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lncRNA: ENSG00000249395 |
Summary for CASC9 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000249395 | Gene symbol | CASC9 |
| Gene name | cancer susceptibility 9 | |
| HGNC | 48906 | |
| Entrez ID | 101805492 | |
| Gene type | lincRNA | |
| Synonyms | CASC9|08q21.13 | |
| UniProtAcc |
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Structure and expression level for CASC9 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000249395 | 9.692436e+01 | 7.024699e+00 | 1.637482e+00 | 4.289940e+00 | 1.790000e-05 | 5.364137e-03 | UP | PAAD |
| ENSG00000249395 | 4.647696e+02 | 3.636137e+00 | 3.353491e-01 | 1.084284e+01 | 2.160000e-27 | 9.200000e-26 | UP | HNSC |
| ENSG00000249395 | 8.897935e+01 | 1.986614e+00 | 6.661962e-01 | 2.982026e+00 | 2.863474e-03 | 6.581140e-03 | UP | KIRP |
| ENSG00000249395 | 8.243799e+01 | 4.408525e+00 | 4.168244e-01 | 1.057646e+01 | 3.830000e-26 | 9.860000e-25 | UP | UCEC |
| ENSG00000249395 | 6.670543e+02 | 1.916631e+00 | 4.932769e-01 | 3.885508e+00 | 1.021160e-04 | 1.302604e-03 | UP | ESCA |
| ENSG00000249395 | 6.739614e+02 | 7.454724e+00 | 2.387974e-01 | 3.121777e+01 | 6.120000e-214 | 4.240000e-211 | UP | LUSC |
| ENSG00000249395 | 1.599874e+02 | 5.502707e+00 | 4.221272e-01 | 1.303566e+01 | 7.670000e-39 | 2.430000e-37 | UP | LUAD |
| ENSG00000249395 | 2.099355e+02 | 1.180706e+00 | 2.393355e-01 | 4.933265e+00 | 8.090000e-07 | 3.100000e-06 | UP | COAD |
| ENSG00000249395 | 1.410739e+02 | 3.325785e+00 | 4.974251e-01 | 6.686003e+00 | 2.290000e-11 | 1.650000e-10 | UP | LIHC |
| ENSG00000249395 | 2.971764e+02 | 2.684756e+00 | 3.754479e-01 | 7.150810e+00 | 8.630000e-13 | 1.750000e-11 | UP | STAD |
| ENSG00000249395 | 2.273084e+02 | 1.846123e+00 | 5.029345e-01 | 3.670704e+00 | 2.418840e-04 | 1.637098e-03 | UP | READ |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000249395 | 3.152630e-01 | 4.356344e-14 | LUSC | 1.364328e-12 |
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lncRNA-Protein interaction for CASC9 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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