 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ABL2,ERGIC2,ATP2A2,KIF2A,LARP4,HSPA8,CSNK1A1,LIMS1,BACH1,GNPTAB,LSM12,ACTR3,SEPTIN11,SSH1,PTPN11,CLIP1,OSBPL8,CORO1C,ITGB1,NOTCH2,NEDD1,SEC23A,TWF1,ASAP1,ACTR2,SPOPL,TRIP12 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000255153 | ENST00000530897 | exon_skip_319223 | chr19:43526200-43526349 | -24.78 | -0.1967 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000255153 | ENST00000530897 | exon_skip_41841 | chr10:68756272-68756483 | -24.30 | -0.1203 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000255153 | ENST00000530897 | exon_skip_111863 | chr14:23565815-23565892 | -16.03 | -1.2331 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000255153 | ENST00000530897 | exon_skip_324294 | chr2:27774423-27774530 | -14.03 | -0.1871 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000255153 | ENST00000530897 | exon_skip_501752 | chr9:136992924-136992974 | -12.66 | -0.3246 | PAXX | ENST00000371620 | Frame-shift | | ENSG00000255153 | ENST00000530897 | exon_skip_287763 | chr17:28884224-28884315 | -26.27 | -0.3700 | FLOT2 | ENST00000394908 | Frame-shift | | ENSG00000255153 | ENST00000530897 | exon_skip_374375 | chr3:49675182-49675309 | -18.77 | -0.1632 | APEH | ENST00000296456 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000255153 | hsa-mir-22 | ENST00000530897 | chr11:1310080-1310168 | 203.00 | -86.89 | 89 | NA | | ENSG00000255153 | hsa-mir-22 | ENST00000530897 | chr11:1309964-1310043 | 187.00 | -78.64 | 82 | NA | | ENSG00000255153 | hsa-mir-22 | ENST00000530897 | chr11:1309874-1309968 | 183.00 | -96.67 | 93 | NA | | ENSG00000255153 | hsa-mir-22 | ENST00000530897 | chr11:1310494-1310585 | 168.00 | -74.94 | 86 | NA | | ENSG00000255153 | hsa-mir-22 | ENST00000530897 | chr11:1309781-1309868 | 167.00 | -93.37 | 84 | NA | | ENSG00000255153 | hsa-mir-22 | ENST00000530897 | chr11:1310231-1310305 | 148.00 | -81.84 | 82 | NA | | ENSG00000255153 | hsa-mir-22 | ENST00000530897 | chr11:1310365-1310459 | 148.00 | -76.72 | 89 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000255153 | ENST00000530897 | CORO1C | ENSG00000110880 | ENST00000546705 | -0.1448 | 700 | KIRC | - | | ENSG00000255153 | ENST00000530897 | CORO1C | ENSG00000110880 | ENST00000421578 | -0.4512 | 162 | KIRC | - | | ENSG00000255153 | ENST00000530897 | ASAP1 | ENSG00000153317 | ENST00000524299 | -0.1138 | 1 | KIRC | - |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000255153 | TOLLIP-DT,hsa-mir-22,FUZ | KICH,CESC,CHOL,PAAD,KIRP | | ENSG00000255153 | TOLLIP-DT,hsa-mir-22,HEXIM2 | KICH,CESC,CHOL,PAAD,KIRP | | ENSG00000255153 | TOLLIP-DT,hsa-mir-22,HEXD | KICH,CESC,CHOL,PAAD,KIRP | | ENSG00000255153 | TOLLIP-DT,hsa-mir-22,NEK8 | KICH,CESC,CHOL,PAAD,KIRP | | ENSG00000255153 | TOLLIP-DT,hsa-mir-22,UBXN11 | KICH,CESC,CHOL,PAAD,KIRP |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000255153.1 | ENST00000530897.1 | 61 | 228 | 413 |
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