 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,CEBPZ,NCOA2,TBX3,PUM1,XRN1,BCL6,KLF9,CPEB2,PBX2,RBM39,KLF12,ZBTB4,GLYR1,KLF7,LCORL,RBM7,MYSM1,CSDE1,RBM23,RFX5,AKAP8,ZNF2,ARID2,ZXDC,SUGP2,MAFG,RARB,DMTF1,ELF1,VEZF1,RBM27,ZNF70,BAZ2A,ZNF24,DDX52,RORA,ATF6B,SNAI2,TBP,GABPA,IKZF5,NFKB1,ZBED4,MEF2C,GRHL2,GLIS3,ZMAT3,TET3,ZBTB5,ZFP14,ZXDA,RNPC3,ZFP69,BARD1,TRPS1,KDM5B,NOP9,ATMIN,ZNF25,LARP7,TRNT1,PNPT1,CNOT4,SON,CWC22,DDX59,ZBED5,ZZZ3,TTC14,ZBED3,RBM4,DDX60,STAT3,SMAD9,MEX3C,CREB1,RC3H1,SP100,HIF1A,EEA1,ZNF44,ZFP91,RBMX,AGO2,RBMS3,TIGD6,RBM26,ZFP1,ZIK1,PURB,GZF1,ADNP,NCBP1,MYEF2,PPIL4,MBD1,IKZF4,PUS7L,ASH1L,CLOCK,NFIA,CASC3,FUBP1,ARNT2,ZFP30,SP4,RBM43,KLF11,LIN54,TCF20,AGFG1,UBR5,THAP9,THOC2,DDX6,TSN,ZBTB6,THAP6,DDX17,ZBTB2,SRRM2,PUS7,RFX7,E2F6,AQR,ZNF22,SP2,FMR1,LCOR,ZHX3,FOXJ3,KLF3,PURA,ZNF41,KLF15,ZC3H8,TTF1,RBM41,SART3,THAP1,DZIP3,SRBD1,IRF2,PAIP1,ZNF28,CPSF2,ZNF45,CELF1,PSPC1,KRR1,TMF1,ELK4,RBM45,TIGD1,NFXL1,PRDM2,BACH1,AHR,RBM18,HOMEZ,UNC50,SALL2,MYNN,TFCP2,PATL1,ZMAT1,ZNF83,SKIL,QKI,ZFR,NXF1,STAU1,ZFX,NAF1,NKRF,NR2C2,EIF2D,SYNJ1,SIX5,SALL1,GPBP1,C1D,ARNT,ZNF14,G3BP2,PLS1,LSM11,ZFHX3,DZIP1,PUM2,XPO1,FXR2,RBM5,CPEB3,ELF2,SMAD4,TIGD2,RBMS1,NFYB,ZNF43,PTBP3,ZFP28,MTF1,SP3,ZNF17,ZNF84,DDX42,BAZ2B,RXRB,ZHX2,CSTF2,AHDC1,KMT2A,PDCD4,ZEB2,NACC2,AKAP1,GLMP,SF3A1,DACH1,ZFP3,MEF2D,TEP1,MECOM,ADAT1,ZBED6,XPO5,ETV3,SOX6,TET2,TDRKH,RBM33,NOL8,ATF2,ZNF10 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CENPB,PUSL1,NR1H2,LSM4,SLIRP,PA2G4,EIF3G,DDX41,THOC6,LSM7,RNPS1,PIN1,DDX56,DDX49,USF2,RBM10,KLF16,ATF4,IRF3,RBM42,MBD3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000248866 | ENST00000503051 | exon_skip_52894 | chr10:98431130-98431291 | -23.02 | -0.1514 | HPS1 | ENST00000325103,ENST00000361490 | Frame-shift | | ENSG00000248866 | ENST00000503051 | exon_skip_110809 | chr14:105449358-105449409 | -16.80 | -0.4308 | MTA1 | ENST00000331320 | In-frame | | ENSG00000248866 | ENST00000503051 | exon_skip_436646 | chr5:103183233-103183407 | -17.59 | -0.1086 | PPIP5K2 | ENST00000358359 | In-frame | | ENSG00000248866 | ENST00000503051 | exon_skip_484062 | chr8:73030335-73030395 | -11.23 | -0.3035 | TERF1 | ENST00000276603 | In-frame | | ENSG00000248866 | ENST00000503051 | exon_skip_500548 | chr9:131494404-131494486 | -13.71 | -0.2176 | PRRC2B | ENST00000357304 | Frame-shift | | ENSG00000248866 | ENST00000503051 | exon_skip_363747 | chr22:23877720-23877869 | -28.37 | -0.2149 | SLC2A11 | ENST00000345044 | Frame-shift |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000248866 | ENSG00000120756 | PLS1 | CHOL,HNSC,KICH,KIRC,LAML,PAAD,THYM | | KICH |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000248866.1 | ENST00000503051.1 | 64 | 502 | 308 |
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