 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ENTPD5,C1orf210,SMCO4,LRRC66,MUC13,CALML4,ADI1,PRELID2,ACOT11,PLAAT2,NMRAL1,NAPRT,CDHR5,PRR15,COX5A,SCP2,GCHFR,MARVELD3,CMBL,TDP2,ACY3,SLC44A4,CAMK2N1,CORO2A,KRT8,TPMT,SLC25A1,CDHR2,EPCAM,TMEM53,VAMP8,SMIM22,GBP3,GFER,ADAP1,RIPK3,PPP1R16A,TSPAN3,ASL,SCAMP2,COA4,VILL,PTPRH,LGALS4,ANPEP,TMEM150B,HSD17B11,POLD4,CYSTM1,BAIAP2L2,AKR7A3,CISD3,PAFAH2,SLC9A3R1,HMOX2,TXNDC17,CD151,TMEM120A,RBM47,VDR,MRPS11,BCL10,DOK4,TMEM9B,DGAT1,RHOC,TMC4,TTC38,KCNK5,ETFA,LPCAT4,HECTD3,RASSF7,RER1,COX4I1,CHCHD10,GPR35,HDHD3,TMEM82,CYBA,MISP,TCN2,BCL2L15,USH1C,NIT1,MVP,MYO1A,MCRIP2,ABCC3,PPP1R14D,RILP,SLC39A4,PLS1,ORAI3,ATP5MC3,SULT1A1,ACY1,SUCLG1,PRELID1,ACSS2,DECR2,C1QTNF12,SDCBP2,TRIM15,GALE,ECHS1,CLRN3,DHRS11,CLTB,SLC22A18,TMEM125,MAPK3,CDH17,TMEM54,RAB5IF,CES2,PCYT2,ATP5IF1,GPT,ACADS | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | KCNK5,TRIM15,CAMK2N1,SULT1A1,HMOX2,ACOT11,TMEM54,AKR1B10,TINAG,SCAMP2,ETFA,PRR13,MISP,B3GNT3,GCHFR,HSD17B11,AMN,RPP25,NMRAL1,HRASLS2,C11orf86 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CHD6,DSTYK,TTBK2,PHF10,MDN1,HEATR6,WDR19,MAP3K4,RAD54L2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000254827 | ENST00000455942 | exon_skip_59476 | chr11:57815914-57816001 | -15.40 | -0.2299 | CTNND1 | ENST00000399050 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000254827 | ENST00000455942 | exon_skip_90104 | chr12:10709907-10710114 | -25.39 | -0.1351 | YBX3 | ENST00000228251 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer | | ENSG00000254827 | SLC22A18AS | rs389646:2925761:A:G | 0 | | 2 | KIRC,THCA | | ENSG00000254827 | SLC22A18AS | rs451443:2925915:A:G:- | 0 | | 2 | KIRC,THCA | | ENSG00000254827 | SLC22A18AS | rs392212:2926495:A:G | 0 | | 2 | KIRC,THCA |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000254827 | ENSG00000080031 | PTPRH | CESC,CHOL,COAD,ESCA,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000099834 | CDHR5 | CESC,COAD,ESCA,KIRC,KIRP,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000102882 | MAPK3 | CESC,CHOL,COAD,ESCA,PAAD,READ,STAD | | COAD | | ENSG00000254827 | ENSG00000121900 | TMEM54 | CESC,CHOL,COAD,ESCA,PAAD,READ,STAD | | COAD | | ENSG00000254827 | ENSG00000175482 | POLD4 | CESC,COAD,ESCA,KIRC,LIHC,PAAD,READ | | COAD | | ENSG00000254827 | ENSG00000196502 | SULT1A1 | CESC,COAD,LIHC,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000120756 | PLS1 | CHOL,CHOL,COAD,COAD,ESCA,ESCA,PAAD,PAAD,READ,READ,STAD,STAD | | COAD,COAD,READ,READ | | ENSG00000254827 | ENSG00000074276 | CDHR2 | CHOL,COAD,ESCA,PAAD,READ,STAD | | COAD | | ENSG00000254827 | ENSG00000099812 | MISP | CHOL,COAD,ESCA,KIRC,PAAD,STAD | | COAD | | ENSG00000254827 | ENSG00000106789 | CORO2A | CHOL,COAD,ESCA,PAAD,STAD | | COAD | | ENSG00000254827 | ENSG00000109062 | SLC9A3R1 | CHOL,COAD,KIRC,KIRP,PAAD,STAD | | COAD | | ENSG00000254827 | ENSG00000111802 | TDP2 | CHOL,COAD,KIRP,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000117226 | GBP3 | CHOL,COAD,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000125775 | SDCBP2 | CHOL,COAD,ESCA,PAAD,READ,STAD,UCEC | | COAD,READ | | ENSG00000254827 | ENSG00000140497 | SCAMP2 | CHOL,COAD,ESCA,PAAD,READ,STAD | | COAD | | ENSG00000254827 | ENSG00000140832 | MARVELD3 | CHOL,COAD,ESCA,PAAD,READ,STAD | | COAD | | ENSG00000254827 | ENSG00000158006 | PAFAH2 | CHOL,COAD,ESCA,READ,STAD,UVM | | COAD,READ | | ENSG00000254827 | ENSG00000162545 | CAMK2N1 | CHOL,COAD,ESCA,READ,STAD | | COAD | | ENSG00000254827 | ENSG00000164237 | CMBL | CHOL,COAD,KIRP,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000166825 | ANPEP | CHOL,COAD,KIRC,KIRP,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000175348 | TMEM9B | CHOL,COAD,OV,PAAD,READ,STAD,UVM | | READ | | ENSG00000254827 | ENSG00000185339 | TCN2 | CHOL,COAD,KIRP,READ,UVM | | COAD,READ | | ENSG00000254827 | ENSG00000198189 | HSD17B11 | CHOL,COAD,ESCA,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000204385 | SLC44A4 | CHOL,COAD,ESCA,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000278535 | DHRS11 | CHOL,COAD,ESCA,READ,STAD,UVM | | COAD,READ | | ENSG00000254827 | ENSG00000116171 | SCP2 | COAD,ESCA,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000122971 | ACADS | COAD,ESCA,KIRP,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000131069 | ACSS2 | COAD,ESCA,KIRC,PAAD,READ,STAD | | COAD | | ENSG00000254827 | ENSG00000133328 | PLAAT2 | COAD,KIRC,KIRP,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000136059 | VILL | COAD,ESCA,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000142867 | BCL10 | COAD,ESCA,PAAD,READ,STAD,UVM | | READ | | ENSG00000254827 | ENSG00000162460 | TMEM82 | COAD,KIRC,KIRP,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000166866 | MYO1A | COAD,ESCA,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000167701 | GPT | COAD,KIRC,KIRP,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000167705 | RILP | COAD,LIHC,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000172831 | CES2 | COAD,KIRC,KIRP,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000187097 | ENTPD5 | COAD,KIRP,PAAD,READ,STAD | | COAD,READ | | ENSG00000254827 | ENSG00000188761 | BCL2L15 | COAD,ESCA,PAAD,READ,STAD | | COAD | | ENSG00000254827 | ENSG00000188993 | LRRC66 | COAD,ESCA,PAAD,READ,STAD | | COAD,READ |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000254827.4 | ENST00000625099.2 | 209 | 241 | 870 | | ENSG00000254827.4 | ENST00000526203.1 | 253 | 497 | 1258 | | ENSG00000254827.4 | ENST00000455942.3 | 150 | 126 | 578 |
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