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lncRNA: ENSG00000254815

Summary for LMNTD2-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000254815
	Gene symbol	LMNTD2-AS1
	Gene name	LMNTD2 antisense RNA 1
	HGNC	41204
	Entrez ID	692247
	Gene type	antisense
	Synonyms	RP11-496I9.1\|11p15.5\|LMNTD2-AS1
	UniProtAcc

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Structure and expression level for LMNTD2-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000254815	4.498664e+02	2.244790e+00	3.272142e-01	6.860307e+00	6.870000e-12	1.090000e-10	UP	CHOL
ENSG00000254815	4.926514e+02	3.653281e+00	2.101974e-01	1.738024e+01	1.160000e-67	5.240000e-66	UP	KIRC
ENSG00000254815	1.910684e+02	1.991683e+00	3.696615e-01	5.387855e+00	7.130000e-08	8.280000e-07	UP	BLCA
ENSG00000254815	2.114586e+02	3.539536e+00	8.215510e-01	4.308357e+00	1.640000e-05	2.710590e-04	UP	CESC
ENSG00000254815	5.992010e+02	1.909432e+00	3.182140e-01	6.000464e+00	1.970000e-09	1.310000e-08	UP	KIRP
ENSG00000254815	1.947516e+02	1.410804e+00	1.994587e-01	7.073163e+00	1.510000e-12	1.470000e-11	UP	PRAD
ENSG00000254815	2.694330e+02	1.732366e+00	1.585821e-01	1.092409e+01	8.840000e-28	8.120000e-27	UP	BRCA
ENSG00000254815	2.793383e+02	1.013715e+00	2.152211e-01	4.710109e+00	2.480000e-06	7.610000e-06	UP	LUAD

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000254815	5.433845e-01	1.146685e-04	CHOL	3.325388e-04

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lncRNA-Protein interaction for LMNTD2-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000254815	ENST00000533844	RP11-496I9.1	ENSG00000130254	SAFB2	47.55	91.3222	Q14151	TF,RBP	ENCODE
ENSG00000254815	ENST00000527113	RP11-496I9.1	ENSG00000130254	SAFB2	27.95	92.4863	Q14151	TF,RBP	ENCODE
ENSG00000254815	ENST00000527620	RP11-496I9.1	ENSG00000141258	SGSM2	24.93	94.4877	O43147	TF	NA
ENSG00000254815	ENST00000527620	RP11-496I9.1	ENSG00000126456	IRF3	4.73	91.3037	Q14653	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000254815	ENST00000527113	RP11-496I9.1	ENSG00000130254	SAFB2	27.95	92.0803	Q14151	TF,RBP	ENCODE
ENSG00000254815	ENST00000527620	RP11-496I9.1	ENSG00000185946	RNPC3	25.73	90.4912	Q96LT9	RBP	NA
ENSG00000254815	ENST00000527113	RP11-496I9.1	ENSG00000167978	SRRM2	7.35	95.4287	Q9UQ35	RBP	NA
ENSG00000254815	ENST00000533844	RP11-496I9.1	ENSG00000130254	SAFB2	47.55	91.3223	Q14151	TF,RBP	ENCODE
ENSG00000254815	ENST00000533844	RP11-496I9.1	ENSG00000167978	SRRM2	13.87	95.6323	Q9UQ35	RBP	NA

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lncRNA-DNA interaction for LMNTD2-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

LRCH4,SRRT,AGAP6,LRRC14,GGA3,WRAP73,NISCH,FAAP100,ATAT1,PYROXD2,VAMP1,ARL16,IFT27,SLC26A11,EPOR,STRN4,GLI4,SLC29A2,DNAJC4,RBM39,LENG8,BICRA,TMEM234,SH2B1,IRF3,CIRBP,STK11,PPP1R12C,C1orf159,ATN1,FAM98C,NICN1,MZF1,CHTF18,TMEM44,RTKN,PPOX,IP6K2,SIRT3,RRNAD1,MAPK8IP3,KAT8,SH3D21,INTS3,N4BP2L2,HRAS,DMTF1,UNKL,RP11-523H20.5,C1orf35,CSAD,KIAA0895L,B3GAT3,ATAD3B,SAMD10,DCAF8,C20orf96,LAMA5,MFSD10,ULK3,PHYKPL,TMEM259,POFUT2,GATAD1,CCNL2,ARFGAP1,BICDL2,CAPN10,FBXO46,AP1G2,CENATAC,NPEPL1,CLK3,RNPC3,ANKRD10,SAFB2,KCTD13,MSANTD2,THOC1,RECQL5,ANKMY1,TUBGCP6,PHKG2,INF2,SSH3,GABBR1,LRRC75B,PPP1R16A,RFNG,INTS11,ARHGAP27,MED25,FLOT2,ZBED5,DDTL,RNH1,PRKD2,SGSM3,IFT140,HDAC10,CENPT,PACS2,TTC14,TRIP10,TYK2,COQ4,NBEAL2,TRIM3,GATD1,OSBPL7,MTG1,TAZ,SPG7,SIGIRR,CDK20,KAT2A,GTPBP3,SRSF4,CDC42BPG,ACBD4,NPDC1,PPP1R13L,TSC2,PIDD1,ECHDC2,OGT,RCCD1,PLA2G6,CSNK1E,TAF1C,RNPS1,AP5Z1,CLK2,MROH6,ILKAP,DHX34,ENDOV,ALS2CL,CHKB,METTL17,BAIAP3,RHBDF1,EPS8L2,FBXO44,POLI,CAPN15,BBC3,CNKSR1,TRIM11,SLC12A9,PGAP2,OSGEP,WDR83,EXD3,CLK1,PRPF39,P4HTM,MRNIP,ERMARD,RABL2A,LLGL2,EPS8L1,ELMOD3,TRIM45,NDOR1,MOV10,SGSH,PRR36,PCED1A,OFD1,CTTN,TMEM41B,NRBP2,ACYP1,SRRM2,MAPK15,SLC25A29,MIB2,FCHSD1,TNFRSF10B,IFT172,PHF1,CC2D1B,ARVCF,IKBKB,BRF1,ABHD11,ACIN1,TMC4,DEAF1,HGS,ANO8,HEXIM2,HSF4,PROSER3,INO80E,ENOSF1,ARGLU1,ANKS3,NOXA1,PGGHG,TELO2,C3orf62,FBXL6,RGL3,WSB1,PIGQ,ANKRA2,SGSM2,RASSF7,FNBP4,DENND6B,ANO9,ZFYVE19,INPP5E,POLL,LRRC56,CCHCR1,WASHC1,LPAR2,RSRP1,USP21,MICALL2,TIGD1,NEK8,SH2D3A,IQCC,DDX51,AGER,GPS2,TRIM52,FUZ,NOL12,FAM160A2,CRACR2B,PCP2,CLASRP,SRSF2,MBD6,CDK11A,ZGPAT,STK36,LTB4R,MOB2,KIFC2,TSEN54,TIA1,ZMAT1,HOOK2,ODF3B,ZNF83,GOLGA8B,SPATA20,ATG4B,HEMK1,HCN3,TMUB2,ARFRP1,LMNTD2,CCDC191,ROGDI,NXF1,OGFR,PTOV1,ABCD4,LZTS2,PCGF2,GOLGA8A,USP43,SLFN13,BRAT1,PAM16,C2orf68,FBXL8,SETD4,NEIL1,RBM6,GIGYF1,KRTCAP2,ZNF862,CARD19,FAM193B,GRIPAP1,RNF215,IDUA,AARSD1,ABCA7,PNKP,TMCO6,DUSP28,NOL3,TMEM134,RBM5,AXIN1,NKTR,YPEL3,MYL5,KLHL17,LUC7L,PNN,TTLL3,HEXD,UCKL1,MROH1,SYNGAP1,DPH7,SCNN1D,CACNB3,CCDC24,TRA2A,WDR27,MTMR11,UBXN11,EME2,POLM,DECR2,KHDC4,KIF12,CROCC,PLXNB1,APBB3,FBRS,CCDC14,USF2,SLC22A18,CYHR1,PPP1R26,SIRT6,ENTPD2,CYTH2,MAN2C1,MIER2,ANKRD13D,MRPL38,CCDC57,TEPSIN,RBM33,LRRC45,SIRT7,ENKD1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LMNTD2-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000254815	ENST00000533844	exon_skip_302168	chr19:10680345-10680443	-11.26	-0.1444	ILF3	ENST00000590261	Frame-shift
ENSG00000254815	ENST00000533844	exon_skip_380242	chr3:186784961-186785101	-19.85	-0.1438	EIF4A2	ENST00000323963	Frame-shift
ENSG00000254815	ENST00000533844	exon_skip_382458	chr3:38131595-38131638	-8.44	-0.2558	ACAA1	ENST00000333167	Frame-shift
ENSG00000254815	ENST00000533844	exon_skip_470226	chr7:103307595-103307708	-14.17	-0.1300	PMPCB	ENST00000249269	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for LMNTD2-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000254815	ENSG00000006025	OSBPL7	BLCA,BRCA,CESC,KIRC,KIRP,PAAD	KIRP
ENSG00000254815	ENSG00000007384	RHBDF1	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,THYM	CHOL,KIRP
ENSG00000254815	ENSG00000013441	CLK1	BLCA,BRCA,KIRC,KIRP,PAAD,UCS	KIRC
ENSG00000254815	ENSG00000064687	ABCA7	BLCA,BRCA,CESC,KIRC,KIRP,PAAD	CESC
ENSG00000254815	ENSG00000067836	ROGDI	BLCA,BRCA,CHOL,KIRP,UCS	BRCA
ENSG00000254815	ENSG00000073350	LLGL2	BLCA,CESC,CHOL,KIRP,PAAD,THYM	CESC,CHOL
ENSG00000254815	ENSG00000095066	HOOK2	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD	CHOL
ENSG00000254815	ENSG00000100288	CHKB	BLCA,BRCA,KIRC,KIRP,PAAD,UCS	KIRC
ENSG00000254815	ENSG00000100429	HDAC10	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC	KIRC,KIRP
ENSG00000254815	ENSG00000102125	TAZ	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,UCEC,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000104859	CLASRP	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	KIRC
ENSG00000254815	ENSG00000104973	MED25	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000105443	CYTH2	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,UCEC,UCS	CHOL
ENSG00000254815	ENSG00000106077	ABHD11	BLCA,CESC,CHOL,KIRP,PAAD	CESC,CHOL,KIRP
ENSG00000254815	ENSG00000107816	LZTS2	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,THYM	CHOL
ENSG00000254815	ENSG00000108773	KAT2A	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC	BLCA,KIRC,KIRP
ENSG00000254815	ENSG00000110628	SLC22A18	BLCA,BRCA,CESC,CHOL,PAAD	BRCA,CESC
ENSG00000254815	ENSG00000113108	APBB3	BLCA,BRCA,CESC,KIRC,KIRP,OV,THYM,UCEC,UCS	KIRC
ENSG00000254815	ENSG00000117616	RSRP1	BLCA,BRCA,KIRC,KIRP,OV,PAAD,UCEC,UCS	BLCA,KIRC
ENSG00000254815	ENSG00000127415	IDUA	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,PAAD	CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000130299	GTPBP3	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD	BLCA
ENSG00000254815	ENSG00000130590	SAMD10	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCS	BLCA,BRCA,CESC,CHOL
ENSG00000254815	ENSG00000132522	GPS2	BLCA,BRCA,CESC,KIRC,KIRP,UCEC,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000132680	KHDC4	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,THYM,UCS	BLCA,CHOL
ENSG00000254815	ENSG00000134253	TRIM45	BLCA,BRCA,CHOL,KIRP,PAAD,THYM	CHOL
ENSG00000254815	ENSG00000135722	FBXL8	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	BLCA,KIRC,KIRP
ENSG00000254815	ENSG00000137343	ATAT1	BLCA,CHOL,KIRC,KIRP,PAAD	BLCA,CHOL
ENSG00000254815	ENSG00000138834	MAPK8IP3	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000139631	CSAD	BLCA,BRCA,KIRC,KIRP,OV,PAAD,THYM,UCEC	KIRC
ENSG00000254815	ENSG00000142330	CAPN10	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000142675	CNKSR1	BLCA,BRCA,CHOL,OV,PAAD,THYM,UCEC,UCS	BLCA,CHOL
ENSG00000254815	ENSG00000143630	HCN3	BLCA,KIRC,KIRP,UCEC,UCS	BLCA
ENSG00000254815	ENSG00000143793	C1orf35	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,UCS	BLCA,BRCA
ENSG00000254815	ENSG00000148824	MTG1	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,PAAD	BLCA,CESC
ENSG00000254815	ENSG00000158062	UBXN11	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	BLCA,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000159314	ARHGAP27	BLCA,CHOL,KIRC,KIRP,PAAD,UCS	CHOL,KIRP
ENSG00000254815	ENSG00000160796	NBEAL2	BLCA,BRCA,CHOL,KIRC,OV,PAAD	CHOL
ENSG00000254815	ENSG00000160972	PPP1R16A	BLCA,BRCA,CESC,CHOL,KIRC,OV,PAAD,UCS	BLCA
ENSG00000254815	ENSG00000161010	MRNIP	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,THYM,UCS	KIRC
ENSG00000254815	ENSG00000161328	LRRC56	BLCA,BRCA,CESC,CHOL,KIRP,OV,THYM,UCEC,UCS	BRCA,CESC,CHOL
ENSG00000254815	ENSG00000163482	STK36	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,THYM,UCEC	CHOL
ENSG00000254815	ENSG00000167535	CACNB3	BLCA,CESC,CHOL,KIRC,KIRP,PAAD	BLCA,CHOL,KIRP
ENSG00000254815	ENSG00000167615	LENG8	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCS	CHOL,KIRC
ENSG00000254815	ENSG00000167702	KIFC2	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	BLCA,BRCA,CESC,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000168096	ANKS3	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	CHOL,KIRP
ENSG00000254815	ENSG00000172932	ANKRD13D	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000174669	SLC29A2	BLCA,CESC,CHOL,PAAD,UCS	BLCA,CESC
ENSG00000254815	ENSG00000174788	PCP2	BLCA,BRCA,KIRP,OV,UCEC	BLCA,BRCA
ENSG00000254815	ENSG00000175265	GOLGA8A	BLCA,KIRC,KIRP,OV,PAAD,THYM,UCEC,UCS	BLCA,KIRC,KIRP
ENSG00000254815	ENSG00000175309	PHYKPL	BLCA,BRCA,CESC,KIRC,KIRP,OV,PAAD	KIRC
ENSG00000254815	ENSG00000175455	CCDC14	BLCA,CESC,CHOL,KIRC,KIRP,PAAD	BLCA,CESC,KIRC,KIRP
ENSG00000254815	ENSG00000177595	PIDD1	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000178038	ALS2CL	BLCA,CESC,CHOL,KIRP,OV,PAAD,THYM	CESC
ENSG00000254815	ENSG00000181085	MAPK15	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD	BLCA,BRCA,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000182173	TSEN54	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,UCS	BRCA,CHOL
ENSG00000254815	ENSG00000183248	PRR36	BLCA,BRCA,CHOL,KIRP,OV	BLCA,BRCA,CHOL,KIRP
ENSG00000254815	ENSG00000185101	ANO9	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC	BRCA,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000185187	SIGIRR	BLCA,BRCA,CESC,OV,PAAD,UCEC,UCS	BRCA
ENSG00000254815	ENSG00000185189	NRBP2	BLCA,BRCA,CESC,KIRC,KIRP,OV,PAAD,THYM	KIRC,KIRP
ENSG00000254815	ENSG00000185522	LMNTD2	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,THYM,UCEC,UCS	BRCA,CESC,KIRC,KIRP
ENSG00000254815	ENSG00000186166	CENATAC	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000187961	KLHL17	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,UCEC	BLCA,BRCA,KIRC
ENSG00000254815	ENSG00000196123	KIAA0895L	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000197774	EME2	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	BRCA,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000197948	FCHSD1	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC	CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000204149	AGAP6	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCEC	KIRC,KIRP
ENSG00000254815	ENSG00000204305	AGER	BLCA,BRCA,KIRC,KIRP,PAAD,UCEC,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000204681	GABBR1	BLCA,BRCA,CHOL,KIRC,KIRP,UCS	CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000205517	RGL3	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,THYM	BLCA,CHOL
ENSG00000254815	ENSG00000205593	DENND6B	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000214021	TTLL3	BLCA,BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCEC	CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000214193	SH3D21	BLCA,BRCA,CHOL,KIRC,OV,PAAD,UCS	CHOL,KIRC
ENSG00000254815	ENSG00000215252	GOLGA8B	BLCA,BRCA,CESC,KIRC,KIRP,OV,PAAD,UCEC	BLCA,KIRC,KIRP
ENSG00000254815	ENSG00000215375	MYL5	BLCA,BRCA,CHOL,KIRC,KIRP,UCEC	KIRC,KIRP
ENSG00000254815	ENSG00000215440	NPEPL1	BLCA,BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC,UCS	CHOL,KIRC
ENSG00000254815	ENSG00000217930	PAM16	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,UCS	KIRC
ENSG00000254815	ENSG00000221978	CCNL2	BLCA,BRCA,KIRC,KIRP,OV,PAAD,UCEC,UCS	BLCA,KIRC,KIRP
ENSG00000254815	ENSG00000273899	NOL12	BLCA,BRCA,CHOL,KIRC,KIRP,PAAD,UCEC	CHOL,KIRC
ENSG00000254815	ENSG00000007516	BAIAP3	BRCA,CESC,CHOL,KIRP,OV,THYM	BRCA
ENSG00000254815	ENSG00000007541	PIGQ	BRCA,CHOL,KIRP,PAAD,UCS	BRCA
ENSG00000254815	ENSG00000060491	OGFR	BRCA,CHOL,KIRC,KIRP,OV,PAAD	KIRC
ENSG00000254815	ENSG00000077463	SIRT6	BRCA,CHOL,KIRC,KIRP,PAAD	CHOL
ENSG00000254815	ENSG00000103126	AXIN1	BRCA,CHOL,KIRC,KIRP,PAAD,UCS	KIRP
ENSG00000254815	ENSG00000103326	CAPN15	BRCA,CHOL,KIRC,KIRP,PAAD	KIRC
ENSG00000254815	ENSG00000105327	BBC3	BRCA,CHOL,KIRC,KIRP,PAAD	BRCA,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000105556	MIER2	BRCA,CHOL,KIRC,KIRP,PAAD	CHOL
ENSG00000254815	ENSG00000107281	NPDC1	BRCA,CESC,CHOL,KIRC,KIRP,UCS	CHOL,KIRC
ENSG00000254815	ENSG00000109736	MFSD10	BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCS	CHOL,KIRP
ENSG00000254815	ENSG00000119640	ACYP1	BRCA,CHOL,KIRC,KIRP,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000124074	ENKD1	BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCEC	KIRP
ENSG00000254815	ENSG00000125731	SH2D3A	BRCA,CHOL,KIRC,KIRP,PAAD,THYM	CHOL
ENSG00000254815	ENSG00000127586	CHTF18	BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCS	BRCA,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000131037	EPS8L1	BRCA,CESC,CHOL,KIRP,OV,PAAD	BRCA,CESC,CHOL
ENSG00000254815	ENSG00000136883	KIF12	BRCA,CESC,CHOL,KIRC,KIRP	BRCA,CHOL
ENSG00000254815	ENSG00000142102	PGGHG	BRCA,CESC,KIRC,KIRP,OV,PAAD,UCEC,UCS	CESC,KIRC,KIRP
ENSG00000254815	ENSG00000143258	USP21	BRCA,CHOL,KIRC,KIRP,PAAD	CHOL
ENSG00000254815	ENSG00000144134	RABL2A	BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000156873	PHKG2	BRCA,CHOL,KIRC,KIRP,PAAD,UCEC	BRCA
ENSG00000254815	ENSG00000160051	IQCC	BRCA,CHOL,KIRC,KIRP,UCS	CHOL
ENSG00000254815	ENSG00000160072	ATAD3B	BRCA,KIRC,KIRP,OV,PAAD	KIRC
ENSG00000254815	ENSG00000160602	NEK8	BRCA,CESC,KIRC,KIRP,THYM	CESC
ENSG00000254815	ENSG00000162572	SCNN1D	BRCA,KIRC,KIRP,OV,PAAD,UCEC,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000164050	PLXNB1	BRCA,CESC,CHOL,KIRP,OV,PAAD,THYM	CESC
ENSG00000254815	ENSG00000164877	MICALL2	BRCA,CHOL,KIRC,KIRP,PAAD,THYM,UCEC,UCS	BRCA,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000165233	CARD19	BRCA,CHOL,KIRC,KIRP,PAAD,UCS	BRCA
ENSG00000254815	ENSG00000169592	INO80E	BRCA,CESC,CHOL,KIRC,KIRP,OV,PAAD,UCEC	KIRC
ENSG00000254815	ENSG00000172830	SSH3	BRCA,CHOL,KIRC,PAAD,THYM,UCS	CHOL
ENSG00000254815	ENSG00000174943	KCTD13	BRCA,CHOL,KIRC,KIRP,PAAD	BRCA,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000177989	ODF3B	BRCA,CHOL,KIRC,KIRP,OV,PAAD	KIRC,KIRP
ENSG00000254815	ENSG00000185917	SETD4	BRCA,CHOL,KIRC,KIRP,OV,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000187535	IFT140	BRCA,CESC,CHOL,KIRC,KIRP,OV,UCS	CHOL
ENSG00000254815	ENSG00000196476	C20orf96	BRCA,CHOL,KIRC,KIRP,OV,UCS	CHOL
ENSG00000254815	ENSG00000197283	SYNGAP1	BRCA,CHOL,KIRC,KIRP,OV	CHOL
ENSG00000254815	ENSG00000213903	LTB4R	BRCA,KIRC,KIRP,OV,THYM,UCEC,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000014914	MTMR11	CESC,CHOL,KIRC,KIRP,PAAD	CHOL,KIRC
ENSG00000254815	ENSG00000046651	OFD1	CESC,CHOL,KIRC,KIRP,PAAD	CHOL
ENSG00000254815	ENSG00000054179	ENTPD2	CESC,CHOL,KIRP,THYM,UCEC	CHOL,KIRP
ENSG00000254815	ENSG00000138002	IFT172	CESC,CHOL,KIRC,KIRP,OV,PAAD	CHOL
ENSG00000254815	ENSG00000154760	SLFN13	CESC,CHOL,KIRC,KIRP,PAAD,UCS	CESC,CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000178026	LRRC75B	CESC,CHOL,KIRC,KIRP,PAAD,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000203485	INF2	CESC,CHOL,KIRC,KIRP,PAAD,UCS	KIRC
ENSG00000254815	ENSG00000204839	MROH6	CESC,KIRC,KIRP,PAAD,UCS	CESC,KIRP
ENSG00000254815	ENSG00000006282	SPATA20	CHOL,KIRC,PAAD,THYM,UCS	CHOL
ENSG00000254815	ENSG00000085733	CTTN	CHOL,KIRC,KIRP,PAAD,THYM	CHOL
ENSG00000254815	ENSG00000104881	PPP1R13L	CHOL,KIRC,KIRP,PAAD,THYM	CHOL,KIRC
ENSG00000254815	ENSG00000105287	PRKD2	CHOL,KIRC,KIRP,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000109046	WSB1	CHOL,KIRC,KIRP,PAAD,THYM	KIRC
ENSG00000254815	ENSG00000120889	TNFRSF10B	CHOL,KIRC,KIRP,PAAD,THYM	KIRC,KIRP
ENSG00000254815	ENSG00000125733	TRIP10	CHOL,KIRC,KIRP,PAAD,THYM	CHOL
ENSG00000254815	ENSG00000130702	LAMA5	CHOL,KIRC,OV,PAAD,THYM	CHOL
ENSG00000254815	ENSG00000145014	TMEM44	CHOL,KIRC,KIRP,PAAD,UCS	CHOL,KIRC,KIRP
ENSG00000254815	ENSG00000167595	PROSER3	CHOL,KIRC,KIRP,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000171219	CDC42BPG	CHOL,KIRP,PAAD,THYM,UCS	CHOL
ENSG00000254815	ENSG00000179832	MROH1	CHOL,KIRC,KIRP,PAAD,UCS	CHOL
ENSG00000254815	ENSG00000182325	FBXL6	CHOL,KIRC,KIRP,PAAD,UCEC,UCS	KIRC
ENSG00000254815	ENSG00000184465	WDR27	CHOL,KIRC,KIRP,OV,PAAD,THYM,UCS	KIRC,KIRP
ENSG00000254815	ENSG00000213923	CSNK1E	CHOL,KIRC,KIRP,PAAD,THYM	CHOL,KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000254815.4	ENST00000527620.4	172	29	544
ENSG00000254815.4	ENST00000527113.1	314	999	1943
ENSG00000254815.4	ENST00000533844.1	63	69	260

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential