544632	-8.79	-0.1127	MAP3K7	ENST00000369329	In-frame
ENSG00000257605	ENST00000550263	exon_skip_5818	chr1:45568484-45568684	-16.82	-0.1007	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_19047	chr1:228148370-228148456	-12.34	-0.2128	GUK1	ENST00000312726,ENST00000366716,ENST00000366718,ENST00000366726,ENST00000366730	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_67681	chr11:893426-893519	-17.70	-0.2329	CHID1	ENST00000323578,ENST00000436108,ENST00000449825	In-frame
ENSG00000257605	ENST00000550263	exon_skip_140283	chr16:635611-635774	-22.38	-0.1776	METTL26	ENST00000301686	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_140339	chr16:635611-635774	-22.38	-0.1776	METTL26	ENST00000301686	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_374552	chr3:50104247-50104308	-10.69	-0.2056	RBM5	ENST00000347869	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_426593	chr4:152870752-152870848	-14.06	-0.1598	ARFIP1	ENST00000353617,ENST00000451320	In-frame
ENSG00000257605	ENST00000550263	exon_skip_69750	chr11:18083534-18083731	-12.39	-0.1318	SAAL1	ENST00000524803	Frame-shift
ENSG00000257605	ENST00000550263	exon_skip_508362	chr9:136676584-136676680	-15.83	-0.1930	AGPAT2	ENST00000371696,ENST00000538402	In-frame
ENSG00000257605	ENST00000550263	exon_skip_484062	chr8:73030335-73030395	-9.96	-3.3200	TERF1	ENST00000276603	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000257605	hsa-mir-194-1	ENST00000550263	chr12:53298950-53299039	186.00	-74.76	86	NA
ENSG00000257605	hsa-mir-194-1	ENST00000550263	chr12:53299066-53299154	177.00	-79.29	82	NA
ENSG00000257605	hsa-mir-194-1	ENST00000550263	chr12:53298859-53298960	158.00	-77.46	96	NA
ENSG00000257605	hsa-mir-194-1	ENST00000550263	chr12:53298678-53298766	156.00	-70.75	89	NA
ENSG00000257605	hsa-mir-194-2	ENST00000550263	chr12:53298704-53298798	162.00	-91.98	92	NA
ENSG00000257605	hsa-mir-194-2	ENST00000550263	chr12:53298924-53299013	156.00	-89.25	81	NA
ENSG00000257605	hsa-mir-194-2	ENST00000550263	chr12:53299048-53299133	142.00	-86.25	86	NA
ENSG00000257605	hsa-mir-30d	ENST00000550263	chr12:53298799-53298885	160.00	-65.42	82	NA
ENSG00000257605	hsa-mir-30d	ENST00000550263	chr12:53298697-53298769	157.00	-57.83	72	NA

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Variants for MYG1-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000257605	ENST00000550263	LARS2	ENSG00000011376	ENST00000414984	-0.2557	44	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	DAG1	ENSG00000173402	ENST00000435508	-0.3317	58	-	KIRC
ENSG00000257605	ENST00000550263	CIPC	ENSG00000198894	ENST00000555437	-0.1349	334	-	BLCA,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	CIPC	ENSG00000198894	ENST00000555611	-0.1338	312	-	BLCA,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	CCDC186	ENSG00000165813	ENST00000369287	-0.1696	1	-	KIRC
ENSG00000257605	ENST00000550263	PIK3C2A	ENSG00000011405	ENST00000265970	-0.1879	1	-	KIRP
ENSG00000257605	ENST00000550263	AP5M1	ENSG00000053770	ENST00000431972	-2.6650	522	-	KIRC
ENSG00000257605	ENST00000550263	USP46	ENSG00000109189	ENST00000508499	-0.2215	194	-	KIRC,KIRP
ENSG00000257605	ENST00000550263	USP46	ENSG00000109189	ENST00000512656	-0.2977	181	-	KIRC,KIRP
ENSG00000257605	ENST00000550263	KIAA1191	ENSG00000122203	ENST00000298569	-0.2736	1	-	KIRP
ENSG00000257605	ENST00000550263	KIAA1191	ENSG00000122203	ENST00000393725	-0.2736	1	-	KIRP
ENSG00000257605	ENST00000550263	KIAA1191	ENSG00000122203	ENST00000614420	-0.2736	1	-	KIRP
ENSG00000257605	ENST00000550263	KIAA1191	ENSG00000122203	ENST00000620366	-0.2736	1	-	KIRP
ENSG00000257605	ENST00000550263	KIAA1191	ENSG00000122203	ENST00000510164	-0.1174	316	-	KIRP
ENSG00000257605	ENST00000550263	KIAA1191	ENSG00000122203	ENST00000533553	-0.1333	304	-	KIRP
ENSG00000257605	ENST00000550263	NAPEPLD	ENSG00000161048	ENST00000341533	-0.1268	1	-	KIRC
ENSG00000257605	ENST00000550263	NAPEPLD	ENSG00000161048	ENST00000417955	-0.1268	1	-	KIRC
ENSG00000257605	ENST00000550263	NAPEPLD	ENSG00000161048	ENST00000465647	-0.1959	313	-	KIRC
ENSG00000257605	ENST00000550263	NAPEPLD	ENSG00000161048	ENST00000420631	-0.2696	327	-	KIRC
ENSG00000257605	ENST00000550263	SYNJ2BP	ENSG00000213463	ENST00000256366	-0.1714	1	-	KIRC,READ
ENSG00000257605	ENST00000550263	IQGAP2	ENSG00000145703	ENST00000502745	-0.1400	198	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	IQGAP2	ENSG00000145703	ENST00000513534	-0.1014	58	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000298687	-0.1306	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000350792	-0.1306	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000397858	-0.1329	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000557633	-0.1807	50	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000554104	-0.1314	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000555158	-0.1314	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000553503	-0.1314	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000397853	-0.1314	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000360463	-0.1314	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000556147	-0.1329	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000557353	-0.1329	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000554143	-0.1329	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000397851	-0.1329	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000397847	-0.1329	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000298684	-0.1425	1	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000397856	-0.1185	203	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000553593	-0.1277	163	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000555767	-0.1146	31	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000554379	-0.1535	76	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	NDRG2	ENSG00000165795	ENST00000557616	-0.1837	390	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	TMEM192	ENSG00000170088	ENST00000506087	-0.1407	1	-	CHOL
ENSG00000257605	ENST00000550263	ETFDH	ENSG00000171503	ENST00000511912	-0.2465	75	-	CHOL,COAD,READ
ENSG00000257605	ENST00000550263	ETFDH	ENSG00000171503	ENST00000307738	-0.1297	510	-	CHOL,COAD,READ
ENSG00000257605	ENST00000550263	ANKRD46	ENSG00000186106	ENST00000519316	-0.2010	199	-	CHOL,KIRP
ENSG00000257605	ENST00000550263	MARVELD2	ENSG00000152939	ENST00000436532	-0.1244	93	-	KIRC
ENSG00000257605	ENST00000550263	MARVELD2	ENSG00000152939	ENST00000413223	-0.1206	72	-	KIRC
ENSG00000257605	ENST00000550263	ABLIM1	ENSG00000099204	ENST00000440467	-0.3518	408	-	KIRC,BLCA
ENSG00000257605	ENST00000550263	NDUFS1	ENSG00000023228	ENST00000449699	-0.2114	70	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	NDUFS1	ENSG00000023228	ENST00000432169	-0.2114	70	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	NDUFS1	ENSG00000023228	ENST00000456284	-0.1183	41	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	ALAS1	ENSG00000023330	ENST00000484952	-0.1143	41	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	ALAS1	ENSG00000023330	ENST00000493402	-0.4869	119	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	L2HGDH	ENSG00000087299	ENST00000261699	-0.1497	370	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	L2HGDH	ENSG00000087299	ENST00000267436	-0.1526	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	L2HGDH	ENSG00000087299	ENST00000555423	-0.1524	169	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	DCAF11	ENSG00000100897	ENST00000446197	-0.1645	1	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	DCAF11	ENSG00000100897	ENST00000557802	-0.1645	1	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	DCAF11	ENSG00000100897	ENST00000560457	-0.1207	21	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	DCAF11	ENSG00000100897	ENST00000558706	-0.1281	81	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	DCAF11	ENSG00000100897	ENST00000557888	-0.1109	30	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	DCAF11	ENSG00000100897	ENST00000559144	-0.1195	291	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	SLC25A15	ENSG00000102743	ENST00000470509	-0.1087	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	LONP2	ENSG00000102910	ENST00000285737	-0.1652	1	-	CHOL
ENSG00000257605	ENST00000550263	LONP2	ENSG00000102910	ENST00000416006	-0.1200	240	-	CHOL
ENSG00000257605	ENST00000550263	MPDZ	ENSG00000107186	ENST00000536827	-0.1035	157	-	CHOL,BLCA
ENSG00000257605	ENST00000550263	MPDZ	ENSG00000107186	ENST00000546205	-0.4684	339	-	CHOL,BLCA
ENSG00000257605	ENST00000550263	ACBD5	ENSG00000107897	ENST00000375888	-0.1300	158	-	CHOL
ENSG00000257605	ENST00000550263	ALDH5A1	ENSG00000112294	ENST00000357578	-0.1516	1	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	ALDH5A1	ENSG00000112294	ENST00000491546	-0.1402	555	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	EHHADH	ENSG00000113790	ENST00000231887	-0.1322	1	-	CHOL,KIRP,COAD
ENSG00000257605	ENST00000550263	EPB41L5	ENSG00000115109	ENST00000331393	-0.1053	91	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	PCYOX1	ENSG00000116005	ENST00000433351	-0.3203	1	-	CHOL,KIRP
ENSG00000257605	ENST00000550263	PCYOX1	ENSG00000116005	ENST00000264441	-0.1784	161	-	CHOL,KIRP
ENSG00000257605	ENST00000550263	ACADM	ENSG00000117054	ENST00000420607	-0.8786	202	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	ACADM	ENSG00000117054	ENST00000528016	-0.1015	57	-	CHOL,KIRC,KIRP,COAD,READ
ENSG00000257605	ENST00000550263	IVD	ENSG00000128928	ENST00000479013	-0.3450	1	-	CHOL
ENSG00000257605	ENST00000550263	IVD	ENSG00000128928	ENST00000559575	-0.7043	304	-	CHOL
ENSG00000257605	ENST00000550263	STX17	ENSG00000136874	ENST00000525342	-0.1615	135	-	CHOL
ENSG00000257605	ENST00000550263	SORL1	ENSG00000137642	ENST00000525532	-0.8510	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	SORL1	ENSG00000137642	ENST00000532694	-0.8510	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	SORL1	ENSG00000137642	ENST00000534286	-0.8510	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	SORL1	ENSG00000137642	ENST00000527934	-0.8510	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	RDX	ENSG00000137710	ENST00000533678	-0.1256	147	-	CHOL,READ
ENSG00000257605	ENST00000550263	NADK2	ENSG00000152620	ENST00000506945	-0.1096	31	-	CHOL
ENSG00000257605	ENST00000550263	NADK2	ENSG00000152620	ENST00000502355	-0.1082	31	-	CHOL
ENSG00000257605	ENST00000550263	ACOX1	ENSG00000161533	ENST00000293217	-0.2033	1	-	CHOL,COAD
ENSG00000257605	ENST00000550263	ACOX1	ENSG00000161533	ENST00000588968	-0.1171	1	-	CHOL,COAD
ENSG00000257605	ENST00000550263	ACOX1	ENSG00000161533	ENST00000589301	-0.1348	1	-	CHOL,COAD
ENSG00000257605	ENST00000550263	PEX11A	ENSG00000166821	ENST00000300056	-0.1509	1	-	CHOL,COAD
ENSG00000257605	ENST00000550263	CLPX	ENSG00000166855	ENST00000300107	-0.1404	1	-	CHOL
ENSG00000257605	ENST00000550263	BTD	ENSG00000169814	ENST00000417015	-0.1097	1	-	CHOL,COAD
ENSG00000257605	ENST00000550263	BTD	ENSG00000169814	ENST00000449107	-0.1729	373	-	CHOL,COAD
ENSG00000257605	ENST00000550263	CES2	ENSG00000172831	ENST00000417689	-0.1449	1	-	CHOL,COAD,READ
ENSG00000257605	ENST00000550263	CES2	ENSG00000172831	ENST00000317091	-0.1449	1	-	CHOL,COAD,READ
ENSG00000257605	ENST00000550263	CES2	ENSG00000172831	ENST00000570032	-0.1026	239	-	CHOL,COAD,READ
ENSG00000257605	ENST00000550263	PCCA	ENSG00000175198	ENST00000413170	-0.1226	313	-	CHOL,KIRC
ENSG00000257605	ENST00000550263	C11orf54	ENSG00000182919	ENST00000528288	-0.1258	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	C11orf54	ENSG00000182919	ENST00000617482	-0.1172	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	C11orf54	ENSG00000182919	ENST00000540113	-0.1172	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	C11orf54	ENSG00000182919	ENST00000331239	-0.1172	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	C11orf54	ENSG00000182919	ENST00000528099	-0.1172	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	C11orf54	ENSG00000182919	ENST00000354421	-0.1172	1	-	CHOL,KIRC,KIRP
ENSG00000257605	ENST00000550263	PLS1	ENSG00000120756	ENST00000497002	-0.2358	528	-	COAD,READ
ENSG00000257605	ENST00000550263	NEO1	ENSG00000067141	ENST00000560262	-0.4325	46	-	COAD,READ
ENSG00000257605	ENST00000550263	NEO1	ENSG00000067141	ENST00000558964	-0.4325	46	-	COAD,READ
ENSG00000257605	ENST00000550263	SUN2	ENSG00000100242	ENST00000455125	-0.1006	116	-	CHOL,COAD
ENSG00000257605	ENST00000550263	SUN2	ENSG00000100242	ENST00000430185	-0.4360	536	-	CHOL,COAD
ENSG00000257605	ENST00000550263	PTPRF	ENSG00000142949	ENST00000412568	-0.1059	320	-	COAD
ENSG00000257605	ENST00000550263	ATP1A1	ENSG00000163399	ENST00000440951	-0.1338	105	-	KIRC,KIRP
ENSG00000257605	ENST00000550263	KIF13B	ENSG00000197892	ENST00000523130	-0.5962	120	-	KIRC,COAD,READ

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000257605	MYG1-AS1,hsa-mir-30d,RHEBL1	ACC,MESO,DLBC,UCS,THYM

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000257605.2	ENST00000550263.2	141	458	33

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential