 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | PIK3R4,NMNAT3,CPLANE1,FAM172A,XRN1,PDCD10,CEP63,RALGAPA1,TAF9B,TMEM17,SMG7,IFT22,ANGEL2,CEP68,NEK11,BBOF1,ZXDC,RAB6B,SPICE1,GSK3B,HLTF,DBR1,GPATCH2,ASTE1,KPNA1,ZFP14,WDR5B,CCDC14,UBXN7,PTCD2,N6AMT1,ODR4,OSGEPL1,IMMP2L,CHD6,ATR,SCYL3,PPP1R2,ANAPC13,NDUFB5,ORC4,KIF27,MLF1,BBS10,IFT80,FAN1,BBIP1,TTC30A,TIMMDC1,THAP6,GGPS1,C12orf66,TBCCD1,MAP3K13,CEP19,CETN2,NBPF11,XPNPEP3,ZC3H8,HEXIM2,MRPS22,CEP290,DZIP3,GTF2E1,NEPRO,ZFP62,COX15,RUVBL1,ZBED8,C12orf76,FAM228B,DLG1,TOPBP1,COQ7,CCDC121,ATP6V1E2,PHC3,METTL6,RSRC1,CCDC191,ANKRD26,LRTOMT,COPB2,DUSP28,DHX36,TXNRD3,MBTD1,DMAC2L,PFN2,COA5,TRMT61B,CRBN,RYK,TMCC1,THNSL1,PRPF40B,PHOSPHO2,NCK1,NSUN3,RUFY2,NCBP2,LMLN | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SLC9A1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000248932 | ENSG00000070087 | PFN2 | GBM,LUSC,THYM,UCEC,UCS | LUSC | | | ENSG00000248932 | ENSG00000071794 | HLTF | GBM,LGG,LUSC,TGCT,UCEC,UCS | LUSC | | | ENSG00000248932 | ENSG00000113838 | TBCCD1 | GBM,LGG,LUSC,TGCT,UCS | LUSC | | | ENSG00000248932 | ENSG00000114209 | PDCD10 | GBM,LUSC,TGCT,UCEC,UCS | LUSC | | | ENSG00000248932 | ENSG00000114503 | NCBP2 | GBM,LAML,LGG,LUSC,UCS | LUSC | | | ENSG00000248932 | ENSG00000136521 | NDUFB5 | GBM,LUSC,TGCT,THYM,UCEC,UCS | LUSC | | | ENSG00000248932 | ENSG00000163864 | NMNAT3 | GBM,LUSC,PRAD,THYM,UCS | LUSC | | | ENSG00000248932 | ENSG00000174891 | RSRC1 | GBM,LAML,LUSC,TGCT,THYM,UCS | LUSC | | | ENSG00000248932 | ENSG00000175792 | RUVBL1 | GBM,LUSC,OV,PRAD,UCEC,UCS | LUSC | | | ENSG00000248932 | ENSG00000186889 | TMEM17 | GBM,LAML,LUSC,TGCT,UCEC | LUSC | | | ENSG00000248932 | ENSG00000250565 | ATP6V1E2 | GBM,LGG,LUSC,TGCT,UCS | LUSC | | | ENSG00000248932 | ENSG00000075711 | DLG1 | LAML,LUSC,TGCT,UCEC,UCS | LUSC | | | ENSG00000248932 | ENSG00000163781 | TOPBP1 | LAML,LGG,LUSC,TGCT,UCS | LUSC | | | ENSG00000248932 | ENSG00000163960 | UBXN7 | LAML,LGG,LUSC,TGCT,UCEC,UCS | LUSC | | | ENSG00000248932 | ENSG00000174206 | C12orf66 | LAML,LUSC,TGCT,THYM,UCEC | LUSC | | | ENSG00000248932 | ENSG00000154917 | RAB6B | LUSC,OV,TGCT,THYM,UCS | LUSC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000248932.4 | ENST00000504670.4 | 65 | 4 | 201 | | ENSG00000248932.4 | ENST00000507362.4 | 61 | 112 | 297 | | ENSG00000248932.4 | ENST00000512622.1 | 73 | 301 | 522 | | ENSG00000248932.4 | ENST00000510068.4 | 74 | 402 | 178 | | ENSG00000248932.4 | ENST00000515247.4 | 66 | 282 | 482 | | ENSG00000248932.4 | ENST00000514729.1 | 60 | 76 | 258 | | ENSG00000248932.4 | ENST00000381790.3 | 78 | 283 | 47 |
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