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lncRNA: ENSG00000254109 |
Summary for RBPMS-AS1 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000254109 | Gene symbol | RBPMS-AS1 |
| Gene name | RBPMS antisense RNA 1 | |
| HGNC | 48721 | |
| Entrez ID | 100128750 | |
| Gene type | antisense | |
| Synonyms | 08p12|RBPMS-AS1 | |
| UniProtAcc |
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Structure and expression level for RBPMS-AS1 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000254109 | 9.088165e+01 | 1.729994e+00 | 4.810436e-01 | 3.596334e+00 | 3.227330e-04 | 1.258874e-03 | UP | CHOL |
| ENSG00000254109 | 4.097681e+02 | 1.930048e+00 | 1.851144e-01 | 1.042624e+01 | 1.880000e-25 | 7.820000e-24 | UP | KIRP |
| ENSG00000254109 | 6.820078e+01 | -2.877194e+00 | 1.776802e-01 | -1.619310e+01 | 5.640000e-59 | 1.890000e-57 | DOWN | LUSC |
| ENSG00000254109 | 1.450228e+02 | -1.061878e+00 | 1.790533e-01 | -5.930517e+00 | 3.020000e-09 | 1.280000e-08 | DOWN | LUAD |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000254109 | 4.993637e-01 | 4.792457e-04 | CHOL | 9.619227e-04 |
| ENSG00000254109 | -3.105431e-01 | 1.078821e-13 | LUSC | 2.858874e-12 |
| ENSG00000254109 | -3.118643e-01 | 3.119290e-14 | THCA | 3.815132e-13 |
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lncRNA-Protein interaction for RBPMS-AS1 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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