Home

Download

Statistics

Landscape

Help

Contact

lncRNA: ENSG00000257303

Summary for CNPY2-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000257303
	Gene symbol	CNPY2-AS1
	Gene name	CNPY2 antisense RNA 1
	HGNC	55480
	Entrez ID
	Gene type	antisense
	Synonyms	RP11-977G19.11\|CNPY2-AS1\|12q13.3
	UniProtAcc

Top

Structure and expression level for CNPY2-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000257303	7.760248e+01	1.155624e+00	3.450046e-01	3.349591e+00	8.093100e-04	3.131996e-03	UP	GBM

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000257303	3.854762e-01	8.922589e-03	CHOL	1.062875e-02

Top

lncRNA-Protein interaction for CNPY2-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

Top

lncRNA-DNA interaction for CNPY2-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for CNPY2-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNOT1,TMEM87B,CAMSAP2,UBR3,SLC36A1,ARID1A,ADCY7,NRP2,ESYT2,BECN1,KPNA6,SHC1,TACC1,SNX6,UBR1,PCDHGC3,GNL3L,NOP9,UBXN7,ACTN1,EDEM1,EIF4G1,FCHO2,NLN,UBE4A,VPS26A,SPTLC2,NDEL1,SGTB,SEC24B,ITPRIPL2,XPR1,L2HGDH,LASP1,MRPL19,ATP2A2,GFPT1,ZDHHC20,NECAP1,MBTPS2,ANKRD50,NUMB,APAF1,ZEB2,CPEB4,ARHGAP23,MAFG,STRN,SLFN5,CTTNBP2NL,UBR4,SEC24D,SH3BP5,LRP10,NOCT,CDC27,IQGAP1,GIGYF2,EEA1,RFFL,CORO1C,BTBD10,SEC23A,STK24,AGPAT3,AFF4,CLCC1,ITSN2,SFXN3,MAP3K20,ASXL2,MAPK1,RNF169,PHF8,CLPX,FAM102B,SEC22B,RAB3GAP2,LDHA,HELZ2,MYOF,SCARB2,HSPG2,PDLIM5,MTDH,NDST1,NOTCH3,TENT4B,TNS1,C16orf70,NAMPT,ETS1,MYO1E,SAMD8,WNK1,WDR7,OSBPL8,MED13L,CEMIP2,FASN,ADAM9,SKI,KIAA0586,IGF2R,DDX60,ZCCHC14,ASAP1,ACTR2,DOCK9,NID2,ZC3H7B,GTF2A1,ABCA1,NFAT5,RHOT1,RAB3D,PLS1,MGRN1,H6PD,DYNC1H1,TMOD3,SETD7,ACTN4,CALU,SEC31A,ELF1,YME1L1,CYFIP1,UGGT1,VRK2,LSM12,ABCE1,ANO6,CAST,VCAN,CDC42BPB,BDP1,SH3PXD2B,F2R,USP14,TNFRSF10A,USP10,CKAP5,CTTN,AFAP1,OAS3,TCP11L1,ZNFX1,BAZ1A,EMC1,NOMO2

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000257303	ENST00000549860	exon_skip_382458	chr3:38131595-38131638	-7.66	-0.2253	ACAA1	ENST00000333167	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

Top

Variants for CNPY2-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000257303	ENST00000549565	USP32	ENSG00000170832	ENST00000300896	-0.1299	1	-	GBM
ENSG00000257303	ENST00000549565	USP32	ENSG00000170832	ENST00000590297	-0.1050	205	-	GBM
ENSG00000257303	ENST00000549565	NDEL1	ENSG00000166579	ENST00000585098	-0.3045	291	-	GBM
ENSG00000257303	ENST00000549565	NDEL1	ENSG00000166579	ENST00000582277	-0.1927	1	-	GBM
ENSG00000257303	ENST00000549565	C16orf70	ENSG00000125149	ENST00000569277	-0.1219	49	-	GBM
ENSG00000257303	ENST00000549565	FASN	ENSG00000169710	ENST00000306749	-0.1121	1	-	GBM
ENSG00000257303	ENST00000549860	USP32	ENSG00000170832	ENST00000590297	-0.1050	223	-	GBM
ENSG00000257303	ENST00000549860	NDEL1	ENSG00000166579	ENST00000585098	-0.3925	88	-	GBM
ENSG00000257303	ENST00000549860	FASN	ENSG00000169710	ENST00000580382	-0.1048	72	-	GBM
ENSG00000257303	ENST00000549565	CDC42BPB	ENSG00000198752	ENST00000361246	-0.1048	1	-	GBM
ENSG00000257303	ENST00000549565	SPTLC2	ENSG00000100596	ENST00000216484	-0.2178	1	-	GBM
ENSG00000257303	ENST00000549565	NOMO2	ENSG00000185164	ENST00000381474	-0.1946	15	-	GBM
ENSG00000257303	ENST00000549565	NOMO2	ENSG00000185164	ENST00000621364	-0.1946	15	-	GBM
ENSG00000257303	ENST00000549565	NOMO2	ENSG00000185164	ENST00000543392	-0.1946	15	-	GBM
ENSG00000257303	ENST00000549860	NOMO2	ENSG00000185164	ENST00000381474	-0.1355	68	-	GBM
ENSG00000257303	ENST00000549860	NOMO2	ENSG00000185164	ENST00000621364	-0.1289	64	-	GBM
ENSG00000257303	ENST00000549860	NOMO2	ENSG00000185164	ENST00000543392	-0.4364	75	-	GBM
ENSG00000257303	ENST00000549565	WDR7	ENSG00000091157	ENST00000589935	-0.1204	29	-	GBM
ENSG00000257303	ENST00000549565	MAPK1	ENSG00000100030	ENST00000398822	-0.1122	69	-	GBM
ENSG00000257303	ENST00000549565	SFXN3	ENSG00000107819	ENST00000489434	-0.1192	46	-	GBM
ENSG00000257303	ENST00000549860	WDR7	ENSG00000091157	ENST00000589935	-0.1463	31	-	GBM
ENSG00000257303	ENST00000549860	SFXN3	ENSG00000107819	ENST00000489434	-0.1089	48	-	GBM
ENSG00000257303	ENST00000549565	STRN	ENSG00000115808	ENST00000379213	-0.1791	258	-	GBM
ENSG00000257303	ENST00000549565	CAMSAP2	ENSG00000118200	ENST00000413307	-0.1300	126	-	GBM
ENSG00000257303	ENST00000549565	TENT4B	ENSG00000121274	ENST00000357464	-0.1188	1	-	GBM
ENSG00000257303	ENST00000549565	UBR4	ENSG00000127481	ENST00000375218	-0.1668	1	-	GBM
ENSG00000257303	ENST00000549860	STRN	ENSG00000115808	ENST00000379213	-0.1791	276	-	GBM
ENSG00000257303	ENST00000549860	CAMSAP2	ENSG00000118200	ENST00000413307	-0.2388	185	-	GBM
ENSG00000257303	ENST00000549860	CAMSAP2	ENSG00000118200	ENST00000447701	-0.1042	1	-	GBM
ENSG00000257303	ENST00000549860	SH3BP5	ENSG00000131370	ENST00000408919	-0.1065	1	-	GBM
ENSG00000257303	ENST00000549565	UBR3	ENSG00000144357	ENST00000439681	-0.1187	1	-	GBM
ENSG00000257303	ENST00000549565	BDP1	ENSG00000145734	ENST00000380675	-0.1141	72	-	GBM
ENSG00000257303	ENST00000549565	TACC1	ENSG00000147526	ENST00000519416	-0.1666	1	-	GBM
ENSG00000257303	ENST00000549565	TACC1	ENSG00000147526	ENST00000520615	-0.1666	1	-	GBM
ENSG00000257303	ENST00000549565	TACC1	ENSG00000147526	ENST00000518415	-0.1287	31	-	GBM
ENSG00000257303	ENST00000549565	TACC1	ENSG00000147526	ENST00000317827	-0.1666	1	-	GBM
ENSG00000257303	ENST00000549565	TACC1	ENSG00000147526	ENST00000276520	-0.1666	1	-	GBM
ENSG00000257303	ENST00000549565	TACC1	ENSG00000147526	ENST00000521866	-0.1287	317	-	GBM
ENSG00000257303	ENST00000549565	TACC1	ENSG00000147526	ENST00000518809	-0.1666	1	-	GBM
ENSG00000257303	ENST00000549565	SAMD8	ENSG00000156671	ENST00000372690	-0.2626	1	-	GBM
ENSG00000257303	ENST00000549565	SAMD8	ENSG00000156671	ENST00000542569	-0.2056	1	-	GBM
ENSG00000257303	ENST00000549565	SAMD8	ENSG00000156671	ENST00000372687	-0.2056	1	-	GBM
ENSG00000257303	ENST00000549860	TACC1	ENSG00000147526	ENST00000520340	-0.1238	25	-	GBM
ENSG00000257303	ENST00000549860	TACC1	ENSG00000147526	ENST00000521866	-0.1197	335	-	GBM
ENSG00000257303	ENST00000549565	ATP2A2	ENSG00000174437	ENST00000548169	-0.1344	7	-	GBM
ENSG00000257303	ENST00000549565	ATP2A2	ENSG00000174437	ENST00000553144	-0.6700	1	-	GBM
ENSG00000257303	ENST00000549565	DYNC1H1	ENSG00000197102	ENST00000360184	-0.1085	214	-	GBM
ENSG00000257303	ENST00000549565	ITSN2	ENSG00000198399	ENST00000449392	-0.1417	113	-	GBM
ENSG00000257303	ENST00000549860	ATP2A2	ENSG00000174437	ENST00000553144	-0.1045	90	-	GBM
ENSG00000257303	ENST00000549860	TCP11L1	ENSG00000176148	ENST00000531632	-0.1097	1	-	GBM
ENSG00000257303	ENST00000549860	ITSN2	ENSG00000198399	ENST00000449392	-0.1201	214	-	GBM

Top

lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

Top

lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000257303.1	ENST00000549565.1	103	505	194
ENSG00000257303.1	ENST00000549860.1	74	87	311

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential