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lncRNA: ENSG00000255737

Summary for AGAP2-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000255737
	Gene symbol	AGAP2-AS1
	Gene name	AGAP2 antisense RNA 1
	HGNC	48633
	Entrez ID	100130776
	Gene type	antisense
	Synonyms	12q14.1\|AGAP2-AS1
	UniProtAcc

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Structure and expression level for AGAP2-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000255737	9.866060e+02	2.887838e+00	6.896667e-01	4.187295e+00	2.820000e-05	1.619460e-04	UP	GBM
ENSG00000255737	4.259348e+02	2.427822e+00	3.689566e-01	6.580239e+00	4.700000e-11	6.460000e-10	UP	CHOL
ENSG00000255737	4.373920e+02	1.801572e+00	1.318101e-01	1.366794e+01	1.580000e-42	2.810000e-41	UP	KIRC
ENSG00000255737	1.660310e+02	-1.367577e+00	1.947715e-01	-7.021443e+00	2.200000e-12	1.780000e-11	DOWN	UCEC
ENSG00000255737	8.150503e+02	1.648691e+00	3.203326e-01	5.146809e+00	2.650000e-07	9.220000e-06	UP	ESCA
ENSG00000255737	8.724315e+02	2.037001e+00	4.783377e-01	4.258501e+00	2.060000e-05	4.852520e-04	UP	PCPG
ENSG00000255737	7.847378e+02	1.459751e+00	1.222196e-01	1.194368e+01	7.010000e-33	8.580000e-32	UP	LUSC
ENSG00000255737	2.477771e+02	1.100939e+00	1.544687e-01	7.127262e+00	1.020000e-12	7.490000e-12	UP	COAD
ENSG00000255737	2.292628e+02	1.051363e+00	2.672153e-01	3.934516e+00	8.340000e-05	6.436720e-04	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000255737	3.010593e-01	7.800023e-03	ACC	1.830944e-02
ENSG00000255737	4.854733e-01	7.239588e-04	CHOL	1.323586e-03
ENSG00000255737	-3.231773e-01	2.007700e-03	KICH	2.610010e-03
ENSG00000255737	3.999503e-01	9.283175e-25	KIRC	1.491939e-23
ENSG00000255737	-3.288297e-01	2.875122e-16	UCEC	3.901952e-15

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lncRNA-Protein interaction for AGAP2-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255737	ENST00000542466	AGAP2-AS1	ENSG00000132382	MYBBP1A	46.08	90.3839	Q9BQG0	Epi	NA
ENSG00000255737	ENST00000542466	AGAP2-AS1	ENSG00000167670	CHAF1A	47.84	91.8581	Q13111	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for AGAP2-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for AGAP2-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

KDM1B,IDH3A,TMEM170A,CLTC,PRKAR2A,NAPEPLD,LZIC,PLS1,MYO6,TGOLN2,SNX4,PIKFYVE,CNOT6L,CSDE1,REST,MIER3,PDPK1,PLEKHA7,ABCB7,HACD3,CHP1,LONP2,RANBP2,PPM1A,PPP2R1B,HIPK1,ELF1,CDC42SE2,FAM214A,PIK3CB,AFF1,SECISBP2L,CLYBL,UBE2D3,GCC2,GALK2,SIAE,UQCRC2,KIAA1109,VTI1B,COX18,ATPAF1,ITFG1,IFT88,ARFGEF1,OXNAD1,NCOA4,RCHY1,ETFDH,KIAA0232,CYB5A,UBE4A,EPS15,SLAIN2,AZI2,LYSMD3,GLYR1,FNDC3A,KANSL1L,ITSN2,CCSER2,HELQ,ASXL2,RNF14,NDUFS1,CDH1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000255737	ENST00000542466	exon_skip_444897	chr5:141588223-141588250	-10.60	-3.5333	DIAPH1	ENST00000389054	In-frame
ENSG00000255737	ENST00000542466	exon_skip_470719	chr7:117134123-117134192	-9.13	-0.1630	ST7	ENST00000265437	In-frame
ENSG00000255737	ENST00000542466	exon_skip_353171	chr20:58898940-58898985	-13.88	-0.8165	GNAS	ENST00000371085,ENST00000371100	In-frame
ENSG00000255737	ENST00000542466	exon_skip_21610	chr1:9737497-9737554	-8.69	-0.2897	CLSTN1	ENST00000377298	In-frame
ENSG00000255737	ENST00000542466	exon_skip_89259	chr12:2865354-2865399	-14.31	-0.5300	FOXM1	ENST00000359843	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000255737	ENST00000542466	exon_skip_40119	chr10:24494499-24494604	-16.14	-0.1968	KIAA1217	ENST00000376454	In-frame
ENSG00000255737	ENST00000542466	exon_skip_85538	chr12:71894324-71894375	-10.54	-0.3100	TBC1D15	ENST00000550746	In-frame
ENSG00000255737	ENST00000542466	exon_skip_153096	chr17:44074968-44075087	-20.13	-0.1721	G6PC3	ENST00000269097	Frame-shift
ENSG00000255737	ENST00000542466	exon_skip_305632	chr19:35262545-35262692	-26.97	-0.1998	LSR	ENST00000361790	In-frame
ENSG00000255737	ENST00000542466	exon_skip_461111	chr6:90544551-90544632	-22.32	-0.3235	MAP3K7	ENST00000369329	In-frame
ENSG00000255737	ENST00000542466	exon_skip_489377	chr8:38429681-38429948	-36.80	-0.1466	FGFR1	ENST00000447712	In-frame
ENSG00000255737	ENST00000542466	exon_skip_60345	chr11:63903985-63904147	-26.41	-0.1761	MARK2	ENST00000402010	In-frame
ENSG00000255737	ENST00000542466	exon_skip_98384	chr12:124327408-124327633	-29.75	-0.1352	NCOR2	ENST00000405201	In-frame
ENSG00000255737	ENST00000542466	exon_skip_319500	chr19:45413962-45414034	-12.10	-0.2630	ERCC1	ENST00000300853,ENST00000589165	In-frame
ENSG00000255737	ENST00000542466	exon_skip_456460	chr6:17771113-17771218	-19.87	-0.4055	KIF13A	ENST00000259711	In-frame
ENSG00000255737	ENST00000542466	exon_skip_507438	chr9:128267193-128267274	-12.37	-0.1606	GOLGA2	ENST00000421699	In-frame
ENSG00000255737	ENST00000542466	exon_skip_44853	chr10:104010815-104010908	-18.74	-0.3470	SLK	ENST00000369755	In-frame
ENSG00000255737	ENST00000542466	exon_skip_76520	chr11:85990249-85990399	-13.75	-0.1165	PICALM	ENST00000393346	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000255737	hsa-mir-29c	ENST00000542466	chr12:57727436-57727534	213.00	-76.33	93	NA
ENSG00000255737	hsa-mir-29c	ENST00000542466	chr12:57727583-57727668	171.00	-76.75	62	NA
ENSG00000255737	hsa-mir-29c	ENST00000542466	chr12:57726272-57726350	156.00	-72.82	83	NA
ENSG00000255737	hsa-mir-29c	ENST00000542466	chr12:57726380-57726465	156.00	-81.45	84	NA
ENSG00000255737	hsa-mir-29c	ENST00000542466	chr12:57726699-57726785	142.00	-68.20	90	NA
ENSG00000255737	hsa-mir-29c	ENST00000542466	chr12:57726455-57726538	141.00	-81.51	79	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57727452-57727556	242.00	-96.72	101	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57727352-57727446	195.00	-88.11	95	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57727096-57727178	192.00	-91.10	91	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57727674-57727771	174.00	-69.10	94	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57726609-57726700	172.00	-90.79	95	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57726841-57726936	169.00	-93.20	96	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57726427-57726525	159.00	-101.66	97	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57727198-57727299	159.00	-85.22	100	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57726697-57726788	153.00	-80.92	89	NA
ENSG00000255737	hsa-mir-30e	ENST00000542466	chr12:57726523-57726610	151.00	-97.88	90	NA
ENSG00000255737	hsa-mir-148a	ENST00000542466	chr12:57727148-57727223	171.00	-66.49	58	NA
ENSG00000255737	hsa-mir-148a	ENST00000542466	chr12:57727435-57727501	154.00	-54.08	56	NA
ENSG00000255737	hsa-mir-148a	ENST00000542466	chr12:57727337-57727400	144.00	-51.87	63	NA

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Variants for AGAP2-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000255737	ENST00000542466	ABCD3	ENSG00000117528	ENST00000315713	-0.1930	1203	-	CHOL,KIRC,COAD,READ
ENSG00000255737	ENST00000542466	PPP2R1B	ENSG00000137713	ENST00000311129	-0.1888	96	-	CHOL
ENSG00000255737	ENST00000542466	PPP2R1B	ENSG00000137713	ENST00000426998	-0.1795	96	-	CHOL
ENSG00000255737	ENST00000542466	PPP2R1B	ENSG00000137713	ENST00000393055	-0.1699	883	-	CHOL
ENSG00000255737	ENST00000542466	SECISBP2L	ENSG00000138593	ENST00000561428	-0.1895	875	-	GBM,ESCA,LUSC,READ
ENSG00000255737	ENST00000542466	MIER3	ENSG00000155545	ENST00000451637	-0.1398	60	-	COAD,READ
ENSG00000255737	ENST00000542466	CYB5A	ENSG00000166347	ENST00000397914	-0.1743	115	-	CHOL,ESCA,LUSC
ENSG00000255737	ENST00000542466	ETFDH	ENSG00000171503	ENST00000307738	-0.1422	1303	-	CHOL,ESCA,PCPG,COAD,READ
ENSG00000255737	ENST00000542466	PLS1	ENSG00000120756	ENST00000497002	-0.1729	1308	UCEC	COAD,READ
ENSG00000255737	ENST00000542466	NDUFS1	ENSG00000023228	ENST00000449699	-0.1624	247	-	CHOL,KIRC,PCPG
ENSG00000255737	ENST00000542466	NDUFS1	ENSG00000023228	ENST00000432169	-0.1624	247	-	CHOL,KIRC,PCPG
ENSG00000255737	ENST00000542466	CDC42SE2	ENSG00000158985	ENST00000502582	-0.1213	511	-	READ
ENSG00000255737	ENST00000542466	NAPEPLD	ENSG00000161048	ENST00000420631	-0.1144	548	-	GBM,KIRC
ENSG00000255737	ENST00000542466	NCOA4	ENSG00000266412	ENST00000579039	-0.1066	143	-	CHOL,COAD,READ
ENSG00000255737	ENST00000542466	KIAA1109	ENSG00000138688	ENST00000419325	-0.1105	667	-	GBM,LUSC
ENSG00000255737	ENST00000542466	KIAA1109	ENSG00000138688	ENST00000442707	-0.5471	313	-	GBM,LUSC
ENSG00000255737	ENST00000542466	LYSMD3	ENSG00000176018	ENST00000453259	-0.1331	96	-	CHOL,LUSC
ENSG00000255737	ENST00000542466	MYO6	ENSG00000196586	ENST00000627432	-0.1522	1231	UCEC	KIRC
ENSG00000255737	ENST00000542466	HACD3	ENSG00000074696	ENST00000565299	-0.1058	733	-	KIRC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000255737	AGAP2-AS1,hsa-mir-29c,CHEK1	KICH,CHOL,ACC,GBM,MESO
ENSG00000255737	AGAP2-AS1,hsa-mir-29c,BMP1	KICH,CHOL,ACC,GBM,MESO
ENSG00000255737	AGAP2-AS1,hsa-mir-29c,MCM7	KICH,CHOL,ACC,GBM,MESO
ENSG00000255737	AGAP2-AS1,hsa-mir-29c,AURKA	KICH,CHOL,ACC,GBM,MESO
ENSG00000255737	AGAP2-AS1,hsa-mir-29c,CHAF1A	KICH,CHOL,ACC,GBM,MESO
ENSG00000255737	AGAP2-AS1,hsa-mir-29c,REEP4	KICH,CHOL,ACC,GBM,MESO
ENSG00000255737	AGAP2-AS1,hsa-mir-29c,FEN1	KICH,CHOL,ACC,GBM,MESO
ENSG00000255737	AGAP2-AS1,hsa-mir-29c,E2F1	KICH,CHOL,ACC,GBM,MESO
ENSG00000255737	AGAP2-AS1,hsa-mir-29c,NCKAP5L	KICH,CHOL,ACC,GBM,MESO
ENSG00000255737	AGAP2-AS1,hsa-mir-148a,ITGB1	CHOL,GBM,MESO,THYM,LIHC
ENSG00000255737	AGAP2-AS1,hsa-mir-148a,THBS2	CHOL,GBM,MESO,THYM,LIHC
ENSG00000255737	AGAP2-AS1,hsa-mir-148a,SLC39A6	CHOL,GBM,MESO,THYM,LIHC
ENSG00000255737	AGAP2-AS1,hsa-mir-148a,GPR107	CHOL,GBM,MESO,THYM,LIHC
ENSG00000255737	AGAP2-AS1,hsa-mir-148a,BICD2	CHOL,GBM,MESO,THYM,LIHC
ENSG00000255737	AGAP2-AS1,hsa-mir-148a,CERCAM	CHOL,GBM,MESO,THYM,LIHC
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,UGGT2	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ITGA5	KICH,TGCT,CHOL,MESO,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,THBS2	KICH,TGCT,CHOL,MESO,PAAD,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,CKAP4	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,THBS3	KICH,TGCT,CHOL,MESO,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,CNN1	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,TPM1	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,COL1A1	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,SERPINH1	KICH,TGCT,CHOL,MESO,PAAD,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,P3H4	KICH,TGCT,CHOL,MESO,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,TAGLN	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,SHISA4	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ANXA2	KICH,TGCT,CHOL,MESO,PAAD,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,PAWR	KICH,TGCT,CHOL,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ARAP3	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ITGB1	KICH,CHOL,MESO,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,COL5A1	KICH,TGCT,CHOL,MESO,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,MXRA8	KICH,TGCT,CHOL,MESO,PAAD
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ANXA5	KICH,TGCT,CHOL,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,MXRA5	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,VMP1	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,COL3A1	KICH,TGCT,CHOL,MESO,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ITGA11	KICH,TGCT,CHOL,MESO,PAAD
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ITGA3	KICH,TGCT,CHOL,PAAD,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,PXDN	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,BCL9L	KICH,TGCT,CHOL,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,DTD1	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,PTTG1IP	KICH,CHOL,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,MARVELD1	KICH,TGCT,CHOL,PAAD,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,CTHRC1	KICH,TGCT,CHOL,MESO,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,DCBLD1	KICH,TGCT,CHOL,MESO,PAAD
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,MMP14	KICH,TGCT,CHOL,MESO,PAAD,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ACTA2	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,KDELR3	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,SPARC	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,P3H3	KICH,TGCT,CHOL,MESO,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,LOX	KICH,TGCT,CHOL,MESO,PAAD,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,TAGLN2	KICH,TGCT,CHOL,MESO,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,COL4A2	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,TIMP2	KICH,TGCT,CHOL,MESO,PAAD
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,COL12A1	KICH,TGCT,CHOL,MESO,PAAD
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,COL1A2	KICH,TGCT,CHOL,MESO,PAAD,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,EXT1	KICH,TGCT,CHOL,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,FAM114A1	TGCT,CHOL,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,LAMB3	KICH,TGCT,CHOL,PAAD,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,POSTN	KICH,TGCT,CHOL,MESO,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,DPYSL3	KICH,TGCT,CHOL,MESO,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,CERCAM	KICH,TGCT,CHOL,MESO,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,COL5A2	KICH,TGCT,CHOL,MESO,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ADAMTS2	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,CDC42EP3	KICH,TGCT,CHOL,MESO,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,CNN2	KICH,TGCT,CHOL,MESO,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,LUM	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,RAI14	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,FN1	KICH,TGCT,CHOL,MESO,PAAD,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,LGALS1	KICH,TGCT,CHOL,MESO,PAAD
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,PMEPA1	KICH,TGCT,CHOL,MESO,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,TLCD3A	KICH,TGCT,CHOL,MESO,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,INHBA	KICH,TGCT,CHOL,MESO,PAAD
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,FBN1	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ARF4	KICH,TGCT,CHOL,MESO,PAAD,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,P4HA1	KICH,TGCT,CHOL,MESO,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,ADAM9	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,NUAK1	KICH,TGCT,CHOL,MESO,PAAD,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,CD276	TGCT,CHOL,MESO,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,RCN1	KICH,TGCT,CHOL,MESO,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,NRP2	KICH,TGCT,CHOL,MESO,PAAD
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,S100A16	KICH,TGCT,CHOL,MESO,THYM
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,FKBP10	KICH,TGCT,CHOL,MESO,PAAD
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,SMIM3	KICH,TGCT,CHOL,MESO,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,CALU	KICH,CHOL,MESO,PAAD,THYM,KIRP
ENSG00000255737	AGAP2-AS1,hsa-mir-30e,LOXL2	KICH,CHOL,MESO,PAAD,THYM

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000255737.2	ENST00000542466.2	92	668	390

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential