 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | HSF1,LRRC14,GPAA1,ARHGAP39,PPP1R16A,MEN1,ELOC,DCAF13,DGAT1,SLC52A2,ZNF16,C8orf33,GLI4,TAF2,RECQL4,LAPTM4B,MFSD3,RAD21,MED20,FBXL6,SCRIB,PUF60,TIGD5,ZC3H3,SHARPIN,MRPL13,CEP85,TGS1,THEM6,NUDCD1,PARS2,DERL1,CPSF1,MROH6,NDUFAF6,TOP1MT,GFUS,PTDSS1,PYCR3,TSNARE1,UBR5,ENY2,C8orf76,TRAPPC9,ZNF34,AGBL5,POC1A,C8orf82,E2F5,MAF1,TONSL | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000254389 | ENSG00000014164 | ZC3H3 | BRCA,KIRP,OV,THYM,UCEC,UVM | BRCA | | | ENSG00000254389 | ENSG00000104522 | GFUS | BRCA,KIRP,OV,THYM,UVM | BRCA | | | ENSG00000254389 | ENSG00000104524 | PYCR3 | BRCA,KIRP,LAML,OV,SKCM,THCA,UCEC,UCS,UVM | BRCA,UCEC | | | ENSG00000254389 | ENSG00000130193 | THEM6 | BRCA,OV,SKCM,THCA,UCEC,UCS,UVM | UCEC | | | ENSG00000254389 | ENSG00000130695 | CEP85 | BRCA,THCA,THYM,UCEC,UVM | BRCA,UCEC | | | ENSG00000254389 | ENSG00000147799 | ARHGAP39 | BRCA,KIRP,OV,THCA,UCEC,UCS,UVM | BRCA | | | ENSG00000254389 | ENSG00000156170 | NDUFAF6 | BRCA,LAML,SKCM,THYM,UCEC | BRCA | | | ENSG00000254389 | ENSG00000160949 | TONSL | BRCA,KIRP,OV,THCA,THYM,UCEC,UVM | BRCA,UCEC | | | ENSG00000254389 | ENSG00000164087 | POC1A | BRCA,THYM,UCEC,UCS,UVM | BRCA,UCEC | | | ENSG00000254389 | ENSG00000164754 | RAD21 | BRCA,OV,SKCM,THYM,UVM | BRCA | | | ENSG00000254389 | ENSG00000164934 | DCAF13 | BRCA,OV,SKCM,THYM,UCEC,UVM | BRCA | | | ENSG00000254389 | ENSG00000172172 | MRPL13 | BRCA,OV,SKCM,THYM,UCEC,UVM | BRCA,UCEC | | | ENSG00000254389 | ENSG00000180900 | SCRIB | BRCA,KIRP,OV,SKCM,UCEC,UVM | BRCA,UCEC | | | ENSG00000254389 | ENSG00000182325 | FBXL6 | BRCA,KIRP,OV,UCEC,UVM | BRCA,UCEC | | | ENSG00000254389 | ENSG00000185000 | DGAT1 | BRCA,OV,SKCM,UCEC,UVM | UCEC | | | ENSG00000254389 | ENSG00000185803 | SLC52A2 | BRCA,KIRP,OV,UCEC,UVM | BRCA,UCEC | | | ENSG00000254389 | ENSG00000189376 | C8orf76 | BRCA,OV,THYM,UCEC,UVM | BRCA | | | ENSG00000254389 | ENSG00000204839 | MROH6 | BRCA,KIRP,OV,UCEC,UVM | BRCA,UCEC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000254389.3 | ENST00000518049.1 | 55 | 46 | 213 |
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