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lncRNA: ENSG00000248367

Summary for CTB-129O4.1

Gene summary

Gene information	Ensembl ID	ENSG00000248367
	Gene symbol	CTB-129O4.1
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for CTB-129O4.1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000248367	2.709547e+01	-1.196137e+00	3.874661e-01	-3.087075e+00	2.021364e-03	6.981559e-03	DOWN	GBM
ENSG00000248367	3.754841e+01	2.118499e+00	3.962363e-01	5.346554e+00	8.960000e-08	7.190000e-07	UP	CHOL
ENSG00000248367	3.828303e+01	1.470602e+00	1.600512e-01	9.188325e+00	3.990000e-20	2.420000e-19	UP	KIRC
ENSG00000248367	4.818721e+01	1.041209e+00	2.372063e-01	4.389466e+00	1.140000e-05	3.750000e-05	UP	KICH
ENSG00000248367	4.534027e+01	1.058575e+00	2.356288e-01	4.492552e+00	7.040000e-06	2.660000e-05	UP	KIRP
ENSG00000248367	6.490289e+01	1.391738e+00	1.729153e-01	8.048670e+00	8.370000e-16	1.220000e-14	UP	PRAD
ENSG00000248367	3.229842e+01	1.380463e+00	1.560792e-01	8.844630e+00	9.180000e-19	8.530000e-18	UP	LUAD
ENSG00000248367	2.686346e+01	1.746764e+00	3.884387e-01	4.496884e+00	6.900000e-06	7.110000e-05	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000248367	6.059259e-01	1.030264e-05	CHOL	7.203087e-05
ENSG00000248367	3.203183e-01	5.664052e-16	KIRC	2.682972e-15

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lncRNA-Protein interaction for CTB-129O4.1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for CTB-129O4.1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CTB-129O4.1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

IDH3A,NEK4,RPRD2,PSMD2,RNF123,TBC1D5,BECN1,RDX,SMARCC2,NBN,QSER1,PPP1R12A,GNL3L,TRIP11,TBC1D15,EIF4G1,RAB7A,NEDD1,PBX1,ANKRD28,PSMC1,SRP72,MAN1A2,ATP11B,SNX19,VPS35L,PHF3,WWP1,PAK2,TMEM127,ARID1B,STRN,NMD3,GOLIM4,SURF4,LRP10,KIDINS220,CDC27,TMCO3,GANAB,TLN1,RNF38,PSME3,RAB35,RB1CC1,SMAD1,WIPF2,CLPX,SEC22B,LPCAT3,TM7SF3,ZFAND3,TP53BP2,VPS35,BRPF3,YAP1,COMMD2,MAIP1,OSBPL8,FBH1,SNX3,AZI2,ACTR2,DCAF7,VAMP7,RBM7,NSF,SEC23B,MED1,NUP58,TGOLN2,HBP1,EIF4G2,NAA50,CUL2,SMG8,CAB39,HUWE1,PRKAR1A,BACH1,BTD,FNDC3B,ATF1,SLC39A9,PAFAH1B2,PNPO,VPS4B,SNX12,TRAPPC11,TRMT61B,SCP2,EHBP1,UBXN7,ITGB1,BZW1,SLAIN2,NDEL1,ARIH1,PUM1,SEC24B,RABL3,KCTD10,CTNNB1,BCL2L13,SERPINB8,TP53BP1,VPS37A,USP32,G3BP1,MORF4L1,FERMT2,SLC25A24,PRMT5,PINK1,TWF1,C9orf64,DDX3X,ASXL2,ALAS1,GOLGA7,POLR2B,FRYL,RGP1,ASH1L,SLC35A5,RAB18,GNPTAB,C16orf70,DNAJC13,NPTN,WDR7,GALK2,ARF3,TMEM131,GNE,USP46,SMG6,ADNP2,SPRING1,NUP98,BMPR2,ST13,CDK12,TRIP12,MICU1,GTF2A1,TFIP11,GGCX,CSNK1A1,SETD7,EPRS1,ELF1,UGGT1,VRK2,TAF2,TEX2,PLAA,PDCD10,HEATR5A,FEM1B,AMBRA1,TMBIM6,HAUS2,WSB2,TAF5L,SCAF11,NF1,CEBPZ,LPIN2,TSTD2,FEZ2,ERLIN1,UBAP1,MYH9,FCF1,RTL6,SEPTIN10,UBR1,NOP9,PIP4K2C,TSR1,MEF2D,ADAM10,ARPP19,ARMT1,VPS26A,CAP1,VGLL4,SH3GLB1,LRRC59,DCAF6,KTN1,ATP2C1,ILK,ACO2,FARP2,UBE2D3,OTUD4,DYNC1I2,DOCK7,SEPTIN11,RFFL,CLIP1,CORO1C,RNF19B,NCOA2,CCSER2,AP2B1,RNF169,CHMP3,CNIH1,FAM168A,PRKAR2A,TBC1D2B,ARHGEF12,RAB11FIP1,RAB5C,SSR1,USP9X,DESI2,UEVLD,YWHAZ,DCTN1,TGFBRAP1,UHRF1BP1,COG5,SSH1,CHURC1,TMLHE,KLHL5,CCNYL1,PIGS,REST,EIF3L,PLS1,SEC62,SOS2,LARS2,BACE1,RANBP2,IL6ST,USP8,PICALM,CHM,FYTTD1,SNX18,TECPR2,ITFG1,ABCD3,ECD,CSTF2,GLYR1,TUBA1B,GSK3B,QKI,VPS26C,AEBP2,NT5C2,HIPK1,RNF40,PIK3CB,TACC1,CDKL5,TRAPPC10,PSEN1,CEP104,HBS1L,PTPN11,SCYL2,PLEKHB2,POLR2A,ANKFY1,SCFD2,CLTC,ATRN,PARG,SDHC,FRMD6,ATP2A2,LZIC,CCDC47,HSPA8,M6PR,APAF1,GBF1,BBX,CDYL,TAF1,PCNX1,ERLIN2,UBR4,IQGAP1,SMARCA2,SLMAP,CLCN3,SDCBP,FBXW11,STK24,BPTF,MPDZ,COPB2,ARSB,TEAD1,SCARB2,PDLIM5,DYNC1LI2,KBTBD4,ZC3H15,ZNF106,APP,PTPN9,SF3A1,SEPTIN2,COG6,DDB1,ABHD5,SERINC3,FAM120B,SYNJ1,TBC1D23,GTF3C4,TNPO1,PGM3,NEK7,RO60,HEATR5B,BIRC6,ACADM,SEC31A,CYFIP1,LSM12,ARL2BP,TMEM184C,CDC42BPB,RALB,USP10,AFAP1,AHNAK,MCFD2,NDUFS1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000248367	ENST00000504573	exon_skip_123601	chr15:74897010-74897219	-19.31	-0.1055	MPI	ENST00000352410	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_296625	chr18:42057882-42058051	-18.51	-0.2644	PIK3C3	ENST00000262039	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_370518	chr22:50247691-50247776	-17.67	-0.2295	HDAC10	ENST00000216271	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_110959	chr14:20372732-20372857	-16.30	-0.1304	TEP1	ENST00000262715	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_309204	chr19:49181348-49181461	-18.43	-0.1881	TRPM4	ENST00000252826	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_380242	chr3:186784961-186785101	-14.24	-0.1017	EIF4A2	ENST00000323963	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_382458	chr3:38131595-38131638	-12.67	-0.3249	ACAA1	ENST00000333167	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_514339	chrX:23713134-23713208	-6.28	-0.1142	ACOT9	ENST00000336430	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_7523	chr1:78660553-78660654	-12.01	-0.1365	IFI44	ENST00000370747	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_9446	chr1:147270931-147271005	-7.50	-0.1500	CHD1L	ENST00000369258	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_16568	chr1:201989382-201989531	-17.11	-0.1172	RNPEP	ENST00000295640	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_41813	chr10:68337857-68337996	-14.31	-0.1173	HNRNPH3	ENST00000265866	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_41841	chr10:68756272-68756483	-22.55	-0.1151	CCAR1	ENST00000265872	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_53559	chr10:101793912-101793998	-12.34	-0.2128	OGA	ENST00000361464	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_59071	chr11:47234756-47234934	-15.40	-0.1149	DDB2	ENST00000256996	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_66482	chr11:126274926-126275021	-10.56	-0.1214	FOXRED1	ENST00000263578	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_74009	chr11:64773429-64773505	-16.32	-0.2365	SF1	ENST00000377390	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_87733	chr12:120571190-120571291	-15.72	-0.1828	RNF10	ENST00000325954	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_92074	chr12:50142052-50142110	-9.45	-0.1687	CERS5	ENST00000317551	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_95407	chr12:95040475-95040597	-12.01	-0.1044	NR2C1	ENST00000333003	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_104545	chr13:102767272-102767478	-14.61	-0.1133	TEX30	ENST00000376032	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_111863	chr14:23565815-23565892	-12.82	-0.2137	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_111870	chr14:23566561-23566686	-15.57	-0.1455	AP1G2	ENST00000397120	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_114365	chr14:74290026-74290118	-13.77	-0.1583	ABCD4	ENST00000356924	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_139422	chr16:89114338-89114487	-18.59	-0.1754	ACSF3	ENST00000317447,ENST00000406948	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_290158	chr17:42953723-42953778	-8.41	-0.2403	AARSD1	ENST00000427569	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_292904	chr17:69251746-69251866	-11.77	-0.1612	ABCA5	ENST00000392676,ENST00000588877	In-frame
ENSG00000248367	ENST00000504573	exon_skip_302168	chr19:10680345-10680443	-9.84	-0.1144	ILF3	ENST00000590261	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_319223	chr19:43526200-43526349	-18.37	-0.2482	ETHE1	ENST00000292147	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_324294	chr2:27774423-27774530	-12.73	-0.1340	MRPL33	ENST00000296102	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_326885	chr2:74490024-74490127	-18.72	-0.2013	TTC31	ENST00000233623	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_350725	chr20:35500048-35500169	-13.76	-0.1376	CEP250	ENST00000397527	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_353131	chr20:58669290-58669453	-23.77	-0.1674	STX16	ENST00000371141	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_363747	chr22:23877720-23877869	-24.46	-0.5204	SLC2A11	ENST00000345044	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_377198	chr3:123130479-123130616	-16.84	-0.1266	PDIA5	ENST00000316218	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_384420	chr3:49812647-49812738	-13.28	-0.1819	UBA7	ENST00000333486	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_430434	chr4:82356536-82356683	-19.45	-0.1462	HNRNPD	ENST00000313899	In-frame
ENSG00000248367	ENST00000504573	exon_skip_433210	chr4:177436275-177436351	-7.48	-0.1662	AGA	ENST00000264595	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_436035	chr5:79656957-79657001	-13.70	-0.6850	TENT2	ENST00000296783,ENST00000428308,ENST00000453514	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_442657	chr5:74730259-74730398	-12.94	-0.1097	GFM2	ENST00000296805,ENST00000509430	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_445390	chr5:150403120-150403312	-21.28	-0.1267	CD74	ENST00000009530	In-frame
ENSG00000248367	ENST00000504573	exon_skip_446758	chr5:178212972-178213103	-15.95	-0.1437	PHYKPL	ENST00000308158	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_470226	chr7:103307595-103307708	-13.55	-0.1411	PMPCB	ENST00000249269	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_511212	chrX:71555189-71555385	-20.15	-0.1132	OGT	ENST00000373719	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_5818	chr1:45568484-45568684	-18.82	-0.1120	AKR1A1	ENST00000351829,ENST00000372070	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_29583	chr1:114780109-114780215	-11.49	-0.1352	SIKE1	ENST00000060969	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_85725	chr12:88040147-88040265	-8.12	-0.1425	C12orf29	ENST00000356891	Frame-shift
ENSG00000248367	ENST00000504573	exon_skip_89597	chr12:6672349-6672532	-23.23	-0.2212	ZNF384	ENST00000361959,ENST00000396801	In-frame
ENSG00000248367	ENST00000504573	exon_skip_340759	chr2:85552415-85552567	-15.05	-0.1003	GGCX	ENST00000233838	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000248367	hsa-mir-22	ENST00000504573	chr5:180293414-180293497	171.00	-75.23	83	NA
ENSG00000248367	hsa-mir-22	ENST00000504573	chr5:180293275-180293353	166.00	-73.03	82	NA
ENSG00000248367	hsa-mir-22	ENST00000504573	chr5:180293500-180293585	147.00	-77.45	79	NA

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Variants for CTB-129O4.1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000248367	ENST00000504573	MAIP1	ENSG00000162972	ENST00000435773	-0.1815	1	-	CHOL
ENSG00000248367	ENST00000504573	SEC62	ENSG00000008952	ENST00000487736	-0.1004	1	-	CHOL
ENSG00000248367	ENST00000504573	SERPINB8	ENSG00000166401	ENST00000397985	-0.1071	1	GBM	CHOL,KICH
ENSG00000248367	ENST00000504573	SERPINB8	ENSG00000166401	ENST00000353706	-0.1071	1	GBM	CHOL,KICH
ENSG00000248367	ENST00000504573	SERPINB8	ENSG00000166401	ENST00000542677	-0.1071	1	GBM	CHOL,KICH
ENSG00000248367	ENST00000504573	ALAS1	ENSG00000023330	ENST00000484952	-0.4779	1	-	CHOL,KIRC
ENSG00000248367	ENST00000504573	ALAS1	ENSG00000023330	ENST00000493402	-0.4779	1	-	CHOL,KIRC
ENSG00000248367	ENST00000504573	FERMT2	ENSG00000073712	ENST00000399304	-0.1034	1	-	CHOL,PRAD,LUAD,READ
ENSG00000248367	ENST00000504573	MPDZ	ENSG00000107186	ENST00000538841	-0.1025	140	-	CHOL
ENSG00000248367	ENST00000504573	MPDZ	ENSG00000107186	ENST00000536827	-0.1272	94	-	CHOL
ENSG00000248367	ENST00000504573	MPDZ	ENSG00000107186	ENST00000447879	-0.1404	152	-	CHOL
ENSG00000248367	ENST00000504573	MPDZ	ENSG00000107186	ENST00000546205	-0.4340	314	-	CHOL
ENSG00000248367	ENST00000504573	ERLIN1	ENSG00000107566	ENST00000407654	-0.1257	1	-	CHOL
ENSG00000248367	ENST00000504573	PNPO	ENSG00000108439	ENST00000584061	-0.1083	1	-	CHOL
ENSG00000248367	ENST00000504573	PNPO	ENSG00000108439	ENST00000585320	-0.1171	1	-	CHOL
ENSG00000248367	ENST00000504573	GGCX	ENSG00000115486	ENST00000430215	-0.1314	37	-	CHOL
ENSG00000248367	ENST00000504573	GGCX	ENSG00000115486	ENST00000428479	-0.1094	46	-	CHOL
ENSG00000248367	ENST00000504573	EHBP1	ENSG00000115504	ENST00000405015	-0.1317	65	-	CHOL,KICH
ENSG00000248367	ENST00000504573	EHBP1	ENSG00000115504	ENST00000431489	-0.1258	1	-	CHOL,KICH
ENSG00000248367	ENST00000504573	EHBP1	ENSG00000115504	ENST00000263991	-0.1258	1	-	CHOL,KICH
ENSG00000248367	ENST00000504573	SCP2	ENSG00000116171	ENST00000528311	-0.1034	172	-	CHOL,READ
ENSG00000248367	ENST00000504573	ACADM	ENSG00000117054	ENST00000420607	-0.4685	158	-	CHOL,KIRC,KICH,KIRP,READ
ENSG00000248367	ENST00000504573	ACADM	ENSG00000117054	ENST00000528016	-0.1166	1	-	CHOL,KIRC,KICH,KIRP,READ
ENSG00000248367	ENST00000504573	ABCD3	ENSG00000117528	ENST00000315713	-0.1325	1	-	CHOL,KIRC,READ
ENSG00000248367	ENST00000504573	C16orf70	ENSG00000125149	ENST00000569277	-0.1211	19	-	CHOL
ENSG00000248367	ENST00000504573	RDX	ENSG00000137710	ENST00000534683	-0.1170	118	-	CHOL,READ
ENSG00000248367	ENST00000504573	TMBIM6	ENSG00000139644	ENST00000552635	-0.1067	30	-	CHOL
ENSG00000248367	ENST00000504573	TMBIM6	ENSG00000139644	ENST00000552370	-0.2937	195	-	CHOL
ENSG00000248367	ENST00000504573	GNE	ENSG00000159921	ENST00000396594	-0.1173	1	-	CHOL,READ
ENSG00000248367	ENST00000504573	CLPX	ENSG00000166855	ENST00000300107	-0.1015	1	-	CHOL
ENSG00000248367	ENST00000504573	BTD	ENSG00000169814	ENST00000449107	-0.1888	23	-	CHOL
ENSG00000248367	ENST00000504573	BTD	ENSG00000169814	ENST00000437172	-0.1141	46	-	CHOL
ENSG00000248367	ENST00000504573	GOLIM4	ENSG00000173905	ENST00000309027	-0.3162	170	GBM	CHOL
ENSG00000248367	ENST00000504573	SMARCA2	ENSG00000080503	ENST00000382186	-0.7060	7	-	CHOL,KIRP
ENSG00000248367	ENST00000504573	BRPF3	ENSG00000096070	ENST00000449261	-0.1244	1	-	KIRP
ENSG00000248367	ENST00000504573	BRPF3	ENSG00000096070	ENST00000532330	-0.1088	1	-	KIRP
ENSG00000248367	ENST00000504573	BRPF3	ENSG00000096070	ENST00000534400	-0.1104	1	-	KIRP
ENSG00000248367	ENST00000504573	BRPF3	ENSG00000096070	ENST00000441123	-0.1059	1	-	KIRP
ENSG00000248367	ENST00000504573	BRPF3	ENSG00000096070	ENST00000441730	-0.1136	1	-	KIRP
ENSG00000248367	ENST00000504573	USP46	ENSG00000109189	ENST00000508499	-0.2720	303	-	KIRC,KIRP
ENSG00000248367	ENST00000504573	USP46	ENSG00000109189	ENST00000512656	-0.3167	1	-	KIRC,KIRP
ENSG00000248367	ENST00000504573	CNIH1	ENSG00000100528	ENST00000556113	-0.1012	267	-	CHOL
ENSG00000248367	ENST00000504573	SDCBP	ENSG00000137575	ENST00000447267	-0.9383	114	GBM	-
ENSG00000248367	ENST00000504573	TWF1	ENSG00000151239	ENST00000548315	-0.1011	87	GBM	-
ENSG00000248367	ENST00000504573	CCNYL1	ENSG00000163249	ENST00000420321	-0.1037	1	-	KICH,READ
ENSG00000248367	ENST00000504573	PLS1	ENSG00000120756	ENST00000497002	-0.1433	145	-	KICH,READ
ENSG00000248367	ENST00000504573	ITGB1	ENSG00000150093	ENST00000396033	-0.1170	1	GBM	KICH
ENSG00000248367	ENST00000504573	ITGB1	ENSG00000150093	ENST00000302278	-0.1170	1	GBM	KICH
ENSG00000248367	ENST00000504573	NPTN	ENSG00000156642	ENST00000562924	-0.1171	1	-	READ
ENSG00000248367	ENST00000504573	PINK1	ENSG00000158828	ENST00000321556	-0.1054	1	-	CHOL,KIRP,READ
ENSG00000248367	ENST00000504573	PDLIM5	ENSG00000163110	ENST00000512274	-0.1036	252	GBM	CHOL
ENSG00000248367	ENST00000504573	PDLIM5	ENSG00000163110	ENST00000509357	-0.1006	1	GBM	CHOL
ENSG00000248367	ENST00000504573	PDLIM5	ENSG00000163110	ENST00000513341	-0.1139	1	GBM	CHOL
ENSG00000248367	ENST00000504573	PDLIM5	ENSG00000163110	ENST00000506632	-0.1252	1	GBM	CHOL
ENSG00000248367	ENST00000504573	NDUFS1	ENSG00000023228	ENST00000449699	-0.3571	154	-	CHOL,KIRC
ENSG00000248367	ENST00000504573	NDUFS1	ENSG00000023228	ENST00000432169	-0.3571	154	-	CHOL,KIRC
ENSG00000248367	ENST00000504573	NDUFS1	ENSG00000023228	ENST00000456284	-0.1652	1	-	CHOL,KIRC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000248367	CTB-129O4.1,hsa-mir-22,WDR33	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,DPH7	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,UCKL1	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,RXRB	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,C1orf35	CHOL,LGG,UCS,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,USP21	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,FUZ	CHOL,UCS,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,PRR14	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,RING1	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,ILKAP	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,KIAA0895L	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,FAM117B	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,PAM16	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,BOLA1	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,KAT2A	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,NCAPH2	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,ERCC3	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,PHC1	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,EXD3	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,RAD52	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,HEXIM2	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,PIDD1	CHOL,UCS,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,PAGR1	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,ING5	CHOL,LGG,UCS,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,CEP131	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,CLK2	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,LUC7L2	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,E4F1	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,GOLGA8B	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,PLA2G6	CHOL,LGG,UCS,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,TSEN54	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,HOOK2	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,NVL	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,PPP1R26	CHOL,UCS,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,MRPL38	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,RBMX	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,FBXO46	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,MSL2	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,CCDC57	CHOL,UCS,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,GIGYF1	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,CXXC1	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,COPS7B	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,C14orf93	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,POLL	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,RBM14	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,PCIF1	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,ENDOV	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,BRD8	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,AARSD1	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,WASH9P	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,SRRT	CHOL,UCS,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,PMF1	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,LRRC14	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,MTA1	CHOL,LGG,UCS,PAAD,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,WBP1	CHOL,LGG,PAAD,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,ILF3	CHOL,LGG,UCS,SARC,KIRP
ENSG00000248367	CTB-129O4.1,hsa-mir-22,INO80E	CHOL,LGG,PAAD,SARC,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000248367.1	ENST00000504573.1	147	12	455

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential