 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | PNO1,MCTS1,KLF16,CENPA | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000251615 | ENST00000505448 | exon_skip_43507 | chr10:84499874-84499959 | -14.48 | -0.2374 | CCSER2 | ENST00000224756 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_150854 | chr17:32366664-32366757 | -13.63 | -0.1725 | ZNF207 | ENST00000321233 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_301267 | chr19:6746028-6746196 | -21.11 | -0.1362 | TRIP10 | ENST00000313244 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_436488 | chr5:96726793-96726859 | -10.58 | -0.2159 | CAST | ENST00000341926,ENST00000395813 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_462554 | chr6:136267028-136267175 | -15.14 | -0.1183 | BCLAF1 | ENST00000531224 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_48327 | chr10:26771074-26771089 | -5.36 | -0.7657 | ABI1 | ENST00000376142 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_89597 | chr12:6672349-6672532 | -27.16 | -0.1552 | ZNF384 | ENST00000361959,ENST00000396801 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_96112 | chr12:109945259-109945349 | -15.07 | -0.1816 | GIT2 | ENST00000355312 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_110809 | chr14:105449358-105449409 | -13.61 | -0.3093 | MTA1 | ENST00000331320 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_111672 | chr14:23089981-23090101 | -17.82 | -0.1713 | ACIN1 | ENST00000262710 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_322579 | chr19:55455635-55455845 | -28.20 | -0.1454 | ISOC2 | ENST00000425675 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_508298 | chr9:136445051-136445111 | -9.44 | -0.1927 | SEC16A | ENST00000313050 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000251615 | ENST00000505448 | exon_skip_62623 | chr11:69079833-69079883 | -9.95 | -0.2689 | TPCN2 | ENST00000294309 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_111863 | chr14:23565815-23565892 | -14.57 | -0.2208 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_148110 | chr17:4892401-4892512 | -17.78 | -0.1954 | MINK1 | ENST00000355280 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_462673 | chr6:138926400-138926481 | -14.23 | -0.2004 | REPS1 | ENST00000450536 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_6398 | chr1:51669433-51669512 | -9.62 | -0.2346 | OSBPL9 | ENST00000428468 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_131398 | chr15:101286213-101286293 | -12.68 | -0.2045 | SNRPA1 | ENST00000254193 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_287763 | chr17:28884224-28884315 | -16.58 | -0.2099 | FLOT2 | ENST00000394908 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_324294 | chr2:27774423-27774530 | -14.12 | -0.1961 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_446942 | chr5:178617343-178617434 | -11.20 | -0.1383 | CLK4 | ENST00000316308 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_462144 | chr6:125298713-125298816 | -13.73 | -0.2179 | HDDC2 | ENST00000398153 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_481821 | chr8:22067084-22067159 | -13.73 | -0.3711 | DMTN | ENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_326917 | chr2:74532618-74532714 | -11.84 | -0.1600 | HTRA2 | ENST00000258080 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_356643 | chr20:35632162-35632234 | -9.58 | -0.1474 | CPNE1 | ENST00000352393,ENST00000397443 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_83420 | chr12:53467804-53467843 | -10.42 | -0.4008 | PCBP2 | ENST00000439930 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_297701 | chr18:678695-678737 | -9.21 | -0.2971 | ENOSF1 | ENST00000251101 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_382458 | chr3:38131595-38131638 | -10.36 | -0.3700 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_451712 | chr6:42880860-42880966 | -15.95 | -0.1792 | RPL7L1 | ENST00000304734,ENST00000493763 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_128719 | chr15:66495329-66495419 | -11.50 | -0.1402 | SNAPC5 | ENST00000316634,ENST00000395589 | In-frame | | ENSG00000251615 | ENST00000505448 | exon_skip_66482 | chr11:126274926-126275021 | -13.99 | -0.1488 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_488959 | chr8:27748494-27748598 | -14.68 | -0.1483 | CCDC25 | ENST00000356537 | Frame-shift | | ENSG00000251615 | ENST00000505448 | exon_skip_504627 | chr9:83973901-83973973 | -15.23 | -0.2769 | HNRNPK | ENST00000351839,ENST00000360384 | In-frame |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8355641-8355726 | 221.00 | -95.47 | 83 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8356086-8356167 | 176.00 | -73.54 | 85 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8357142-8357224 | 174.00 | -89.28 | 82 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8356979-8357058 | 167.00 | -86.15 | 82 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8355142-8355230 | 157.00 | -78.89 | 80 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8357336-8357430 | 155.00 | -89.17 | 88 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8356468-8356550 | 154.00 | -75.49 | 59 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8358098-8358183 | 154.00 | -68.11 | 56 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8356013-8356087 | 152.00 | -79.59 | 74 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8356622-8356705 | 151.00 | -73.30 | 63 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8356359-8356439 | 148.00 | -66.36 | 53 | NA | | ENSG00000251615 | hsa-mir-185 | ENST00000505448 | chr4:8356166-8356241 | 146.00 | -76.29 | 57 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,CC2D2A | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,ZBTB4 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,CLUAP1 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,NFIA | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,SULT1C4 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,TMEM25 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,TEAD1 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,KANK2 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,CALD1 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,ZNF25 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,RUSC2 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,BAZ2B | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,BMPR2 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,PLXNB1 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,MARF1 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,ZMYND11 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,LTBP3 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,EPN2 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,PBX1 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,C5orf24 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,C19orf44 | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,KMT2E | KICH,TGCT,CHOL,SARC,THYM | | ENSG00000251615 | RP11-774O3.3,hsa-mir-185,KANSL1L | KICH,TGCT,CHOL,SARC,THYM |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000251615.3 | ENST00000505448.3 | 86 | 198 | 458 |
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