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lncRNA: ENSG00000255031

Summary for RP11-802E16.3

Gene summary

Gene information	Ensembl ID	ENSG00000255031
	Gene symbol	RP11-802E16.3
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-802E16.3

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000255031	8.355526e+01	1.502899e+00	4.205761e-01	3.573430e+00	3.523360e-04	1.363327e-03	UP	CHOL
ENSG00000255031	9.012171e+01	1.140706e+00	1.701225e-01	6.705206e+00	2.010000e-11	3.220000e-10	UP	STAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000255031	5.845029e-01	2.487761e-05	CHOL	1.182038e-04

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lncRNA-Protein interaction for RP11-802E16.3

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000118058	KMT2A	90.7	98.086	Q03164	TF,Epi	NA
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000108799	EZH1	65.22	96.0139	Q92800	Epi	NA
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000169592	INO80E	5.78	92.446	Q8NBZ0	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000118058	KMT2A	90.7	98.1228	Q03164	TF,Epi	NA
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000167967	E4F1	89.01	94.7035	Q66K89	TF	NA
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000099326	MZF1	73.13	90.1215	P28698	TF	NA
ENSG00000255031	ENST00000526897	RP11-802E16.3	ENSG00000141258	SGSM2	70.72	94.0227	O43147	TF	NA
ENSG00000255031	ENST00000526897	RP11-802E16.3	ENSG00000173120	KDM2A	70.36	93.1643	Q9Y2K7	TF,Epi	NA
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000065029	ZNF76	13.12	94.643	P36508	TF	NA
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000167766	ZNF83	12.45	93.9432	P51522	TF	NA
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000105717	PBX4	10.75	93.45	Q9BYU1	TF	NA
ENSG00000255031	ENST00000526897	RP11-802E16.3	ENSG00000102878	HSF4	6.61	90.7786	Q9ULV5	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000133226	SRRM1	36.35	95.0195	Q8IYB3	RBP	NA
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000167978	SRRM2	24.64	97.3001	Q9UQ35	RBP	NA
ENSG00000255031	ENST00000534517	RP11-802E16.3	ENSG00000100650	SRSF5	20.12	91.1062	Q13243	RBP	NA

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lncRNA-DNA interaction for RP11-802E16.3

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

LRCH4,AGAP6,GGA3,ARHGEF1,CLCN7,ATAT1,VAV2,VAMP1,TRIM66,RBM39,TRMU,MFSD8,SLC26A6,LENG8,SH2B1,MZF1,ADPGK,MYSM1,INPPL1,RFX5,AKAP8,ZXDC,MAPK8IP3,INTS3,SUGP2,MAFG,N4BP2L2,PPWD1,DMTF1,L3HYPDH,MLLT6,TAF1D,CSAD,KIAA0895L,NHLRC3,GPCPD1,SMCR8,TBRG1,DCAF8,DDX55,ULK3,PHYKPL,VPS39,SF3B1,CCNL2,CAPN10,VMP1,AP1G2,CENATAC,NPEPL1,FAM111A,CLK3,RNPC3,OGA,ANKRD10,SAFB2,MSANTD2,TUBGCP6,CCDC14,PITPNM1,CHKA,SSH3,RIPK3,MRI1,MSL3,PHF12,SUPT7L,ARHGAP27,RPAP1,C2CD3,EHBP1L1,SH2B3,CENPT,TTC14,TYK2,KNTC1,NBEAL2,ALDH3B1,CCNT2,OSBPL7,TAZ,EDC4,SIGIRR,FAM76B,KAT2A,HPS1,LTO1,RBM4B,MLKL,ECHDC2,OGT,RCCD1,PLA2G6,TAF1C,CLK2,MYEF2,MYO19,POLG2,TRAPPC14,DHX34,CHKB,METTL17,MGRN1,CD47,CAPN15,SLC12A9,CLK1,PRPF39,EZH1,ERMARD,MRNIP,ELMOD3,NDOR1,OFD1,DDX17,CTTN,SRRM2,NRBP2,BTN2A1,SLC25A29,MED15,FCHSD1,MTRF1,RAD52,CC2D1B,IKBKB,NBPF11,ACIN1,HDAC10,ANO8,HSF4,INO80E,ENOSF1,ARGLU1,YJEFN3,PGGHG,ANKRD49,PAXBP1,CCNL1,WSB1,USP28,UNC93B1,IL18BP,SGSM2,FNBP4,ANO9,ORMDL1,CELF1,PHF11,RSRP1,TIGD1,RBM45,GPS2,AGER,TRIM52,LBHD1,RP5-1086D14.6,TTC13,MBD6,CDK11A,ZGPAT,STK36,LTB4R,PBX4,PASK,KIFC2,ZNF83,GOLGA8B,HEMK1,ALPK1,NXF1,RASSF3,CCDC88C,GSAP,NR2C2,PAN2,GOLGA8A,NADK,FAM229A,SLFN13,TCIRG1,NEIL1,RBM6,SZT2,GIGYF1,ZNF862,FAM193B,GRIPAP1,ABCA7,CCDC82,UBA7,RBM5,NKTR,ZFC3H1,LUC7L,KLHL17,PNN,BTN2A2,DNASE1,C19orf71,TTLL3,FAM168A,MROH1,CASP8,PARP6,TRA2A,WDR27,UBXN11,EME2,KMT2A,VPS13A,ZDHHC6,HINFP,KHDC4,LRP5L,APBB3,ERCC5,EP400P1,DENND4B,GCA,PNISR,MAN2C1,CORO1B,DXO,LZTR1,ANKRD13D,WBP1,CCDC57,TRAPPC2,TEPSIN,RBM33,NADSYN1,CFAP44

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-802E16.3

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000255031	ENST00000534517	exon_skip_48296	chr10:26755654-26755741	-11.97	-0.1535	ABI1	ENST00000376142	In-frame
ENSG00000255031	ENST00000534517	exon_skip_370518	chr22:50247691-50247776	-11.08	-0.1368	HDAC10	ENST00000216271	Frame-shift
ENSG00000255031	ENST00000534517	exon_skip_382458	chr3:38131595-38131638	-8.05	-0.5750	ACAA1	ENST00000333167	Frame-shift
ENSG00000255031	ENST00000534517	exon_skip_470226	chr7:103307595-103307708	-10.91	-0.1381	PMPCB	ENST00000249269	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-802E16.3

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000255031	ENSG00000006534	ALDH3B1	ACC,CESC,CHOL,ESCA,LAML	CHOL
ENSG00000255031	ENSG00000085733	CTTN	ACC,CESC,CHOL,OV,PAAD	CHOL
ENSG00000255031	ENSG00000099917	MED15	ACC,CHOL,LAML,PAAD,THYM	CHOL
ENSG00000255031	ENSG00000132680	KHDC4	ACC,BLCA,CESC,CHOL,DLBC,ESCA,PAAD,SARC,STAD,THYM,UCEC	CHOL
ENSG00000255031	ENSG00000160796	NBEAL2	ACC,CESC,CHOL,DLBC,LAML,PAAD,THYM,UCEC	CHOL
ENSG00000255031	ENSG00000176994	SMCR8	ACC,CHOL,DLBC,LAML,THYM	CHOL
ENSG00000255031	ENSG00000184445	KNTC1	ACC,CHOL,DLBC,PAAD,SARC,STAD,THYM	CHOL,STAD
ENSG00000255031	ENSG00000197119	SLC25A29	ACC,CHOL,DLBC,PAAD,SARC	CHOL
ENSG00000255031	ENSG00000214021	TTLL3	ACC,BLCA,CHOL,DLBC,ESCA,PAAD,SARC,STAD,THYM,UCEC	CHOL
ENSG00000255031	ENSG00000046651	OFD1	BLCA,CHOL,DLBC,ESCA,PAAD,STAD,THYM,UCEC	CHOL
ENSG00000255031	ENSG00000115687	PASK	BLCA,CESC,CHOL,PAAD,STAD	CHOL
ENSG00000255031	ENSG00000159314	ARHGAP27	BLCA,CHOL,DLBC,LAML,PAAD,THYM	CHOL
ENSG00000255031	ENSG00000163482	STK36	BLCA,CHOL,DLBC,ESCA,PAAD,STAD,THYM,UCEC	CHOL
ENSG00000255031	ENSG00000167615	LENG8	BLCA,CESC,CHOL,DLBC,ESCA,LAML,PAAD,SARC,STAD,THYM,UCEC	CHOL
ENSG00000255031	ENSG00000172932	ANKRD13D	BLCA,CHOL,DLBC,LAML,OV,PAAD,UCEC	CHOL
ENSG00000255031	ENSG00000175265	GOLGA8A	BLCA,CESC,CHOL,DLBC,ESCA,OV,PAAD,STAD,THYM,UCEC	STAD
ENSG00000255031	ENSG00000175455	CCDC14	BLCA,CESC,CHOL,DLBC,ESCA,PAAD,STAD,THYM,UCEC	STAD
ENSG00000255031	ENSG00000185101	ANO9	BLCA,CHOL,ESCA,PAAD,UCEC	CHOL
ENSG00000255031	ENSG00000197774	EME2	BLCA,CESC,CHOL,DLBC,LAML,PAAD,STAD,THYM,UCEC	CHOL
ENSG00000255031	ENSG00000006025	OSBPL7	CESC,CHOL,DLBC,ESCA,LAML,PAAD,UCEC	CHOL
ENSG00000255031	ENSG00000138834	MAPK8IP3	CESC,CHOL,DLBC,ESCA,PAAD,STAD,THYM,UCEC	CHOL
ENSG00000255031	ENSG00000172830	SSH3	CESC,CHOL,DLBC,LAML,PAAD,SARC,THYM	CHOL
ENSG00000255031	ENSG00000179832	MROH1	CESC,CHOL,LAML,PAAD,STAD	CHOL
ENSG00000255031	ENSG00000187951	RP5-1086D14.6	CESC,DLBC,ESCA,SARC,STAD	STAD
ENSG00000255031	ENSG00000076928	ARHGEF1	CHOL,DLBC,LAML,PAAD,UCEC	CHOL
ENSG00000255031	ENSG00000110697	PITPNM1	CHOL,DLBC,ESCA,LAML,PAAD	CHOL
ENSG00000255031	ENSG00000115271	GCA	CHOL,ESCA,PAAD,STAD,THYM	CHOL
ENSG00000255031	ENSG00000129465	RIPK3	CHOL,DLBC,ESCA,LAML,PAAD,THYM	CHOL
ENSG00000255031	ENSG00000137343	ATAT1	CHOL,DLBC,ESCA,PAAD,STAD	CHOL
ENSG00000255031	ENSG00000142102	PGGHG	CHOL,ESCA,OV,PAAD,STAD,UCEC	STAD
ENSG00000255031	ENSG00000142330	CAPN10	CHOL,DLBC,ESCA,LAML,PAAD,STAD	CHOL
ENSG00000255031	ENSG00000143643	TTC13	CHOL,DLBC,ESCA,STAD,THYM	CHOL
ENSG00000255031	ENSG00000166012	TAF1D	CHOL,ESCA,PAAD,STAD,THYM	CHOL
ENSG00000255031	ENSG00000168014	C2CD3	CHOL,DLBC,ESCA,SARC,THYM	CHOL
ENSG00000255031	ENSG00000168404	MLKL	CHOL,DLBC,LAML,PAAD,THYM	CHOL
ENSG00000255031	ENSG00000275023	MLLT6	CHOL,DLBC,PAAD,SARC,THYM	CHOL
ENSG00000255031	ENSG00000278259	MYO19	CHOL,DLBC,PAAD,SARC,THYM	CHOL

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000255031.4	ENST00000529934.4	69	446	655
ENSG00000255031.4	ENST00000526897.1	58	202	26
ENSG00000255031.4	ENST00000534517.1	141	575	150

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential