 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | VSIG10,LRRC75B,SLC26A11,IFT140,PLCD3,PLS1,RBM39,TRIP10,PROSER3,ANKS3,NOXA1,OSBPL7,IQCA1,WSB1,MZF1,IQCE,HES1,RRNAD1,HEXD,LRRC56,SSH3,WDR35,RSRP1,ANKS6,ECHDC2,NEK3,NEK8,CCDC24,SKAP2,USP40,KCP,LCAT,SPIN3,CEBPZOS,DCAF8,OBSL1,MBD6,BBS9,HOXA1,STK36,KIF12,NR2C1,PHYKPL,LTB4R,TRIP6,AMT,EXD3,CCDC191,ACP6,MRNIP,INCA1,MSANTD2,CTDSP1,STAT6 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000253552 | ENSG00000087077 | TRIP6 | BLCA,KICH,KIRC,KIRP,PAAD,THYM | | KICH | | ENSG00000253552 | ENSG00000121310 | ECHDC2 | BLCA,KICH,KIRC,KIRP,STAD | | KICH | | ENSG00000253552 | ENSG00000161328 | LRRC56 | BLCA,KICH,KIRP,THYM,UCS | | KICH | | ENSG00000253552 | ENSG00000161714 | PLCD3 | BLCA,KICH,KIRP,PAAD,THYM | | KICH | | ENSG00000253552 | ENSG00000120756 | PLS1 | KICH,KICH,LAML,LAML,THYM,THYM | | KICH,KICH | | ENSG00000253552 | ENSG00000118965 | WDR35 | KICH,KIRP,LAML,STAD,THYM,UCS | | KICH | | ENSG00000253552 | ENSG00000124006 | OBSL1 | KICH,KIRP,OV,STAD,THYM,UCS | | KICH | | ENSG00000253552 | ENSG00000125733 | TRIP10 | KICH,KIRC,KIRP,PAAD,THYM | | KICH | | ENSG00000253552 | ENSG00000132321 | IQCA1 | KICH,KIRC,KIRP,THYM,UCS | | KICH | | ENSG00000253552 | ENSG00000135253 | KCP | KICH,KIRC,KIRP,OV,PAAD,UCS | | KICH | | ENSG00000253552 | ENSG00000136883 | KIF12 | KICH,KIRC,KIRP,OV,UCS | | KICH | | ENSG00000253552 | ENSG00000178026 | LRRC75B | KICH,KIRC,KIRP,THYM,UCS | | KICH | | ENSG00000253552 | ENSG00000187535 | IFT140 | KICH,KIRC,KIRP,THYM,UCS | | KICH |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000253552.6 | ENST00000518088.4 | 57 | 476 | 646 | | ENSG00000253552.6 | ENST00000522193.1 | 93 | 450 | 169 | | ENSG00000253552.6 | ENST00000517635.2 | 53 | 121 | 282 | | ENSG00000253552.6 | ENST00000518046.1 | 130 | 287 | 679 | | ENSG00000253552.6 | ENST00000593438.1 | 62 | 187 | 2 | | ENSG00000253552.6 | ENST00000523364.1 | 63 | 251 | 442 | | ENSG00000253552.6 | ENST00000517550.1 | 92 | 421 | 699 | | ENSG00000253552.6 | ENST00000517641.1 | 226 | 221 | 901 | | ENSG00000253552.6 | ENST00000521159.4 | 149 | 135 | 581 | | ENSG00000253552.6 | ENST00000521687.4 | 171 | 30 | 545 | | ENSG00000253552.6 | ENST00000524048.1 | 137 | 67 | 480 |
|
