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lncRNA: ENSG00000248801 |
Summary for C8orf34-AS1 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000248801 | Gene symbol | C8orf34-AS1 |
| Gene name | C8orf34 antisense RNA 1 | |
| HGNC | 27840 | |
| Entrez ID | 286189 | |
| Gene type | antisense | |
| Synonyms | C8orf34-AS1|RP11-664D7.4|08q13.2 | |
| UniProtAcc |
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Structure and expression level for C8orf34-AS1 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000248801 | 1.160322e+02 | 1.087865e+00 | 3.177089e-01 | 3.424095e+00 | 6.168510e-04 | 1.647078e-03 | UP | UCEC |
| ENSG00000248801 | 5.740421e+02 | 1.091336e+00 | 1.701779e-01 | 6.412915e+00 | 1.430000e-10 | 1.070000e-09 | UP | PRAD |
| ENSG00000248801 | 1.705098e+02 | -2.996306e+00 | 3.172988e-01 | -9.443169e+00 | 3.620000e-21 | 2.510000e-20 | DOWN | LUSC |
| ENSG00000248801 | 3.324767e+02 | -1.437853e+00 | 2.602066e-01 | -5.525815e+00 | 3.280000e-08 | 1.250000e-07 | DOWN | LUAD |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000248801 | -3.044836e-01 | 4.896013e-14 | LUAD | 5.378082e-13 |
| ENSG00000248801 | -3.471732e-01 | 6.133664e-17 | LUSC | 5.282618e-15 |
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lncRNA-Protein interaction for C8orf34-AS1 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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