 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CNOT4,STAU1,QKI,CEBPZ,AEBP2,TET2,RFX7,TCF20,FOXJ3,NOP9,RC3H1,SMAD4,TET3,AGO4,FOXK1,NR2C2,FOXN2,TERF1,SON,DHX8,KDM5B,FOXO3,ASCC1,BBX,CPEB4,ZNF25,ADNP,SP100,PHF20,G3BP1,NCBP1,TFCP2,SART3,STAT3,AGO1,ARNT,KLF7,DDX6,DNMT1,CTCF,BPTF,ATF2,NCOA2,DDX3X,XPO1,SLTM,KLF13,SMAD1,BAZ2A,CASC3,LARP4,TEAD1,ZBED6,ASH1L,PRR12,DDX24,RREB1,FOXN3,PUM2,CNOT6,XRN1,NFKB1,SF3A1,RBM41,ADNP2,KAT7,SP1,DDX60,KMT2A,KDM2A,SYNJ1,AQR,RBM7,STAT1,NFAT5,GTF2I,PLS1,SMAD5,REST,HBP1,LARP7,ELF1,MECP2,DDX42,AGO2,LSM11,THOC2,CPSF2,ATF1,ADAT1,SRCAP | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000255198 | ENST00000564014 | exon_skip_503159 | chr9:32558909-32558954 | -7.22 | -0.2674 | NDUFB6 | ENST00000379847 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000255198 | ENST00000564014 | exon_skip_20543 | chr1:1712263-1712400 | -22.97 | -0.1838 | CDK11A | ENST00000378633 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_324294 | chr2:27774423-27774530 | -11.93 | -0.1340 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_360302 | chr21:42896926-42897047 | -12.86 | -0.1261 | NDUFV3 | ENST00000340344 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_514339 | chrX:23713134-23713208 | -8.05 | -0.1150 | ACOT9 | ENST00000336430 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_95500 | chr12:96003837-96003920 | -9.34 | -0.1213 | LTA4H | ENST00000228740 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_445390 | chr5:150403120-150403312 | -22.36 | -0.1308 | CD74 | ENST00000009530 | In-frame | | ENSG00000255198 | ENST00000564014 | exon_skip_29583 | chr1:114780109-114780215 | -9.91 | -0.1287 | SIKE1 | ENST00000060969 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_41813 | chr10:68337857-68337996 | -17.35 | -0.1335 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_87733 | chr12:120571190-120571291 | -11.57 | -0.1585 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_90104 | chr12:10709907-10710114 | -31.34 | -0.1812 | YBX3 | ENST00000228251 | In-frame | | ENSG00000255198 | ENST00000564014 | exon_skip_92074 | chr12:50142052-50142110 | -5.41 | -0.2081 | CERS5 | ENST00000317551 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_97655 | chr12:120579773-120579923 | -11.44 | -0.1707 | POP5 | ENST00000357500 | In-frame | | ENSG00000255198 | ENST00000531523 | exon_skip_127618 | chr15:58890280-58890461 | -13.51 | -0.1008 | SLTM | ENST00000380516 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_137309 | chr16:66558189-66558348 | -13.48 | -0.1204 | CKLF | ENST00000264001 | In-frame | | ENSG00000255198 | ENST00000564014 | exon_skip_313557 | chr19:5786748-5786845 | -17.62 | -0.1895 | DUS3L | ENST00000309061 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_319223 | chr19:43526200-43526349 | -20.15 | -0.1527 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_326885 | chr2:74490024-74490127 | -17.64 | -0.1764 | TTC31 | ENST00000233623 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_356108 | chr20:34740362-34743341 | -44.68 | -0.1100 | NCOA6 | ENST00000359003,ENST00000374796 | In-frame | | ENSG00000255198 | ENST00000564014 | exon_skip_370518 | chr22:50247691-50247776 | -12.78 | -0.2130 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_377198 | chr3:123130479-123130616 | -20.08 | -0.1521 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_380242 | chr3:186784961-186785101 | -13.87 | -0.1027 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_382458 | chr3:38131595-38131638 | -8.21 | -0.2415 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_426982 | chr4:163515312-163515461 | -23.66 | -0.1690 | TMA16 | ENST00000358572 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_430434 | chr4:82356536-82356683 | -13.71 | -0.1016 | HNRNPD | ENST00000313899 | In-frame | | ENSG00000255198 | ENST00000564014 | exon_skip_436035 | chr5:79656957-79657001 | -5.80 | -0.3412 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_466137 | chr7:48103296-48103411 | -17.29 | -0.1782 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_470226 | chr7:103307595-103307708 | -9.34 | -0.1394 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_476549 | chr7:76013741-76013887 | -20.58 | -0.1429 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_511212 | chrX:71555189-71555385 | -18.75 | -0.1157 | OGT | ENST00000373719 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_132574 | chr16:2528649-2528718 | -17.15 | -0.2680 | AMDHD2 | ENST00000293971 | In-frame | | ENSG00000255198 | ENST00000564014 | exon_skip_358606 | chr20:63202286-63203807 | -50.68 | -0.1088 | YTHDF1 | ENST00000370339 | In-frame | | ENSG00000255198 | ENST00000531523 | exon_skip_104545 | chr13:102767272-102767478 | -13.03 | -0.1649 | TEX30 | ENST00000376032 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_348333 | chr20:409880-410025 | -24.54 | -0.2080 | RBCK1 | ENST00000356286 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_5818 | chr1:45568484-45568684 | -22.11 | -0.1812 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_96024 | chr12:109090008-109090207 | -22.34 | -0.1277 | ALKBH2 | ENST00000343075,ENST00000429722 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_303345 | chr19:17227839-17228005 | -21.25 | -0.1426 | OCEL1 | ENST00000215061 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_374469 | chr3:49967469-49968748 | -39.92 | -0.1008 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_476535 | chr7:76000889-76001002 | -19.52 | -0.1807 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_374375 | chr3:49675182-49675309 | -19.30 | -0.1532 | APEH | ENST00000296456 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_382100 | chr3:25720013-25720191 | -14.28 | -0.1020 | NGLY1 | ENST00000280700 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_52895 | chr10:98431130-98431291 | -22.45 | -0.1403 | HPS1 | ENST00000325103,ENST00000361490 | Frame-shift | | ENSG00000255198 | ENST00000531523 | exon_skip_99140 | chr12:132729678-132730270 | -27.98 | -0.1110 | ANKLE2 | ENST00000357997 | Frame-shift | | ENSG00000255198 | ENST00000564014 | exon_skip_152672 | chr17:42540949-42541206 | -27.80 | -0.1086 | NAGLU | ENST00000225927 | Frame-shift | | ENSG00000255198 | ENST00000531523 | exon_skip_5861 | chr1:45607320-45608337 | -28.28 | -0.1113 | NASP | ENST00000350030 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | | ENSG00000255198 | SNHG9 | rs11642940:2008533:C:T | 1 | PRAD | 0 | | | ENSG00000255198 | SNHG9 | rs4786902:2010857:A:T:- | 0 | | 2 | PRAD,HNSC |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000255198.4 | ENST00000531523.1 | 76 | 234 | 464 | | ENSG00000255198.4 | ENST00000564014.1 | 38 | 17 | 133 |
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