lncRNAfunc Logo

Home

Download

Statistics

Landscape

Help

Contact
Center for Computational Systems Medicine
leaf

lncRNA summary

leaf

lncRNA structure and expression level

leaf

lncRNA-Protein interaction

leaf

lncRNA-DNA interaction

leaf

lncRNA-RNA interaction

leaf

Variants in lncRNA

leaf

lncRNAs regulate the target genes through functioning as enhancers

leaf

lncRNAs regulate the target genes through recruiting transcript factors

leaf

lncRNAs regulate the alternative splicing events through interacting with splicing factor

leaf

lncRNAs regulate mRNA through targeting the 3'-UTR region

leaf

lncRNAs regulate mRNA by competing with miRNA

leaf

lncRNA coding potential

lncRNA: ENSG00000249087

Summary for ZNF436-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000249087

Gene symbol

ZNF436-AS1

Gene nameZNF436 antisense RNA 1
HGNC

25122

Entrez ID

148898

Gene typeantisense
Synonyms01p36.12|ZNF436-AS1
UniProtAcc

Q8NC38


Top

Structure and expression level for ZNF436-AS1

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002490871.840075e+021.124298e+001.062874e-011.057790e+013.770000e-263.170000e-25UPKIRC
ENSG000002490872.030569e+021.005589e+001.706821e-015.891594e+003.820000e-092.440000e-08UPKIRP
ENSG000002490871.498394e+021.072770e+001.238175e-018.664126e+004.550000e-182.650000e-17UPLUSC

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002490873.142503e-012.111540e-15KIRC9.225177e-15

Top

lncRNA-Protein interaction for ZNF436-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000275023MLLT681.393.6636P55198EpiNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000005339CREBBP77.6194.5836Q92793EpiChIP-seq
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000108799EZH162.8190.114Q92800EpiChIP-seq
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000171456ASXL137.1792.1223Q8IXJ9EpiPredict
ENSG00000249087ENST00000437367ZNF436-AS1ENSG00000146247PHIP83.5893.6982Q8WWQ0EpiNA
ENSG00000249087ENST00000437367ZNF436-AS1ENSG00000185658BRWD170.2494.5963Q9NSI6EpiNA
ENSG00000249087ENST00000437367ZNF436-AS1ENSG00000139613SMARCC256.5292.0829Q8TAQ2EpiChIP-seq
ENSG00000249087ENST00000518821ZNF436-AS1ENSG00000139613SMARCC222.8992.9469Q8TAQ2EpiChIP-seq
ENSG00000249087ENST00000437367ZNF436-AS1ENSG00000117625RCOR322.0990.3893Q9P2K3EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000067369TP53BP194.7193.6591Q12888EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000116731PRDM291.0596.6153Q13029TF,EpiPredict
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000114982KANSL388.8994.9817Q9P2N6EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000168137SETD585.1592.89Q9C0A6EpiPredict
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000171316CHD785.091.0103Q9P2D1EpiChIP-seq
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000146247PHIP83.5893.7824Q8WWQ0EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000185658BRWD182.1795.1795Q9NSI6EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000101126ADNP77.4494.9487Q9H2P0TF,EpiChIP-seq
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000147130ZMYM377.2197.0Q14202EpiPredict
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000197724PHF276.1591.9627O75151EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000171316CHD775.1893.515Q9P2D1EpiChIP-seq
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000185658BRWD170.2495.0371Q9NSI6EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000182979MTA169.7294.7343Q13330EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000139613SMARCC265.4496.2671Q8TAQ2EpiChIP-seq
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000187605TET362.6393.1797O43151TF,EpiPredict
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000147133TAF162.092.357P21675EpiChIP-seq
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000010803SCMH160.8294.2057Q96GD3TF,EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000139613SMARCC256.5292.2954Q8TAQ2EpiChIP-seq
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000121741ZMYM253.8695.8404Q9UBW7EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000272333KMT2B42.5191.7515Q9UMN6TF,EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000157259GATAD122.1692.7086Q8WUU5EpiChIP-seq
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000117625RCOR319.190.0765Q9P2K3EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000280789PAGR118.2194.2445Q9BTK6EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000112511PHF17.8890.5704O43189TF,EpiNA
ENSG00000249087ENST00000437367ZNF436-AS1ENSG00000005339CREBBP68.7592.8041Q92793EpiChIP-seq
ENSG00000249087ENST00000518821ZNF436-AS1ENSG00000115524SF3B121.1390.2237O75533EpiNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000171316CHD782.1595.5899Q9P2D1EpiChIP-seq
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000181090EHMT180.3594.7661Q9H9B1EpiNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000185658BRWD177.7992.1447Q9NSI6EpiNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000139613SMARCC263.4996.9534Q8TAQ2EpiChIP-seq
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000120616EPC151.3593.1244Q9H2F5EpiNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000117625RCOR330.7592.225Q9P2K3EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000155363MOV10103.6895.1839Q9HCE1RBP,EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000123636BAZ2B98.0495.1977Q9UIF8TF,EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000170322NFRKB91.5692.1835Q6P4R8EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000108799EZH175.8794.3658Q92800EpiChIP-seq
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000108557RAI172.0194.1852Q7Z5J4EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000065717TLE271.1392.4002Q04725EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000005339CREBBP68.7595.4049Q92793EpiChIP-seq
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000115524SF3B167.0897.2661O75533EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000186532SMYD462.9295.4279Q8IYR2EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000108799EZH153.9391.6028Q92800EpiChIP-seq
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000197114ZGPAT52.7292.7295Q8N5A5TF,EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000117713ARID1A36.1691.3297O14497EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000120071KANSL135.2891.1734Q7Z3B3EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000163517HDAC1133.8890.6946Q96DB2EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000171456ASXL131.2693.6117Q8IXJ9EpiPredict
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000162227TAF6L30.1193.8484Q9Y6J9EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000133895MEN128.394.8581O00255EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000168395ING528.291.54Q8WYH8EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000185619PCGF323.6592.0346Q3KNV8EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000156858PRR1419.8994.0522Q9BWN1EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000156860FBRS16.0292.5824Q9HAH7EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000149929HIRIP314.7292.8802Q9BW71EpiPredict
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000119760SUPT7L5.6792.4609O94864EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000167967E4F185.5792.6939Q66K89TFNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000167232ZNF9159.5590.3362Q05481TFNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000175395ZNF255.8291.1356P17030TFNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000123636BAZ2B98.0494.8551Q9UIF8TF,EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000116731PRDM291.0596.3488Q13029TF,EpiPredict
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000170581STAT284.4194.2785P52630TFChIP-seq
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000101126ADNP77.4494.5799Q9H2P0TF,EpiChIP-seq
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000236287ZBED576.0495.3184Q49AG3TFNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000130254SAFB274.1592.683Q14151TF,RBPeCLIP,catRAPID
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000167232ZNF9171.4896.2094Q05481TFNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000105127AKAP866.7891.0128O43823TFNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000196867ZFP2865.0190.4265Q8NHY6TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000198521ZNF4364.4395.6206P17038TFNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000187605TET362.6392.691O43151TF,EpiPredict
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000010803SCMH160.8293.4778Q96GD3TF,EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000126464PRR1260.3596.2211Q9ULL5TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000147789ZNF760.1194.4359P17097TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000197114ZGPAT52.7292.9916Q8N5A5TF,EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000167232ZNF9152.4793.4422Q05481TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000197857ZNF4447.5495.4952P15621TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000186272ZNF1747.495.3317P17021TFNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000126464PRR1246.7190.7197Q9ULL5TFNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000272333KMT2B42.5191.545Q9UMN6TF,EpiNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000146587RBAK39.690.0092Q9NYW8TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000168661ZNF3039.693.7685P17039TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000105708ZNF1437.8392.5944P17017TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000102878HSF427.0493.1536Q9ULV5TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000140993TIGD726.9394.1912Q6NT04TFNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000126705AHDC126.4990.8516Q5TGY3TFPredict
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000256223ZNF1022.3993.1837P21506TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000177463NR2C217.6592.7055P49116TFNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000256223ZNF1016.5790.1484P21506TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000118922KLF1215.7994.458Q9Y4X4TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000109381ELF215.6192.4267Q15723TFChIP-seq
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000120798NR2C114.793.2866P13056TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000196378ZNF3412.4995.1522Q8IZ26TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000175395ZNF259.2494.0186P17030TFNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000112511PHF17.8890.6985O43189TF,EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000162599NFIA7.7191.7683Q12857TFNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000155363MOV10103.6894.8041Q9HCE1RBP,EpiNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000013573DDX1188.6496.4528Q96FC9RBPNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000079134THOC182.0892.0567Q96FV9RBPNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000122965RBM1981.7496.3285Q9Y4C8RBPNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000106344RBM2880.0295.1607Q9NW13RBPNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000139746RBM2674.6896.7503Q5T8P6RBPNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000130254SAFB274.1594.0851Q14151TF,RBPeCLIP,catRAPID
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000004534RBM672.3391.3799P78332RBPPredict
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000106344RBM2864.6293.076Q9NW13RBPNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000137776SLTM64.0595.211Q9NWH9RBPNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000071894CPSF163.3491.0572Q10570RBPPAR-CLIP,catRAPID
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000133226SRRM148.8393.3063Q8IYB3RBPNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000135870RC3H145.9790.7997Q5TC82RBPNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000124193SRSF635.395.2796Q13247RBPNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000133226SRRM127.3295.2025Q8IYB3RBPNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000167978SRRM221.297.0331Q9UQ35RBPNA
ENSG00000249087ENST00000335648ZNF436-AS1ENSG00000254726MEX3A19.894.043A1L020RBPNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000116350SRSF415.8192.2584Q08170RBPNA
ENSG00000249087ENST00000518600ZNF436-AS1ENSG00000089280FUS10.6791.2562P35637RBPHITS-CLIP,PAR-CLIP
ENSG00000249087ENST00000458053ZNF436-AS1ENSG00000139746RBM2660.6693.7331Q5T8P6RBPNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000135870RC3H150.1590.4971Q5TC82RBPNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000133226SRRM133.9794.5462Q8IYB3RBPNA
ENSG00000249087ENST00000454117ZNF436-AS1ENSG00000167978SRRM223.9695.8248Q9UQ35RBPNA
ENSG00000249087ENST00000437367ZNF436-AS1ENSG00000135870RC3H145.9790.3722Q5TC82RBPNA
ENSG00000249087ENST00000518821ZNF436-AS1ENSG00000013573DDX1132.4490.0578Q96FC9RBPNA
ENSG00000249087ENST00000518821ZNF436-AS1ENSG00000139746RBM2624.2991.2396Q5T8P6RBPNA

Top

lncRNA-DNA interaction for ZNF436-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for ZNF436-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
PSMD1,PFN1,ACTB,HSPA8,ORAI1
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000249087ENST00000518600exon_skip_59439chr11:57737912-57738026-10.52-0.1119TMX2ENST00000278422In-frame

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000249087ENST00000437367exon_skip_7523chr1:78660553-78660654-10.13-0.1192IFI44ENST00000370747Frame-shift
ENSG00000249087ENST00000518600exon_skip_111863chr14:23565815-23565892-12.64-0.2341AP1G2ENST00000308724,ENST00000397120Frame-shift
ENSG00000249087ENST00000518600exon_skip_327433chr2:86125794-86125880-7.94-0.1369PTCD3ENST00000254630Frame-shift
ENSG00000249087ENST00000518600exon_skip_382458chr3:38131595-38131638-7.99-0.9988ACAA1ENST00000333167Frame-shift
ENSG00000249087ENST00000518821exon_skip_431827chr4:109696409-109696486-8.06-0.1521CASP6ENST00000265164Frame-shift
ENSG00000249087ENST00000437367exon_skip_470226chr7:103307595-103307708-10.80-0.1102PMPCBENST00000249269Frame-shift

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

Top

Variants for ZNF436-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA-RBP complex negative regulation
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type
ENSG00000249087ENSG00000079134THOC1exon_skip_382458ENSG00000060971:chr3:38131595-38131638ACAA1ENST00000333167Frame-shiftPRAD,UCS,PAAD,TGCT,THCA

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation

Top

lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

Top

lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000249087.5ENST00000458053.36929238
ENSG00000249087.5ENST00000454117.1571700
ENSG00000249087.5ENST00000335648.3176237767
ENSG00000249087.5ENST00000518821.117518472374
ENSG00000249087.5ENST00000437367.3106142459
ENSG00000249087.5ENST00000518600.19848344