Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000257596

Summary for SCAT2

Gene summary

Gene information	Ensembl ID	ENSG00000257596
	Gene symbol	SCAT2
	Gene name	S-phase cancer associated transcript 2
	HGNC	53976
	Entrez ID	112935960
	Gene type	antisense
	Synonyms	SCAT2\|12q13.13\|RP11-968A15.2
	UniProtAcc

Top

Structure and expression level for SCAT2

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000257596	2.775499e+01	2.571413e+00	5.103114e-01	5.038910e+00	4.680000e-07	3.280000e-06	UP	CHOL
ENSG00000257596	4.321481e+01	2.289897e+00	2.619390e-01	8.742102e+00	2.290000e-18	1.950000e-16	UP	BLCA
ENSG00000257596	7.141521e+01	2.535030e+00	6.092044e-01	4.161214e+00	3.170000e-05	4.668730e-04	UP	CESC
ENSG00000257596	2.210571e+01	1.409595e+00	2.414694e-01	5.837570e+00	5.300000e-09	2.980000e-08	UP	UCEC
ENSG00000257596	5.785989e+01	1.002565e+00	2.771760e-01	3.617071e+00	2.979560e-04	3.050233e-03	UP	ESCA

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000257596	5.454066e-01	1.068592e-04	CHOL	3.144236e-04
ENSG00000257596	3.482461e-01	1.028360e-05	ESCA	6.992850e-04

Top

lncRNA-Protein interaction for SCAT2

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000257596	ENST00000547177	RP11-968A15.2	ENSG00000256223	ZNF10	4.45	91.5988	P21506	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000257596	ENST00000547177	RP11-968A15.2	ENSG00000013573	DDX11	121.39	90.9026	Q96FC9	RBP	NA
ENSG00000257596	ENST00000547177	RP11-968A15.2	ENSG00000004534	RBM6	109.32	93.0259	P78332	RBP	NA
ENSG00000257596	ENST00000547177	RP11-968A15.2	ENSG00000139746	RBM26	91.07	93.2762	Q5T8P6	RBP	NA

Top

lncRNA-DNA interaction for SCAT2

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ARL16,VAMP1,SLIRP,NUP43,MCRS1,TMEM234,CENPK,PET100,FAM24B,SRP19,DMTF1,LMBR1L,CENATAC,SNRPA,ST7L,SMUG1,MSANTD2,CCDC14,CHKA,C6orf136,ZBED5,NDUFA3,PPIH,RABGGTB,RECQL4,TTC14,KNTC1,SUGP1,TAZ,RCCD1,RAB4B,CLK2,UQCC2,TARBP2,POLG2,RING1,CHKB,METTL17,WDR83,OSGEP,BLM,CLK1,GABPB1,NASP,ANKRD39,RPAIN,OFD1,ACYP1,HELLS,CFAP298,C19orf48,PFDN6,NAPB,ATP5MK,C3orf62,NEMP1,ORMDL1,FDX2,C12orf73,DONSON,AGER,BRIX1,PRPF38A,SRSF2,C1orf52,CDK11A,UBE2C,ATG4B,PAFAH1B3,DCUN1D2,FAM229A,PFDN5,CCS,HMGN3,FAM193B,CHEK1,NDUFB1,CENPH,PNKP,TMCO6,XPO1,ZFC3H1,KLHL17,ARHGAP33,DNASE1,VCPKMT,ORC6,CCDC34,ERCC5,CDCA3,TRIR,SCNM1,RTRAF,TEDC2,FANCL,GLI4,MRPL55,NDUFB8,C1orf159,PRR3,PPOX,NEMP2,PIF1,SASS6,INO80C,DDX55,MIX23,CAPN10,PFDN2,GLMN,FAM111A,METTL21A,FAM136A,THOC1,CCDC59,PCLAF,FANCA,INTS11,EZH2,TAMM41,PCBP2,ALKBH6,LTO1,PIDD1,CWC15,IFT80,CEP83,RFC4,UBN2,LRIG2,PCED1A,MRPS15,DYNLT2,ZC3H8,GNL2,ENOSF1,THOC6,ANKRD49,PAXBP1,PQBP1,PTTG1,COA1,FNBP4,CCHCR1,RSRP1,CLEC2D,TRPT1,SUMO2,TMPO,PTOV1,HAUS1,NDUFA12,DDX11,NDUFAF5,C2orf68,SPC24,PSMG2,NDUFAF7,TRMT13,KRTCAP2,KHDC1,POP5,UCKL1,PSME3IP1,NAP1L4,WDR27,UBXN11,EME2,PTCD1,KHDC4,CERS5,EP400P1,PNISR,GEN1,RP9,SFPQ,ZNF10,SRSF7,BLOC1S1,ATAT1,TAF11,PYM1,ZBTB8OS,TRMU,PARPBP,ATXN7L2,CHTF18,CEP57L1,TAF1D,C1orf35,CDK5RAP1,MARCHF9,BUD23,TBRG1,MIS18A,CCNL2,POLE2,ANKRD10,CCDC77,LSM5,DDTL,CCNT2,PTCD3,KAT2A,RAD1,TMEM223,CSTF3,RBM26,SNRPD3,XRCC2,PLA2G6,TMEM86B,RBM25,DPY30,POLI,AURKB,PRPF39,TMEM258,ERMARD,TMEM41B,GEMIN6,ZNF22,HDAC10,CEP44,HSF4,ARGLU1,ANKS3,YJEFN3,C10orf88,TAF10,HSPBAP1,YAE1,DYRK4,R3HDM2,CENPS,PMS1,PSMG4,PBX4,TIA1,ZNF83,C5orf34,PSMG3,MYL6B,IPO4,POLE,MYG1,DTX3,CSKMT,LUC7L,PNN,COA5,LUC7L2,CENPJ,DPH7,TRA2A,NSMCE4A,CEP131,DUS1L,HINFP,RBM33,IMMP1L,SRRT,AGAP6,RBM39,ODF2L,MRPS26,ZCCHC8,SNRPD2,PIGL,ERH,CSAD,RPS26,KIAA0895L,DDX39A,NDUFAF6,ATAD3B,HAUS8,MUTYH,BANF1,DCAF8,HJURP,FRA10AC1,OGA,PAN3,PHKG2,NARF,SARS2,SS18L2,PA2G4,CENPT,FAM76B,ANAPC7,GTPBP3,YAF2,RBM4B,SNRPB,VPS29,EXOG,TAF1C,ADAT2,TEFM,SAMD1,AAAS,HMGB2,SS18L1,HAUS5,MTRF1,UBXN1,MCM8,FBXL6,FAM216A,AUP1,ATAD5,WASHC1,TIGD1,KLC1,DNA2,GPS2,TRIM52,NOL12,CLASRP,TTC32,GOLGA8B,TMA7,GOLGA8A,EMC9,PAM16,PPHLN1,SETD4,TPRKB,AARSD1,DUSP28,NACA,NKTR,CEP162,RNASEH2C,TYMS,TTLL3,ZNF84,ATP5MC2,PARP6,WDR33,DXO,HSPB11,ANKRD13D,CCDC57

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

ANKRD39,SCNM1,TMCO6,FAM111A,EP400NL,COMMD3,CENPJ,SLC25A16,BANF1,PTCD1,METTL12,HAUS1,DYRK4,HAUS5,KIAA0907,C12orf45,KHDC1,AARSD1,FANCA,CBFB,AURKB,RBM6,EFHC1,ACCS,COX6A1,C2orf68,NT5C,USMG5,ARGLU1,NDUFB1,PBX4,ENOSF1,CEP44,MDM4,UBXN1,MRPL42,STX16

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

Only predicted by TDF

GNA11,CYB5R3

Exist in public source

Top

lncRNA-RNA interaction for SCAT2

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

UBC,FLII,RNH1,GNA11,CPQ,TMEM127,CYB5R3,SPRYD3,KIAA0513,SURF4,LRP10,MYH9

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000257596	ENST00000547177	exon_skip_353131	chr20:58669290-58669453	-15.94	-0.1172	STX16	ENST00000371141	Frame-shift
ENSG00000257596	ENST00000547177	exon_skip_382458	chr3:38131595-38131638	-9.38	-0.5518	ACAA1	ENST00000333167	Frame-shift
ENSG00000257596	ENST00000547177	exon_skip_30682	chr1:151310210-151310255	-6.24	-0.1418	PI4KB	ENST00000368873	In-frame
ENSG00000257596	ENST00000547177	exon_skip_290158	chr17:42953723-42953778	-8.19	-0.1606	AARSD1	ENST00000427569	Frame-shift
ENSG00000257596	ENST00000547177	exon_skip_476008	chr7:65970281-65970366	-10.21	-0.2002	GUSB	ENST00000304895	Frame-shift
ENSG00000257596	ENST00000547177	exon_skip_52891	chr10:98429790-98429889	-14.13	-0.1624	HPS1	ENST00000325103,ENST00000361490	In-frame
ENSG00000257596	ENST00000547177	exon_skip_123726	chr15:75339701-75339878	-18.55	-0.1174	COMMD4	ENST00000267935	In-frame
ENSG00000257596	ENST00000547177	exon_skip_358821	chr20:63943652-63943669	-4.93	-0.3081	UCKL1	ENST00000354216	Frame-shift
ENSG00000257596	ENST00000547177	exon_skip_380242	chr3:186784961-186785101	-15.42	-0.1224	EIF4A2	ENST00000323963	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for SCAT2

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000257596	ENSG00000004777	ARHGAP33	ACC,BLCA,CESC,CHOL,TGCT,THYM,UCEC,UCS	CHOL
ENSG00000257596	ENSG00000079462	PAFAH1B3	ACC,CESC,CHOL,ESCA,THYM,UCS	CESC,CHOL,ESCA
ENSG00000257596	ENSG00000091651	ORC6	ACC,CHOL,DLBC,ESCA,UCEC	CHOL,ESCA,UCEC
ENSG00000257596	ENSG00000100416	TRMU	ACC,BLCA,CHOL,DLBC,THYM,UCEC	UCEC
ENSG00000257596	ENSG00000100479	POLE2	ACC,DLBC,ESCA,LAML,OV,THYM,UCEC,UCS	ESCA,UCEC
ENSG00000257596	ENSG00000104835	SARS2	ACC,BLCA,CHOL,DLBC,ESCA,TGCT,THYM	BLCA
ENSG00000257596	ENSG00000108773	KAT2A	ACC,BLCA,CHOL,DLBC,TGCT,UCS	BLCA
ENSG00000257596	ENSG00000109881	CCDC34	ACC,CESC,CHOL,ESCA,THYM	CESC,CHOL,ESCA
ENSG00000257596	ENSG00000110721	CHKA	ACC,CHOL,DLBC,UCEC,UCS	UCEC
ENSG00000257596	ENSG00000111665	CDCA3	ACC,BLCA,CESC,CHOL,DLBC,TGCT,THYM	BLCA,CESC,CHOL
ENSG00000257596	ENSG00000117616	RSRP1	ACC,BLCA,CESC,CHOL,THYM,UCEC,UCS	BLCA,CESC
ENSG00000257596	ENSG00000123136	DDX39A	ACC,CHOL,DLBC,ESCA,TGCT,THYM	CHOL,ESCA
ENSG00000257596	ENSG00000123219	CENPK	ACC,CHOL,ESCA,LAML,OV,THYM,UCEC	CHOL,ESCA,UCEC
ENSG00000257596	ENSG00000123485	HJURP	ACC,CHOL,DLBC,TGCT,THYM	CHOL
ENSG00000257596	ENSG00000125835	SNRPB	ACC,CHOL,ESCA,THYM,UCS	CHOL,ESCA
ENSG00000257596	ENSG00000125885	MCM8	ACC,CHOL,ESCA,LAML,UCEC	CHOL,ESCA,UCEC
ENSG00000257596	ENSG00000127586	CHTF18	ACC,BLCA,CESC,CHOL,DLBC,ESCA,OV,TGCT,THYM,UCS	BLCA,CESC,CHOL,ESCA
ENSG00000257596	ENSG00000131351	HAUS8	ACC,CHOL,ESCA,TGCT,THYM	ESCA
ENSG00000257596	ENSG00000132680	KHDC4	ACC,BLCA,CESC,CHOL,DLBC,ESCA,LAML,OV,TGCT,UCEC,UCS	BLCA,CESC,CHOL
ENSG00000257596	ENSG00000137288	UQCC2	ACC,CESC,CHOL,ESCA,TGCT,THYM	CESC
ENSG00000257596	ENSG00000137343	ATAT1	ACC,BLCA,CHOL,ESCA,LAML,OV,THYM,UCS	BLCA,CHOL
ENSG00000257596	ENSG00000139546	TARBP2	ACC,BLCA,CESC,CHOL,DLBC,ESCA,THYM,UCS	BLCA
ENSG00000257596	ENSG00000139624	CERS5	ACC,BLCA,CHOL,ESCA,OV,UCS	CHOL
ENSG00000257596	ENSG00000142330	CAPN10	ACC,CHOL,DLBC,THYM,UCS	CHOL
ENSG00000257596	ENSG00000149554	CHEK1	ACC,DLBC,ESCA,LAML,THYM	ESCA
ENSG00000257596	ENSG00000149716	LTO1	ACC,BLCA,CHOL,DLBC,THYM,UCEC,UCS	CHOL
ENSG00000257596	ENSG00000153044	CENPH	ACC,CHOL,ESCA,LAML,THYM	CHOL,ESCA
ENSG00000257596	ENSG00000156873	PHKG2	ACC,BLCA,CESC,CHOL,ESCA,OV,TGCT,THYM,UCEC,UCS	CESC,UCEC
ENSG00000257596	ENSG00000158062	UBXN11	ACC,BLCA,CESC,CHOL,ESCA,OV,THYM,UCS	BLCA,CHOL
ENSG00000257596	ENSG00000159055	MIS18A	ACC,CHOL,DLBC,ESCA,THYM	ESCA
ENSG00000257596	ENSG00000161888	SPC24	ACC,CESC,CHOL,ESCA,THYM	CESC,CHOL,ESCA
ENSG00000257596	ENSG00000162062	TEDC2	ACC,CESC,CHOL,DLBC,ESCA,OV,THYM,UCS	CESC,CHOL,ESCA
ENSG00000257596	ENSG00000162650	ATXN7L2	ACC,BLCA,CHOL,DLBC,ESCA,THYM,UCEC,UCS	BLCA
ENSG00000257596	ENSG00000164104	HMGB2	ACC,CHOL,DLBC,ESCA,THYM,UCS	CHOL,ESCA
ENSG00000257596	ENSG00000164611	PTTG1	ACC,CESC,CHOL,ESCA,THYM	CESC,CHOL,ESCA
ENSG00000257596	ENSG00000166012	TAF1D	ACC,BLCA,CHOL,DLBC,ESCA,LAML,THYM,UCEC,UCS	CHOL
ENSG00000257596	ENSG00000166803	PCLAF	ACC,CESC,CHOL,ESCA,THYM	CESC,CHOL,ESCA
ENSG00000257596	ENSG00000168096	ANKS3	ACC,BLCA,CESC,CHOL,ESCA,UCEC,UCS	CHOL
ENSG00000257596	ENSG00000171960	PPIH	ACC,CHOL,DLBC,ESCA,THYM	CHOL
ENSG00000257596	ENSG00000172244	C5orf34	ACC,BLCA,DLBC,ESCA,LAML,THYM,UCEC	ESCA,UCEC
ENSG00000257596	ENSG00000175063	UBE2C	ACC,CESC,CHOL,DLBC,ESCA,TGCT,THYM,UCEC	CESC,CHOL,ESCA,UCEC
ENSG00000257596	ENSG00000175265	GOLGA8A	ACC,BLCA,CESC,CHOL,DLBC,ESCA,OV,TGCT,UCEC,UCS	BLCA,CESC
ENSG00000257596	ENSG00000175279	CENPS	ACC,BLCA,CESC,DLBC,ESCA,OV,TGCT,THYM,UCEC	CESC
ENSG00000257596	ENSG00000175334	BANF1	ACC,CESC,CHOL,ESCA,TGCT,THYM	ESCA
ENSG00000257596	ENSG00000177595	PIDD1	ACC,BLCA,CESC,CHOL,ESCA,THYM,UCS	CESC
ENSG00000257596	ENSG00000178999	AURKB	ACC,CHOL,ESCA,THYM,UCS	CHOL,ESCA
ENSG00000257596	ENSG00000184445	KNTC1	ACC,BLCA,CHOL,ESCA,LAML,OV,THYM,UCEC	BLCA,CHOL,ESCA,UCEC
ENSG00000257596	ENSG00000185480	PARPBP	ACC,DLBC,ESCA,LAML,THYM,UCEC	ESCA,UCEC
ENSG00000257596	ENSG00000197774	EME2	ACC,BLCA,CHOL,DLBC,UCEC,UCS	CHOL
ENSG00000257596	ENSG00000204305	AGER	ACC,BLCA,CHOL,TGCT,THYM,UCEC,UCS	CHOL
ENSG00000257596	ENSG00000214021	TTLL3	ACC,BLCA,CHOL,THYM,UCS	CHOL
ENSG00000257596	ENSG00000215252	GOLGA8B	ACC,BLCA,CESC,CHOL,DLBC,ESCA,OV,TGCT,THYM,UCEC,UCS	BLCA
ENSG00000257596	ENSG00000221978	CCNL2	ACC,BLCA,CHOL,DLBC,OV,THYM,UCEC,UCS	BLCA
ENSG00000257596	ENSG00000249115	HAUS5	ACC,BLCA,CESC,CHOL,DLBC,TGCT,THYM	CESC
ENSG00000257596	ENSG00000250067	YJEFN3	ACC,BLCA,CHOL,LAML,OV,UCEC,UCS	BLCA,CHOL
ENSG00000257596	ENSG00000273899	NOL12	ACC,BLCA,CHOL,DLBC,TGCT,THYM,UCEC	CHOL
ENSG00000257596	ENSG00000008324	SS18L2	BLCA,CESC,CHOL,ESCA,OV,THYM,UCEC	UCEC
ENSG00000257596	ENSG00000046651	OFD1	BLCA,CESC,CHOL,ESCA,LAML,UCEC	CHOL
ENSG00000257596	ENSG00000119640	ACYP1	BLCA,CESC,CHOL,DLBC,ESCA,LAML,OV,TGCT,THYM,UCEC,UCS	BLCA,CESC,CHOL
ENSG00000257596	ENSG00000119969	HELLS	BLCA,CHOL,DLBC,ESCA,LAML,OV,THYM,UCEC	BLCA,CHOL,ESCA,UCEC
ENSG00000257596	ENSG00000123415	SMUG1	BLCA,CESC,CHOL,DLBC,ESCA,OV	BLCA
ENSG00000257596	ENSG00000130299	GTPBP3	BLCA,CHOL,DLBC,THYM,UCS	BLCA
ENSG00000257596	ENSG00000138346	DNA2	BLCA,CHOL,ESCA,LAML,THYM,UCEC,UCS	BLCA,CHOL,ESCA,UCEC
ENSG00000257596	ENSG00000140451	PIF1	BLCA,DLBC,ESCA,OV,TGCT,THYM,UCEC,UCS	BLCA,ESCA,UCEC
ENSG00000257596	ENSG00000141858	SAMD1	BLCA,CHOL,DLBC,TGCT,THYM,UCS	CHOL
ENSG00000257596	ENSG00000143793	C1orf35	BLCA,CHOL,ESCA,OV,TGCT,UCS	BLCA
ENSG00000257596	ENSG00000151849	CENPJ	BLCA,CHOL,ESCA,THYM,UCEC	CHOL,ESCA
ENSG00000257596	ENSG00000156876	SASS6	BLCA,CHOL,ESCA,LAML,UCEC	BLCA,ESCA
ENSG00000257596	ENSG00000160124	MIX23	BLCA,DLBC,ESCA,LAML,THYM,UCEC,UCS	BLCA
ENSG00000257596	ENSG00000175455	CCDC14	BLCA,CHOL,ESCA,LAML,OV,THYM,UCEC,UCS	BLCA
ENSG00000257596	ENSG00000176208	ATAD5	BLCA,ESCA,LAML,THYM,UCEC	BLCA,ESCA,UCEC
ENSG00000257596	ENSG00000178295	GEN1	BLCA,CHOL,DLBC,LAML,TGCT,THYM,UCEC	BLCA,UCEC
ENSG00000257596	ENSG00000185917	SETD4	BLCA,CHOL,DLBC,ESCA,LAML,OV,UCEC,UCS	CHOL
ENSG00000257596	ENSG00000187741	FANCA	BLCA,CHOL,ESCA,LAML,THYM	BLCA,CHOL,ESCA
ENSG00000257596	ENSG00000187961	KLHL17	BLCA,CHOL,DLBC,TGCT,THYM,UCS	BLCA
ENSG00000257596	ENSG00000196584	XRCC2	BLCA,DLBC,LAML,THYM,UCEC	BLCA,UCEC
ENSG00000257596	ENSG00000197299	BLM	BLCA,DLBC,LAML,THYM,UCEC	BLCA,UCEC
ENSG00000257596	ENSG00000239382	ALKBH6	BLCA,CESC,ESCA,OV,THYM	BLCA,CESC
ENSG00000257596	ENSG00000139266	MARCHF9	CESC,CHOL,DLBC,ESCA,THYM,UCS	CHOL
ENSG00000257596	ENSG00000213185	FAM24B	CESC,CHOL,DLBC,ESCA,THYM,UCS	CHOL
ENSG00000257596	ENSG00000214756	CSKMT	CESC,CHOL,DLBC,ESCA,THYM,UCS	CHOL
ENSG00000257596	ENSG00000106462	EZH2	CHOL,ESCA,LAML,OV,THYM,UCEC,UCS	CHOL,ESCA,UCEC
ENSG00000257596	ENSG00000113460	BRIX1	CHOL,DLBC,ESCA,TGCT,UCEC	ESCA
ENSG00000257596	ENSG00000122417	ODF2L	CHOL,ESCA,LAML,THYM,UCEC	CHOL,ESCA
ENSG00000257596	ENSG00000143256	PFDN2	CHOL,DLBC,ESCA,TGCT,THYM	ESCA
ENSG00000257596	ENSG00000163156	SCNM1	CHOL,ESCA,TGCT,THYM,UCS	CHOL
ENSG00000257596	ENSG00000163918	RFC4	CHOL,DLBC,OV,THYM,UCEC	CHOL,UCEC
ENSG00000257596	ENSG00000166881	NEMP1	CHOL,ESCA,LAML,OV,UCEC	ESCA
ENSG00000257596	ENSG00000167747	C19orf48	CHOL,DLBC,ESCA,THYM,UCS	CHOL
ENSG00000257596	ENSG00000196465	MYL6B	CHOL,DLBC,ESCA,OV,THYM	CHOL

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000257596	ENSG00000256223	ZNF10	ENSG00000132680	KHDC4	5	BLCA,CHOL,DLBC,ESCA,UCEC
ENSG00000257596	ENSG00000256223	ZNF10	ENSG00000266967	AARSD1	5	BLCA,CHOL,DLBC,ESCA,UCEC
ENSG00000257596	ENSG00000256223	ZNF10	ENSG00000132199	ENOSF1	5	BLCA,CHOL,DLBC,ESCA,UCEC

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000257596	ENST00000547177	KIAA0513	ENSG00000135709	ENST00000562580	-0.3323	547	-	BLCA,ESCA
ENSG00000257596	ENST00000547177	KIAA0513	ENSG00000135709	ENST00000562564	-0.3900	267	-	BLCA,ESCA

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000257596.1	ENST00000547177.1	67	365	162

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential