 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | DDX11,E2F6,GPBP1,ZNF22,LSM5,SLIRP,PHAX,HMGN3,CPSF3,THYN1,NOP2,RBM48,TEAD4,PA2G4,MYPOP,PCBP2,NIP7,IMP3,NFYB,CSTF1,PARN,LSM4,PIN1,RBM4B,TRUB2,CSTF3,LSM1,KRR1,TIGD1,RNPS1,DDX51,ERAL1,TRA2A,RBM8A,SMYD3,THAP3,CWC15,UNC50,SRSF2,XPA,ARNT2,NR2C1,THOC7,SF3B6,PREB,TSN,LARP6,SAFB2,THOC1,LSM3,ZNF18,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF18,SRSF2,E2F6,PCBP2,FOXK2,DDX10,THAP3,ARNT2,SRP14,HSF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SF3A1,CIC | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000256537 | ENST00000622602 | exon_skip_353171 | chr20:58898940-58898985 | -18.80 | -0.6714 | GNAS | ENST00000371085,ENST00000371100 | In-frame | | ENSG00000256537 | ENST00000622602 | exon_skip_353172 | chr20:58898940-58898985 | -18.80 | -0.6714 | GNAS | ENST00000371085,ENST00000371100 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000256537 | ENST00000622602 | exon_skip_152672 | chr17:42540949-42541206 | -26.47 | -0.1063 | NAGLU | ENST00000225927 | Frame-shift | | ENSG00000256537 | ENST00000622602 | exon_skip_371367 | chr3:9697710-9697866 | -20.64 | -0.1367 | MTMR14 | ENST00000296003 | In-frame | | ENSG00000256537 | ENST00000622602 | exon_skip_5818 | chr1:45568484-45568684 | -29.61 | -0.1583 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000256537 | ENST00000622602 | exon_skip_6419 | chr1:51756319-51756358 | -9.07 | -0.7558 | OSBPL9 | ENST00000428468 | In-frame | | ENSG00000256537 | ENST00000622602 | exon_skip_462160 | chr6:127316449-127316502 | -8.48 | -0.2292 | ECHDC1 | ENST00000531967 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000256537 | ENSG00000170515 | PA2G4 | ENSG00000197111 | PCBP2 | 5 | CHOL,ESCA,LUAD,MESO,READ | | ENSG00000256537 | ENSG00000169740 | ZNF32 | ENSG00000041988 | THAP3 | 5 | CHOL,DLBC,HNSC,LIHC,THCA | | ENSG00000256537 | ENSG00000169740 | ZNF32 | ENSG00000140319 | SRP14 | 7 | CHOL,HNSC,KIRP,LIHC,PAAD,PRAD,THCA | | ENSG00000256537 | ENSG00000170515 | PA2G4 | ENSG00000140319 | SRP14 | 5 | CHOL,ESCA,LIHC,PCPG,THCA |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000256537.3 | ENST00000544420.2 | 67 | 70 | 273 | | ENSG00000256537.3 | ENST00000622602.1 | 96 | 27 | 317 |
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