 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,SPAG9,PMM2,CPLANE1,TTF2,MYCBP2,OXNAD1,CSNK1G3,MFSD8,EXPH5,ANAPC1,CCDC88A,N4BP2L2,DCLRE1C,SLF2,FBXL4,DMTF1,ZNF24,UBE4A,VMP1,ZFP14,CENATAC,ST7L,MSANTD2,CCDC14,RSF1,AFF4,MYO9A,CLK4,SETD2,TTC14,KNTC1,KDM5A,EXOC8,PPIP5K2,CAPN7,STRN3,GIT2,SIAH1,SMAD2,OGT,ARIH1,ARID4B,NFIA,PTAR1,TUT4,RBM15,UBE3A,BBIP1,THOC2,H4C5,ATXN7,OTULIN,GABPB1,PEAK1,INTS6,RFX7,HCFC2,KDM7A,XPNPEP3,MBD5,TTC21B,CAMKMT,SNX27,NPAT,NAPB,NAA25,SETD5,MIS18BP1,ZFP62,GON4L,SOCS4,MDN1,SLC35A3,C9orf72,CHIC1,KLHL11,CHD9,BRAF,BACH1,AGO3,ORC2,SLC35F5,SBNO1,PHC3,LRRC37B,RASGEF1B,SKIL,INTS2,ANKRD28,NR2C2,SLC25A16,SMARCAD1,PDK1,XPO1,CDK17,NRDE2,STYX,ATG2B,ZFC3H1,MBTD1,N4BP2L1,SEPSECS,AP4E1,CCNT1,CEP192,TTC3,GALK2,EIF4A1,PIK3C2A,VPS13A,CRYBG3,EIF2AK2,ZNF69,PGGT1B,STXBP5,ATF7IP,SLF1,MARCHF6,SWT1,LTN1,HERC4,TMEM168,ATM,THADA,TTC17,CDK13,SMURF2,LCORL,CSNK1G1,CEP57,MIB1,HOOK3,FGD4,NEMP2,SPICE1,PPWD1,RELCH,RSBN1,SLC30A7,SASS6,PIBF1,AHI1,ZNF70,CLASP1,INO80D,NHLRC3,ICE2,CRLF3,CNOT6L,PGAP1,KRIT1,GLMN,FAM111A,USP53,COG5,PARP11,GCFC2,THOC1,ANKMY1,UBA6,TRNT1,ACAP2,UBR1,ZZZ3,DENND6A,ZMYM5,TAMM41,TMED8,RELL1,RC3H1,CBLB,XPO4,SETX,MBNL3,ZNF44,TRIM13,SMG1,XIAP,SLC25A46,BCLAF3,APBB2,PUS7L,MCM9,CEP83,LIN54,UBN2,ERCC6L2,DDX6,KIAA0586,LRIG2,ABHD18,SESTD1,NEMF,RTTN,SLC5A3,REV3L,SMCHD1,CREBRF,DYNLT2,PRKD3,LATS1,DGKE,ENOSF1,ANKRD49,PAXBP1,SLC38A9,GANC,COA1,BOD1L1,PLEKHA8,SSH2,MLLT10,H2AC7,MYO5A,CHD2,CLEC2D,FOXP1,PWWP2A,OTUD4,ZNF720,LINS1,HERC1,QKI,ROCK2,ANKRD26,SCAF11,PUS10,ARHGAP32,GK5,RBM6,TOR1AIP2,TRMT13,GDAP2,PDS5B,ARHGAP12,ARID4A,LPP,RNF115,ATP6V0A2,SMAD4,SYNE2,CBX5,CHD1,WDR27,ZEB2,PNISR,GEN1,SFPQ,CEPT1,USP45,CARD8,DMXL2,PIK3CA,ATAD2B,NCOA2,INVS,ESCO1,RALGAPA1,KLF12,ANGEL2,B3GALNT2,ROCK1,MYSM1,N4BP2,MED13L,CEP57L1,ARID2,ASPM,VPS13B,MALT1,TAF1D,KATNBL1,TASP1,SLX4IP,ITSN1,SUGT1,PPP1R12A,KLHDC1,PBRM1,TET3,BNIP2,PRR14L,PPM1A,RNPC3,C14orf28,ANKRD10,BARD1,RPS6KB1,UBXN7,LRCH3,CNOT4,SON,DOP1A,KIAA2026,KMT2C,CCSAP,MRPS30,FBXO22,DENND4A,RLIM,MPHOSPH9,CCNT2,PTCD3,EEA1,ZNF91,CHD6,AGO2,BRWD1,NIN,DDI2,RBM26,NAPEPLD,PURB,ATP13A3,SPATA6,CCNH,RBM25,FBXW7,RO60,TBCK,ZFP30,MLH3,SP4,KANSL1L,UBR5,LNPEP,RESF1,ITSN2,ETNK1,ERMARD,KIAA0753,ZFAND1,EPC1,LCOR,DDHD1,ZNF717,MAP4K5,SLC4A7,UBR3,ATXN3,FBXL20,CENPC,RBM41,NOL9,OTUD6B,CCNL1,TLK1,C2orf49,PLEKHA3,NCOR1,CELF1,TMEM161B,EPG5,KRR1,SDCCAG8,PRDM2,RBL1,SPATA5,PMS1,USP12,DENND1B,DCUN1D1,WDR36,AAK1,TIA1,ZNF83,KANSL1,NSUN6,RFX3,SYNJ1,USP32,FAM13B,USP48,CYLD,STX17,PARP8,HELZ,H2BC9,CWF19L2,STK4,ELF2,LYST,LUC7L,ZNF43,LUC7L2,ERCC8,TMCC1,UBE2V1,ARHGAP5,CDK6,SNX13,MAPKAPK5,KMT2A,SLC10A7,TPP2,PHOSPHO2,PCBD2,NRIP2,FAM135A,APPL1,SOS1,RUFY2,JMY,RBM33,PAG1,AVL9,ZDHHC21,CFAP44,GABPB2,RBM39,ODF2L,H3C4,TNPO1,MSL2,ERICH1,TBL1XR1,PDS5A,PIGL,RABGAP1L,ATRX,GPATCH2,RBM28,MAML2,PHYKPL,ABCA5,NHLRC2,RUFY3,PTEN,ZFYVE26,RASAL2,PAN3,CEP350,RNF168,KMT2E,CLASP2,DCAF16,ACVR2B,ITPR2,MORC3,RICTOR,CHORDC1,S100PBP,SCLT1,METTL25,DPP8,USP24,APAF1,SOS2,TOGARAM1,IMMP2L,FAM76B,BRWD3,AKAP10,RNF217,EXOG,GAN,NF1,SLC38A6,RNASEH2B,THAP9,TRIM33,RAB22A,WDR20,THAP6,DDX17,ABL2,SLC7A6,RSBN1L,FMR1,DYRK1A,ASXL2,STRN,CEP290,TRPM7,NEK1,GNG2,TRAPPC8,WSB1,GPALPP1,MAP4K3,ERV3-1,MKLN1,WDR41,PHIP,FAM228B,DLG1,ELK4,KLC1,TRIM52,CLMN,NCBP3,USF3,ZC3HAV1L,CCDC93,TTC13,LMBR1,TM2D1,GOLGA8B,ALPK1,TUT7,VPS13C,ZFX,CBR4,APPBP2,LMBRD2,PPHLN1,FKTN,CNOT2,ALG9,ABCA1,PIKFYVE,DUSP28,PUM2,RBM5,USP3,NKTR,RBMS1,ZNF17,TTLL3,CRBN,TUBE1,CEP170,ZNF84,BAZ2B,CCP110,PARP6,WDR33,WDR26,TRA2B,FRYL,PCMTD1,PIAS2,JMJD1C,USP31,SPG11,NGLY1,USPL1,LIN7C,TET2,TRAPPC2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ATP6V0C | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000254911 | ENSG00000062716 | VMP1 | BLCA,BRCA,COAD,KIRC,LUAD,UCEC | KIRC,LUAD | | | ENSG00000254911 | ENSG00000066279 | ASPM | BLCA,COAD,GBM,LUAD,UCEC | COAD,LUAD,UCEC | | | ENSG00000254911 | ENSG00000069493 | CLEC2D | BLCA,BRCA,KIRC,KIRP,LUAD,THYM,UCEC | KIRC | | | ENSG00000254911 | ENSG00000076641 | PAG1 | BLCA,BRCA,COAD,ESCA,KIRC,UCEC | KIRC | | | ENSG00000254911 | ENSG00000109046 | WSB1 | BLCA,BRCA,COAD,KIRC,LGG,UCEC | KIRC | | | ENSG00000254911 | ENSG00000111300 | NAA25 | BLCA,BRCA,COAD,KIRC,LAML,LUAD,PRAD,UCEC | COAD | | | ENSG00000254911 | ENSG00000113240 | CLK4 | BLCA,COAD,KIRC,LGG,UCEC | KIRC | | | ENSG00000254911 | ENSG00000116830 | TTF2 | BLCA,COAD,KIRC,LUAD,UCEC | UCEC | | | ENSG00000254911 | ENSG00000132953 | XPO4 | BLCA,BRCA,COAD,KIRC,LUAD,PRAD,UCEC | COAD | | | ENSG00000254911 | ENSG00000146858 | ZC3HAV1L | BLCA,BRCA,COAD,READ,UCEC | COAD,READ | | | ENSG00000254911 | ENSG00000152256 | PDK1 | BLCA,BRCA,COAD,KIRC,LUAD,UCEC | KIRC,LUAD,UCEC | | | ENSG00000254911 | ENSG00000152520 | PAN3 | BLCA,COAD,KIRC,LUAD,PRAD,UCEC | COAD | | | ENSG00000254911 | ENSG00000154429 | CCSAP | BLCA,COAD,KIRC,LAML,LUAD,PRAD,UCEC | COAD | | | ENSG00000254911 | ENSG00000155100 | OTUD6B | BLCA,COAD,KIRC,LAML,UCEC | COAD | | | ENSG00000254911 | ENSG00000165029 | ABCA1 | BLCA,BRCA,COAD,KIRC,UCEC | KIRC | | | ENSG00000254911 | ENSG00000166012 | TAF1D | BLCA,BRCA,COAD,DLBC,ESCA,KIRP,LGG,LUAD,PCPG,UCEC | COAD,LUAD | | | ENSG00000254911 | ENSG00000175455 | CCDC14 | BLCA,BRCA,COAD,KIRC,LUAD,PRAD,THYM,UCEC | KIRC | | | ENSG00000254911 | ENSG00000178295 | GEN1 | BLCA,BRCA,COAD,LUAD,THYM,UCEC | LUAD,UCEC | | | ENSG00000254911 | ENSG00000184445 | KNTC1 | BLCA,COAD,KIRC,LUAD,UCEC | COAD,KIRC,LUAD,UCEC | | | ENSG00000254911 | ENSG00000184465 | WDR27 | BLCA,BRCA,COAD,KIRC,KIRP,LGG,UCEC | COAD,KIRC | | | ENSG00000254911 | ENSG00000184786 | DYNLT2 | BLCA,COAD,LGG,THYM,UCEC | COAD | | | ENSG00000254911 | ENSG00000196236 | XPNPEP3 | BLCA,BRCA,COAD,KIRC,LUAD,PRAD,READ,UCEC | COAD,READ | | | ENSG00000254911 | ENSG00000197409 | H3C4 | BLCA,BRCA,COAD,GBM,KIRC,OV,THYM,UCEC | KIRC,UCEC | | | ENSG00000254911 | ENSG00000198743 | SLC5A3 | BLCA,BRCA,COAD,LUAD,PRAD,UCEC | LUAD | | | ENSG00000254911 | ENSG00000213462 | ERV3-1 | BLCA,BRCA,COAD,KIRC,UCEC | COAD,UCEC | | | ENSG00000254911 | ENSG00000275713 | H2BC9 | BLCA,BRCA,COAD,GBM,THYM | COAD | | | ENSG00000254911 | ENSG00000110723 | EXPH5 | BRCA,COAD,LUAD,PRAD,UCEC | UCEC | | | ENSG00000254911 | ENSG00000140650 | PMM2 | BRCA,COAD,KIRC,LUAD,PRAD,UCEC | LUAD | | | ENSG00000254911 | ENSG00000185158 | LRRC37B | BRCA,KIRC,KIRP,LGG,LUAD,PRAD | KIRC | | | ENSG00000254911 | ENSG00000186166 | CENATAC | BRCA,COAD,DLBC,ESCA,KIRC,KIRP,LGG,LUAD,PCPG,PRAD,READ,THYM | KIRC,READ | | | ENSG00000254911 | ENSG00000214021 | TTLL3 | BRCA,COAD,ESCA,KIRP,LUAD,PRAD,READ | READ | | | ENSG00000254911 | ENSG00000080839 | RBL1 | COAD,LAML,LUAD,THYM,UCEC | COAD | | | ENSG00000254911 | ENSG00000103064 | SLC7A6 | COAD,KIRC,LUAD,THYM,UCEC | COAD | | | ENSG00000254911 | ENSG00000139597 | N4BP2L1 | COAD,ESCA,KIRC,LUAD,PRAD | KIRC | | | ENSG00000254911 | ENSG00000156876 | SASS6 | COAD,KIRC,LAML,LUAD,UCEC | LUAD | | | ENSG00000254911 | ENSG00000215252 | GOLGA8B | COAD,KIRP,LGG,LUAD,THYM | COAD | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000254911.3 | ENST00000530422.1 | 69 | 144 | 353 |
|
