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lncRNA: ENSG00000255197

Summary for RP11-750H9.5

Gene summary

Gene information	Ensembl ID	ENSG00000255197
	Gene symbol	RP11-750H9.5
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-750H9.5

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000255197	8.816050e+01	-2.390137e+00	1.653949e-01	-1.445109e+01	2.470000e-47	5.440000e-46	DOWN	LUSC
ENSG00000255197	9.619746e+01	-1.600417e+00	1.422413e-01	-1.125142e+01	2.280000e-29	4.320000e-28	DOWN	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000255197	-3.178100e-01	3.216584e-15	LUAD	4.886470e-14
ENSG00000255197	-3.036768e-01	3.921082e-13	LUSC	7.945958e-12

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lncRNA-Protein interaction for RP11-750H9.5

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255197	ENST00000527426	RP11-750H9.5	ENSG00000167548	KMT2D	46.26	92.5958	O14686	Epi	NA
ENSG00000255197	ENST00000527426	RP11-750H9.5	ENSG00000095787	WAC	41.79	90.3914	Q9BTA9	Epi	NA
ENSG00000255197	ENST00000527426	RP11-750H9.5	ENSG00000163635	ATXN7	37.48	92.8528	O15265	Epi	NA
ENSG00000255197	ENST00000532340	RP11-750H9.5	ENSG00000149311	ATM	51.99	90.9425	Q13315	Epi	NA
ENSG00000255197	ENST00000527426	RP11-750H9.5	ENSG00000080503	SMARCA2	77.77	90.8554	P51531	Epi	NA
ENSG00000255197	ENST00000527426	RP11-750H9.5	ENSG00000165671	NSD1	65.0	90.163	Q96L73	Epi	NA
ENSG00000255197	ENST00000527426	RP11-750H9.5	ENSG00000143970	ASXL2	52.95	91.005	Q76L83	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255197	ENST00000527426	RP11-750H9.5	ENSG00000106948	AKNA	44.12	91.7845	Q7Z591	TF	NA
ENSG00000255197	ENST00000527426	RP11-750H9.5	ENSG00000116016	EPAS1	41.75	90.3294	Q99814	TF	NA
ENSG00000255197	ENST00000527426	RP11-750H9.5	ENSG00000148516	ZEB1	38.73	92.2907	P37275	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for RP11-750H9.5

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

FRMD4B,TMEM119,MGAT4A,SAMHD1,SEC22B,SIRPB2,XRN1,MYCBP2,SPATA13,MAST3,IL6ST,TAB2,NDST1,CAPZA1,CDH11,RPS6KA3,TANK,MKNK1,SLF2,ANKRD44,DCK,CD69,CALHM6,PARP9,SIDT2,CLEC10A,ASCC3,UBE4A,IRAK4,STAT2,RFTN1,IL1B,COTL1,PEA15,TMC8,KAT6A,SPI1,ARAP2,GIMAP7,HK3,GNG10,INPP5B,CD37,DOK1,SCAMP2,ALDH3B1,HCK,CREB1,TNFSF8,SH3BP1,CD74,CNN3,GIT2,TMEM106A,MAP3K5,SIGLEC7,MLKL,RGS19,CLCN6,PSAP,NOD1,TM6SF1,SKAP2,FPR3,RNF19A,CLIC2,JAK3,MBD2,ZNFX1,FLI1,SELENOP,IKBKG,BACE1,MFSD1,EDEM1,ATXN7,IL12RB1,PEAK1,DRAM1,RFX7,TREM2,HCFC2,CD84,TBC1D9B,PURA,KDM7A,GMIP,MIER1,RASGRP1,SLC7A7,NPAT,HCLS1,RRM2B,ARID1A,PRKAR2A,CTDSP2,GNAI2,MAP3K14,MIS18BP1,HLA-DRB5,HEG1,KLF10,SAMSN1,LPCAT2,DOCK10,ANKRD22,C9orf72,BIN2,HLA-DMA,ACSL4,FKBP15,BACH1,HPS5,SECISBP2L,NFAM1,CXCL16,FCMR,PHC3,F2R,DPYD,DOK3,CMKLR1,AIDA,CTSZ,ZZEF1,CPVL,EPSTI1,TFEC,RNF111,C6orf62,NR2C2,IL18,TMEM127,IRAG2,KCTD12,TLR1,CD72,MAN2B1,TMEM273,FAM114A2,AOAH,CYRIA,LRP10,PCDH12,CXCR3,HIC1,EGR2,MAN2A1,GRK3,TAGAP,PILRA,HLA-DQB2,ENG,LPAR5,MAN1A2,MANEA,CCNT1,HIPK1,TIFA,ARHGEF11,SIK3,PIK3C2A,SEC24C,NACC2,EPB41L3,ATF7IP,PIP4K2A,MAF,FMNL3,HLA-DMB,EHD4,MEF2D,IKZF3,GCA,OLFML2B,PLBD2,RCHY1,TRIM14,SH3PXD2A,MOSPD2,A2M,RNF214,CCR1,FCER1G,ATM,PTK2B,LUZP1,SNX19,DENND5A,STK17B,NCOA4,TNFSF10,IQGAP1,KLF7,CDC42SE1,DCLRE1B,ACTR3,LRRC8C,WDR81,SAMD9,SLFN12,RAP2C,RSBN1,LITAF,CYB561A3,ROBO1,C16orf54,SAMD8,NHLRC3,SMCR8,CNOT6L,CRLF3,LILRB2,RASAL3,MXRA5,RASSF2,IPMK,GBP3,ARHGAP18,TNFAIP3,C1QB,ZDHHC7,ZNF25,SMPDL3A,ACAP2,LPXN,ASAH1,SWAP70,WARS1,AKNA,RIPK3,LRRC25,SDC3,WAPL,IFNGR1,C1QC,ARHGAP27,TMED5,TNKS2,ZZZ3,CD8A,PRF1,RAPGEF1,FOXP3,RELL1,OSBPL8,CD48,PIK3AP1,CBLB,SETX,NCKAP1L,SMG1,LRP1,LCP2,CD93,TRAF1,FGR,PLA2G7,ATP7A,SEMA4D,SLC35B4,FNBP1,LPAR1,HPGDS,GBGT1,SIGLEC9,CTBS,PHTF1,TBC1D9,CRYBG1,ELMO1,NFIC,NATD1,RNF135,BMP2K,RBM47,ATP11C,NAAA,TASL,EVC,SNAP23,FILIP1L,TRPM2,CREBRF,FOXN3,ABHD15,CIITA,KLF3,TYROBP,PRKD3,ZNF41,DOCK7,LATS1,SLC15A3,CD3G,WDR82,PIK3R5,EPS15,GANC,SCIMP,WDR7,UNC93B1,CASP4,SGTB,ITK,PRCP,JADE2,KMT2D,SYNRG,BOD1L1,SLC46A3,CYB5R4,RHBDF2,CD209,SSH2,SUFU,MYO5A,AHR,PTPN6,OLFML3,CLEC2D,PTPN22,TRIM44,OTUD4,AHNAK,SYTL3,HERC1,PRAM1,ZFP36L1,ILK,GIMAP8,TRIM22,ARMH3,BCL9L,RASSF3,GSAP,SCAF11,STAT6,GGA2,ADAM9,DOCK8,NADK,MYH9,WAC,SCARF1,DAB2,DRAM2,PARVG,HERC3,TTBK2,ARID4A,ADPRH,C1R,ARRB2,ANXA6,SORL1,SNX6,RASSF5,NLRP1,DOK2,WASF2,STARD8,TGOLN2,GLUL,FAM168A,PLPP3,XAF1,MAN1A1,CREG1,CASP1,ZEB2,ANKFY1,LAIR1,GNPTAB,NCK1,HAVCR2,EPB41L2,MS4A6A,SEPTIN8,LCP1,C19orf38,CEPT1,CARD8,ELL,DMXL2,SIGLEC10,GALC,EVI5,ELF4,IFFO1,SUMF1,PDGFB,CD180,LATS2,CEP120,MYO1F,MYO9B,PPP1R18,NAGK,ZBTB4,ITGB2,WDR11,SERPINB8,ROCK1,MYSM1,ADPGK,FCHO2,PLEK,SMG6,SLC43A2,CD163,OLFML1,ELF1,UVRAG,MALT1,TNS1,ITGB7,SIGLEC1,FMNL1,LILRA5,PICALM,SIRPA,MSR1,STING1,CYP1B1,RUNX1,CD4,NFKB1,MANBA,MEF2C,PPP1R12A,TRPV2,TK2,BNIP2,PCED1B,CTSC,IRF1,TNFRSF1B,CXCL12,SON,SH3BGRL,SNX20,KIAA2026,MSL3,CSF1R,LPAR6,EHBP1L1,CPPED1,RGL1,SH2B3,MARCHF8,DENND4A,DDX60,SSH1,STAT3,STAT4,FYCO1,SP100,EEA1,ZFP91,PTAFR,MGAT1,SIPA1,NIN,PLBD1,BCL2A1,CHST15,VSIG4,PCSK7,MARCHF1,OSCAR,ARAP1,SERPINA1,SYNE1,ADAMTS2,ARHGEF3,FCN1,RBM43,BST1,BCL6B,ARL5A,RESF1,SIGLEC8,ITSN2,SIRPG,ARL6IP5,OSBPL11,HEATR5B,ZNF106,PJA2,DPEP2,PIK3IP1,SAP30L,NRP1,SH3PXD2B,ADGRA2,FCGR3A,SLC2A5,SERPINB9,CX3CR1,C1RL,PECAM1,CEACAM21,PROS1,RUBCN,OSTF1,IRF2,GASK1B,STAB1,SLC9A9,PNRC1,CARD6,POLK,CDC40,BTK,GNB4,AMPD3,WBP1L,VAMP3,LGMN,TBC1D2B,TPP1,MFNG,MOB3C,ZCCHC24,ADAM17,ERAP1,PPM1M,GAS7,CLEC7A,SP110,CD302,STAT1,SYNJ1,BMPR2,UHRF1BP1L,SH3KBP1,JCAD,SZT2,FAM13B,MYO18A,ST8SIA4,STX17,CYLD,TNS3,SEC24D,PLCB2,SRGAP2,PARP8,HELZ,RASA3,LRRK1,STK4,CXCR6,LYST,IL2RB,RASSF4,SPOPL,ARHGAP31,C1S,DSE,RAP2B,ADAMDEC1,RUNX3,GAPVD1,GNS,CCL5,SNX13,RECQL,IQSEC1,KMT2A,SH2D3C,PREX1,AP1S2,MFAP3,GPR132,TLN1,IFIH1,CTSS,FBXL14,HMOX1,DYNC1LI2,SEC14L1,SOS1,ERMAP,PAG1,WDR37,FES,LRCH4,GAL3ST4,KLF9,CEBPA,MOB1A,TNFAIP2,GPATCH8,LEPROT,NID2,MSL2,C3,ZMYND15,SLFN5,JAZF1,RHOQ,BLNK,VASH1,CSDE1,MYOF,RFX5,SNAI3,FBN1,WASHC4,APOBR,GBA,PDGFRB,HLA-DRB1,IL17RA,ARHGAP30,LILRB4,EFCAB14,FEZ2,TRANK1,MAP3K2,RPS6KA2,IKZF5,IL6R,CALHM2,CD1D,CD300C,FUCA1,SNX29,LST1,ZFYVE26,SETD7,LIPA,SELL,KMT2E,CSF3R,NUMB,HLA-DOA,ARHGAP9,QKI,ITPRIPL2,TIMP2,ADA2,CTSO,RIPOR2,CYTH1,FAS,S100PBP,CARD11,EMB,USP24,HPSE,APAF1,CXCR4,VNN2,PLXNB2,AKAP10,TLR5,CYTIP,SLC25A30,MMP19,IKZF4,MYO7A,ARHGAP45,MAFB,LTBP2,HVCN1,KLF11,SPPL2A,TIRAP,FLII,CYFIP1,NECAP2,NAGA,TRAM2,APOL3,SOD2,MYD88,MBP,M6PR,IL2RA,ASXL2,MARF1,INO80,NEK1,CYRIB,GNG2,LAT2,TRAK2,KCTD20,IL18BP,GAB3,SLC36A1,LAPTM5,ITGAL,PSTPIP2,ELK4,SGMS1,CRIM1,ANO6,USF3,CERT1,JAK1,FBXO11,LMBRD1,LPIN2,CCDC93,STAC3,ELL2,PATL1,ARSB,RNF130,GRB2,MCM3AP,CSGALNACT2,FAM78A,GIMAP6,FLVCR2,ALPK1,TUT7,CMTM6,VPS13C,NLRC3,C1QA,SGPP1,ABI3,CYBRD1,MPEG1,ARNT,ABCA1,B2M,HLA-E,DOCK4,FSTL1,JDP2,TBXAS1,PLXND1,FYB1,SLCO2B1,AP1B1,TRIP12,RBMS1,FPR1,MTF1,COLEC12,RNF169,CEP170,ANTXR2,ETS1,GBP4,LDB1,RCSD1,BICRAL,STK10,HACD4,SLFN11,NRIP1,SLAMF6,ADAP2,ARHGEF6,ARHGAP21,TMEM35B,SPG11,TEP1,NOTCH2,CLIP1,EBI3,SFMBT2,RNF19B,LACC1,TET2,F13A1,TGFB1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

ATF7IP,RAB8A,CNN3,LRP1,TAF1,FRMD4B,PLXNB2,PTPRJ,PLCL2,EDEM1,SCPEP1,ST6GAL1,HLA-DQA1,ZSWIM6,TNFSF12,KIAA0355,ZNF106,SLFN11,TIMP2,STAT3,MS4A6A,GAS7,PIP4K2A,HLA-DMA,TET2,C16orf54,CCDC93,PIK3IP1,CMKLR1,LEPROT,KAT6A,ADAMTS2,KMT2A,IKZF1,PIK3CD,ATG16L2,IRF2,EVI5,LRRC8C,PIK3AP1,STAT6,SOS1,LUZP1,LTBP2,SP1,LRRC25,TBC1D9,HBP1,ZCCHC24,CSF1R,CEACAM21,ARHGEF10L,PRKD3,FAM168A,TMEM37,SAMD9,ATM,ARL6IP5,MARCKS,BCL9L,CD48,CYTIP,CTSC,PLBD1,ITGAL,KIAA1462,TRANK1,CTDSP2,PLCB2,SEMA4D,IL18,BTN2A2,COL4A3BP,FES,CTBS,MINK1,PDGFB,GM2A,MTF1,RP2,TNFSF10,XAF1,ENTPD1,DOCK4,VSIG4,ITGAM,DOCK10,RAPGEF2,P2RX7,PIAS1,MBNL1,TRIM44,ARHGAP9,ILK,C1QC,LRCH4,AGO4,SYTL3,TMEM127,PLXNC1,MTM1,MSR1,ELMO1,COTL1,DSE,AXL,WDFY2,PAPLN,KCNJ5,ELF4,MITF,OSTF1,AKAP11,AMPD3,SECISBP2L,RSBN1,DOCK11,VCAN,NPAT,SLCO2B1,CXCL16,CEPT1,ANXA6,AP1B1,TYROBP,RUNX1,TRAM2,PEA15,PRKCB,CASP10,ABHD15,RFX7,MAN1A2,FGR,ARRB2,SPRED1,RNF213,PCSK7,SMG1,MAP3K2,SNRK,FCHO2,PNRC1,P2RY10,TNS1,TFEC,SLC7A7,ME2,MSN,LACTB,SRGN,PDCD1LG2,CSF2RA,HAVCR2,MYOF,HCK,ARHGAP25,GLIPR1,DYNC1LI2,RASAL3,TRIM14,FAM160B1,RELL1,HEG1,TNFAIP2,HERPUD1,CDC42SE1,RCSD1,AHR,ZBTB4,LPXN,USP24,MERTK,TRAPPC10,GIMAP6,SCARF1,GAPVD1,SH2B3,NCOA1,ACAP2,ABI3,PARP9,PIK3R5,GNL3L,KIAA0430,S100PBP,STX11,RBMS2,NLRC5,APOBEC3C,TMC8,DPYD,DRAM2,PLXDC2,CCDC69,ASCC3,INPP5B,GBGT1,CD3G,ST8SIA4,RASSF2,RUNX3,PICALM,ADRBK2,SOD2,RIN2,SH3PXD2A,FBXO11,SPN,AIDA,H6PD,PREX1,FUCA1,APOBEC3D,SPG11,ARID1A,APOBR,ZMYND15,CELF2,NADK,ZFP91,TRAF3IP3,FOXN2,PTGER4,EBI3,ARHGAP21,RNF169,TCP11L1,AIF1,KIAA2026,JADE2,SAMD4A,KDM2A,SRGAP2,DNASE1L1,SIRPA,ATP6V1B2,GPR132,LDB1,CYLD,OSBPL11,STARD8,UTRN,C10orf76,TIRAP,LCP2,FNBP1,FAM65B,NRIP1,ARHGEF11,CREBRF

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-750H9.5

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

DPY30,PUSL1,FIBP,PRDX2,RPL37A,TM7SF2,PAM16,MRM3,RNF181,SF3A2,LAMTOR2,TOMM40,NDUFA13,MLST8,CD320,NDUFA8,CENPX,PCYT2,C1orf35,CDC34,ZNHIT1,SMIM26,PET100,THOC6,XAB2,TMEM9,CCT7,CIAO3,ANAPC11,NAA38,PTOV1,COX6A1,DDX49,CTU2,NDUFS5,SIRT6,NME1,PTTG1,SLC25A39,RUVBL2,CCDC12,PAFAH1B3,SLC25A10,EBP,POLR2H,SERF2,THAP4,TIMM17B,PA2G4,MRPL27,COX4I1,UBL5,MVD,SDHAF2,ITPA,USE1,POLR2J,SNRPD2,MRPS34,ATP5MC2,MYG1,CLTB,SLIRP,SCAND1,ZNRD2,UBE2C,COX6B1,NDUFA7,MZT2A,UQCRC1,LCMT1,PSMC3,TUFM,TMEM208,GPS1,CNPY2,GCAT,MRPL55,ROMO1,CHCHD5,DGUOK,THOP1,NDUFB10,POLD2,UQCR10,PMF1,NELFE,ATP5PD,ECSIT,PPP4C,IFT43,C12orf73,MRPL41,CCDC124,BOLA3,RBM10,ATP5MK,DPM3,CCT3,WDR83,DYNLL1,MYL6B,NOP56,RBM42,NDUFV1,WDR18,BUD23,MRPL28,COA8,TIMM13,DYNC2I2,COX17,ERAL1,EBPL,ELOB,WDR74,LSM5,HSPBP1,TEX264,NMRAL1,MRPL24,ZNHIT2,PRDX5,PSMD4,HRAS,PPP1R14B,ACD,CINP,PARD6A,HSPE1,DPM2,CUTA,PPP2R1A,MZT2B,TSTD1,SURF2,ECI1,SPATA2L,ATP5MJ,DDX56,NDUFAF8,POP7,RPP21,PUF60,NDUFS3,PFDN2,NDUFV2,NAXE,IPO4,CIAO2B,BANF1,NHP2,GFER,EMC9,TBL3,NTHL1,ATP5MC1,POLR2I,TUBB4B,HINT2,DHPS,NAT14,PSMG3,SWI5,NDUFS8,NDUFS7,TMEM258,MIF,UQCC2,SNRPA,ILF2,MCAT,COX8A,ATP5F1D,OTUB1,C19orf53,COPS6,NDUFAB1,ATP5IF1,HDGFL2,COX7A2,SF3B4,LSM7,POLDIP2,RNPS1,TRAPPC2L,TXNL4A,MRPS15,TEDC2,ATP5MF,SLC39A3,PFDN6,ZMYND19,METTL26,MTLN,NDUFB8,NR2F6,NDUFA1,NDUFAF3,NUBP2,KIF22,SEM1,PRMT1,SNU13,SHARPIN,C19orf73

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000255197	ENST00000532340	exon_skip_445390	chr5:150403120-150403312	-25.98	-0.1451	CD74	ENST00000009530	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000255197	ENST00000532340	exon_skip_482403	chr8:27445793-27445919	-13.47	-0.1403	PTK2B	ENST00000346049,ENST00000397501	In-frame
ENSG00000255197	ENST00000532340	exon_skip_378912	chr3:152446703-152446757	-8.37	-0.2325	MBNL1	ENST00000282486,ENST00000463374	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-750H9.5

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000196735	HLA-DQA1	6	BRCA,GBM,KIRC,KIRP,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000110077	MS4A6A	8	BRCA,DLBC,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000174600	CMKLR1	7	BRCA,GBM,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000185811	IKZF1	12	BRCA,DLBC,GBM,KIRC,KIRP,LGG,LUAD,LUSC,MESO,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000171608	PIK3CD	6	BRCA,DLBC,KIRC,KIRP,OV,PAAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000168310	IRF2	7	BRCA,DLBC,KIRC,KIRP,LUAD,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000155629	PIK3AP1	7	BRCA,DLBC,GBM,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000116016	EPAS1	ENSG00000119681	LTBP2	5	DLBC,OV,PAAD,SKCM,STAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000175489	LRRC25	8	BRCA,DLBC,GBM,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000182578	CSF1R	9	BRCA,DLBC,GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000117091	CD48	6	BRCA,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000005844	ITGAL	9	BRCA,DLBC,GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000137841	PLCB2	9	BRCA,DLBC,GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000187764	SEMA4D	5	BRCA,DLBC,KIRC,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000138185	ENTPD1	8	BRCA,DLBC,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000169896	ITGAM	5	GBM,KIRP,LGG,OV,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000152601	MBNL1	7	BRCA,DLBC,KIRC,KIRP,LUSC,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000123329	ARHGAP9	7	BRCA,GBM,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000159189	C1QC	8	BRCA,GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000134698	AGO4	5	DLBC,KIRC,LGG,MESO,PAAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000136040	PLXNC1	5	BRCA,DLBC,KIRC,KIRP,OV
ENSG00000255197	ENSG00000116016	EPAS1	ENSG00000111817	DSE	5	DLBC,OV,PAAD,SKCM,STAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000133805	AMPD3	5	BRCA,DLBC,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000147251	DOCK11	6	DLBC,GBM,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000137491	SLCO2B1	9	BRCA,DLBC,GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000116016	EPAS1	ENSG00000137491	SLCO2B1	5	DLBC,OV,PAAD,SKCM,STAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000003400	CASP10	5	BRCA,DLBC,GBM,KIRC,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000000938	FGR	7	BRCA,GBM,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000141480	ARRB2	7	BRCA,GBM,KIRC,KIRP,LGG,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000173821	RNF213	7	DLBC,GBM,KIRC,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000160613	PCSK7	5	BRCA,DLBC,KIRC,OV,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000198223	CSF2RA	6	BRCA,KIRC,KIRP,LGG,OV,PAAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000135077	HAVCR2	5	BRCA,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000101336	HCK	9	BRCA,DLBC,GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000163219	ARHGAP25	7	BRCA,GBM,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000105122	RASAL3	7	GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000106785	TRIM14	5	DLBC,GBM,KIRC,KIRP,SKCM
ENSG00000255197	ENSG00000116016	EPAS1	ENSG00000173706	HEG1	5	DLBC,OV,PAAD,SKCM,STAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000198771	RCSD1	7	GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000133561	GIMAP6	7	BRCA,DLBC,GBM,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000116016	EPAS1	ENSG00000133561	GIMAP6	5	DLBC,OV,PAAD,SKCM,STAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000111252	SH2B3	7	BRCA,DLBC,GBM,KIRC,KIRP,OV,PAAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000108798	ABI3	8	BRCA,GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000141506	PIK3R5	8	BRCA,DLBC,GBM,KIRC,KIRP,LGG,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000135604	STX11	7	DLBC,GBM,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000140853	NLRC5	6	BRCA,DLBC,KIRC,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000167895	TMC8	8	BRCA,GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000188641	DPYD	6	BRCA,DLBC,KIRC,KIRP,OV,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000101265	RASSF2	7	BRCA,DLBC,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000020633	RUNX3	6	DLBC,GBM,KIRC,KIRP,LUAD,PAAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000184730	APOBR	6	GBM,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000048740	CELF2	9	BRCA,DLBC,KIRC,KIRP,LUAD,LUSC,MESO,OV,PAAD
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000204472	AIF1	6	BRCA,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000173120	KDM2A	5	DLBC,KIRC,KIRP,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000083799	CYLD	7	BRCA,DLBC,KIRC,KIRP,OV,PAAD,SKCM
ENSG00000255197	ENSG00000106948	AKNA	ENSG00000043462	LCP2	9	BRCA,DLBC,GBM,KIRC,KIRP,LGG,OV,PAAD,SKCM

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000255197.4	ENST00000527426.1	98	457	161
ENSG00000255197.4	ENST00000532943.4	161	266	751
ENSG00000255197.4	ENST00000532340.1	156	382	849

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential