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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000248275

Summary for TRIM52-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000248275

Gene symbol

TRIM52-AS1

Gene nameTRIM52 antisense RNA 1 (head to head)
HGNC

49006

Entrez ID

100507602

Gene typeprocessed_transcript
SynonymsTRIM52-AS1|05q35.3
UniProtAcc

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Structure and expression level for TRIM52-AS1

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002482753.437683e+02-1.643442e+004.743110e-01-3.464905e+005.304200e-044.766298e-03DOWNCESC
ENSG000002482753.436299e+02-1.011350e+006.885494e-02-1.468812e+017.680000e-491.570000e-47DOWNBRCA

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002482755.314291e-011.724353e-04CHOL4.546021e-04
ENSG00000248275-4.545434e-017.655146e-06KICH1.658615e-05
ENSG000002482753.128588e-011.564688e-10LIHC5.638973e-10

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lncRNA-Protein interaction for TRIM52-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000166313APBB163.2692.3638O00213EpiPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000204227RING125.1391.9208Q06587EpiChIP-seq
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000149929HIRIP317.3695.3467Q9BW71EpiPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000066136NFYC14.9293.3355Q13952TF,EpiChIP-seq
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000115241PPM1G13.696.8887O15355EpiPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000132275RRP88.1391.9382O43159EpiNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000073584SMARCE12.4193.3274Q969G3EpiPredict
ENSG00000248275ENST00000509252TRIM52-AS1ENSG00000204371EHMT227.1191.7405Q96KQ7EpiPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000204371EHMT2114.5296.6308Q96KQ7EpiPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000154832CXXC159.6294.0996Q9P0U4TF,EpiPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000130726TRIM2858.9792.9033Q13263EpiPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000105619TFPT18.3493.9519P0C1Z6EpiNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000006712PAF17.9593.7081Q8N7H5EpiNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000112511PHF13.6391.5338O43189TF,EpiNA
ENSG00000248275ENST00000509252TRIM52-AS1ENSG00000149929HIRIP318.6791.862Q9BW71EpiPredict
ENSG00000248275ENST00000509252TRIM52-AS1ENSG00000115241PPM1G16.1990.7089O15355EpiPredict

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000167967E4F199.9194.2154Q66K89TFNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000154832CXXC159.6293.7474Q9P0U4TF,EpiPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000065029ZNF7630.394.068P36508TFPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000166526ZNF326.0493.5622P17036TFNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000136630HLX16.7696.4217Q14774TFNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000066136NFYC14.9292.9332Q13952TF,EpiChIP-seq
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000170515PA2G412.4393.405Q9UQ80TF,RBPPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000197951ZNF7112.2591.7804Q9NQZ8TFNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000196378ZNF3410.9395.4258Q8IZ26TFPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000125817CENPB10.6991.7402P07199TFPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000112511PHF13.6391.4462O43189TF,EpiNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000140319SRP1464.7191.394P37108RBPNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000265241RBM8A55.1191.3427Q9Y5S9RBPPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000084072PPIE50.8391.4787Q9UNP9RBPNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000160917CPSF439.6392.2694O95639RBPPAR-CLIP
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000099622CIRBP31.0692.3942Q14011RBPNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000134597RBMX222.8294.3974Q9Y388RBPNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000150316CWC1521.8391.1497Q9P013RBPNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000170515PA2G412.4392.535Q9UQ80TF,RBPPredict
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000139168ZCRB112.3192.9015Q8TBF4RBPPredict
ENSG00000248275ENST00000514146TRIM52-AS1ENSG00000204356NELFE12.1291.8376P18615RBPNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000125970RALY9.5593.699Q9UKM9RBPNA
ENSG00000248275ENST00000507434TRIM52-AS1ENSG00000130811EIF3G5.9191.8692O75821RBPPAR-CLIP

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lncRNA-DNA interaction for TRIM52-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
GSTM3,MAD2L2,MCRS1,ABHD17A,IFT22,CIRBP,NUDT18,RNF166,DAPK3,C1orf56,SRP19,KLF2,CACFD1,TMUB1,PPP2R3B,MDH2,LRRC61,PDK4,RCE1,METTL5,SNRPA,DTYMK,SF3A3,COMMD7,DOK1,VRK3,NDUFB2,TAF9,SDF2,COX19,VKORC1,MPLKIP,SSU72,C3orf18,BTF3,MRPS11,MON1A,CDKN2AIPNL,CFAP298,INO80E,RBM42,CFL1,CSNK2B,MEA1,COPZ2,RPL35,PPP1R14A,MIIP,LPAR2,RPP38,C18orf21,C22orf39,COQ6,C12orf73,SSBP2,MRPS2,TOE1,CDKN2C,FBXW9,HMGN3,CCDC167,YIPF3,NDUFB1,RABL6,PDRG1,ARHGAP33,ELOF1,HEXD,PRELID1,IDH3B,FAM204A,PTRHD1,CDK5,MCRIP1,ABHD8,MRPL52,PRADC1,TEDC2,PES1,NMRAL1,COX6B1,JMJD6,CRIP2,C1orf159,NDUFS8,DDX56,FAM98C,IP6K2,THOC3,SWI5,YIF1A,RPL23,PHB2,INO80C,GUK1,C20orf96,HSCB,ARFGAP1,UCHL3,RPL13A,LSM3,NUBP2,STYXL1,RPA2,PIDD1,JTB,AP5Z1,PCED1A,MVB12A,FAM131C,POLRMT,MPND,SCAMP3,SLC35C2,REXO4,NXT1,PSME1,TRPT1,DNAJC18,MRPS18B,TMEM199,DMAC1,DHRSX,SPC24,PARVG,PRMT1,CUEDC2,SCAND1,COX14,BMERB1,PPCDC,RALY,FAM107A,ATP5IF1,VPS72,DUT,NDUFS6,AP2S1,EIF3D,NUDC,RASSF1,MYPOP,NFKBIB,UIMC1,SRI,SMARCE1,TMSB15A,GFER,TIMM9,MIEN1,UQCRH,TP53I13,PMF1-BGLAP,SNU13,SNRPD3,NDUFB5,UQCRC1,RPL36AL,PPP1R7,CYBC1,COPE,MRPL11,BAD,COX7B,CCDC22,TMEM258,PFDN1,CIB2,PHF1,ABHD11,HDAC10,ATRAID,NOXA1,UCK1,MARCKSL1,RAD51C,LAMTOR1,NUP88,SAC3D1,COX7A2L,MFNG,POLR1C,MZT2A,PSMG4,SAAL1,SFXN4,IFI27L1,BRAT1,PSMG3,NOL7,UQCR10,SAYSD1,WDR46,VOPP1,MYG1,DTX3,ZMYND19,E2F1,RNF215,TLE5,NAT9,ABHD14A,LUC7L,LSM2,TWF2,ATP5PF,MRPL43,TOMM7,CYTH2,B9D2,EIF3I,NOP53,NDUFB10,PRDX5,C15orf61,TATDN3,TXN2,HDDC3,GPANK1,SERGEF,RCC1L,NDUFAB1,HRAS,HSBP1,CHCHD7,COQ8A,REEP2,MYL9,TTC1,CD52,MUTYH,CD81,ASMTL,SRM,RPL27,CINP,B4GAT1,PMF1,ZC3HC1,LRRC75B,SENP3,CFAP410,AHCY,SERPINB6,STOML2,SURF6,RNASEH2B,UBL5,RPS8,RPS11,ARMC6,NECAP2,PRAF2,TEDC1,FAM216A,STK19,HTRA2,WASHC1,DEDD2,KLC1,GPS2,NOL12,NSA2,LYRM1,MOB2,SPATA2L,EIF3H,COMMD6,SPATA33,EMC9,MACROD1,CARD19,BLMH,DUSP28,CLIP3,BOLA1,VPS16,PLEKHO1,BCDIN3D,TOMM5,RXRB,PMPCA,SPSB2,TFPT,SH3GLB2,ZNRD2,TPM2,MRPL38,EMC8,ARL16,UXT,SLIRP,TUBGCP2,CTF1,POLD2,PET100,SART1,CMC2,DYNC2I2,HINT2,LMBR1L,B3GAT3,PIGP,NDUFA11,SMUG1,WDR54,APTX,LIMS2,OSER1,SURF2,EIF3G,INPP5K,IK,MICOS13,SUGP1,NAA80,NABP2,UQCR11,USE1,TMEM208,CYSTM1,ERAL1,WDR70,LYRM4,PRCC,PSENEN,MAD1L1,ITGB3BP,GABPB1,RAB3IL1,ANKRD39,MPST,RPAIN,ACYP1,CTU2,PSMA5,GAR1,TSSC4,DDX49,PFDN6,C3orf62,YJU2,ALKBH2,TMEM160,PARL,ACTR1A,ESS2,DYNLT1,C1orf52,PAFAH1B3,C2orf76,PFDN5,LRTOMT,DUS3L,CENPH,ARFGAP2,SPCS1,HDDC2,SDHAF2,TUFM,RPL23A,PMVK,CCDC24,SKP1,EAPP,ALKBH3,KIF12,THOC7,COX7A2,PCYT2,RSL24D1,IQCC,MMAB,TRMO,MED16,DNALI1,MRPL55,EMG1,MED7,NDUFB11,IFTAP,UCP2,C19orf53,TMEM18,EIF2B4,MRPL28,SURF1,DNAJC8,LCMT1,ACBD6,FIS1,POPDC2,CTDNEP1,GTPBP6,DDX54,TRAPPC4,TMEM251,CCDC106,HMGB1,MED27,NELFE,METTL23,EXD3,GLT8D1,NFKBID,C17orf75,MAF1,STX8,EVA1B,ELP5,EHMT2,DTX1,CHMP2A,HLX,PPP1R3F,ST3GAL3,DNAJC19,ZNF48,CCHCR1,PRMT7,POLR2L,QARS1,VPS4A,RNF220,HEMK1,SMIM12,IFT20,FRS3,FBXL8,SLC41A3,KRTCAP2,TRIM28,POP5,PPM1G,GDI1,UBXN6,METTL26,UCKL1,FKBP3,CIAPIN1,PTCD1,FARS2,PDCD2L,TRIOBP,SNRNP40,SRA1,ENKD1,BLOC1S1,STMN1,ZBTB8OS,CCDC107,MRPL34,ARF5,NDUFV1,TFEB,NAT14,HES6,CDK5RAP1,MARCHF9,NPRL2,CCDC85B,VAMP8,HDAC11,SLC66A1,BCAT2,WDR45,DHRS12,STX10,ST6GALNAC6,SAP18,VAMP5,ENDOV,FAM207A,FAM162A,ELP6,TRAPPC9,ERMARD,MYL6,MAD2L1BP,EGFL7,ZNF22,SNX21,HIRA,HEXIM2,TGIF2,CHADL,TCF19,SEC61G,VMAC,TAF10,RNF25,DBNL,COX4I1,BCL2L12,NFKBIL1,ECSIT,DYRK4,CENPS,PELP1,MYL6B,C19orf25,IPO4,CWF19L1,TRMT61A,COA5,SSBP1,EIF1B,ATP5F1D,DPH5,HEBP2,SMIM19,FKBP2,SDSL,BOLA3,MRPS26,C16orf86,ZSWIM7,SLC25A11,RP11-523H20.5,RPS26,NDUFAF6,ATAD3B,OSCP1,BANF1,TMEM9,PDLIM2,HAX1,PHKG2,NARF,HACL1,TIMM10,BUD31,POLR2J,TBC1D17,PTPMT1,ARL3,ERCC2,POLR2I,CENPT,MRTO4,IMMP2L,NUDT2,LSM4,SNRPB,MRPS31,CCDC102A,C21orf58,C12orf43,AAAS,ATP6V1F,CXXC1,ZNF71,PSMA4,PARD6A,STX5,MRPS33,TBC1D7,SDR39U1,PDAP1,NDUFC1,MTFR1L,SPIN2B,CRYZL1,ARMC7,SUPT3H,OAZ1,TIMM29,PAM16,SPATA24,CPSF3,PSMC5,SMIM4,GALK1,MDP1,MAPK3,USP20,MRPL54,TCEA2,THAP4,PRPSAP2,KRT10,TMEM234,PSMB7,ATP5MG,WDR83OS,CTU1,ACD,XAB2,CENPB,PNKD,NPEPL1,TMEM203,PPIL3,FAAP20,COA3,EIF2B5,PMM1,NDUFA3,RAB34,RRP36,PAF1,SVBP,TAZ,C19orf44,RNF167,DAXX,GLRX5,CYB5D2,CCNB1IP1,RAB4B,TARBP2,CISD3,RING1,CHKB,CEP89,TRIM11,ABHD14B,OSGEP,RPS6KB2,DHPS,BABAM1,PIH1D1,CCDC28A,RBM22,NDUFA2,BORCS6,ATP5PD,FDX2,CYBA,DDX51,PSMB3,FAM229B,ZNF593,ATG4B,CENPM,KIF9,CCS,YIF1B,CCDC159,ACOT8,COA6,IFT122,EEFSEC,ITGB1BP1,DVL2,ANAPC11,TOR2A,GABARAP,RRP7A,CCDC12,ILVBL,BUD13,ERCC5,CYB561D2,OARD1,DNAJC4,CIZ1,CCDC28B,PPP1R12C,PRR3,NICN1,PPOX,BOP1,AK1,PSMB2,MRPL20,COX16,ADPRM,HPF1,APBB1,FAM136A,HMGN2,BRI3,GMDS,IMP4,MRPL24,SPACA9,PCBP2,MRM1,EEF1B2,SMPD2,UBL7,PSMC3,NME4,MEPCE,TBCA,CWC15,NFYC,CPSF4,NAA10,FBXO44,ATP5F1C,TMEM120A,NHP2,TUSC2,SH3GL1,PGP,PRR7,THOC6,UBOX5,COA1,GALT,DENND6B,ZFYVE19,TOMM22,IFI27L2,IL11RA,SGF29,NEK8,NAP1L1,MBD3,SERF2,RPS10,SUMO2,MRPL36,PSPN,DAD1,MRPS9,ALKBH4,CDC37,NDUFAF5,FRG1,KHDC1,SYF2,NTHL1,UBE2L3,STK32C,HSPBP1,TUBB,CCDC71,NAIF1,NDUFAF2,B9D1,DTNBP1,ISOC2,R3HDM4,NCAPH2,TMEM187,SPAG7,NOSIP,IDH3G,TAF11,MORN2,NUDT1,TRMU,WDR25,PSMA2,SEM1,STMP1,PHF19,VPS51,MYL12B,DNPH1,C1orf35,LSM10,ZCWPW1,MRPL2,KLHDC4,EIPR1,SNX17,LSM5,RFNG,H2AJ,SEC61B,COPS9,ZMAT5,FIBP,ALG14,TMEM86B,RNPS1,PDCD2,SLC27A3,DPY30,FAM50A,ITPA,MAP2K2,SF3B6,RAMP2,SH3BGR,ALKBH7,MRPL22,KLHDC8B,MIB2,DEAF1,KLC4,SCRN2,GMFG,ANKS3,DDA1,SMDT1,OGG1,RPS6,CNIH2,MCRIP2,TRAPPC3,FAM234A,ERCC1,PSMB1,CPNE1,NTAQ1,NUDCD2,NKIRAS2,PPAN,C14orf93,DPH7,NSMCE4A,CKLF,UBE2M,FUNDC2,POLR3F,XPA,YPEL5,WDR74,SSR2,NUDT16L1,TMEM115,NDUFA13,SNRPD2,EIF6,EIF3F,ERH,NAGLU,HSD17B8,NDUFA4,BCL7C,FRA10AC1,IFT27,ZNHIT1,SARS2,SWSAP1,NT5C3B,UBE2D4,GRK6,PA2G4,DTNB,LMF2,NUDT14,DCTN2,C20orf27,GET3,ING4,RRP8,UBXN1,GNG2,PEX16,IFT46,WDR61,RBM10,TRIM52,COA8,PCBP4,MOSPD3,ATOX1,COASY,EEF1D,RPS24,NDUFB6,LMAN2,TPRKB,NEDD8,NACA,TSR3,YPEL3,SAP30BP,NSMCE1,PIN1,THOC5,ADRA2C,GNL1,RNF5,REX1BD,HSD11B1L,FASTK,ECH1,DXO,NR1H2,CCDC57,FAM174C,HINT1,FKBP8,TSPYL2,ARFIP2,TXNL1,C12orf57,IFT52,DPM2,QPCTL,HMCES,GCHFR,RPS27A,DPP7,MRPL46,TRAPPC12,RPL26L1,STK16,HIRIP3,CCNQ,C6orf136,TPRN,EBNA1BP2,PPIH,SLC66A2,MAPK8IP1,FAM104B,GTF2H5,SNX11,BNIP1,POLDIP2,ILKAP,LYPLAL1,ENSA,UROD,TMEM39B,GTF2F1,SNHG32,CBY1,WDR83,USF1,COPS3,DERL2,B3GALT6,HDAC3,ATP5MK,ILF2,NOC4L,TMEM101,CLPP,PIGZ,MTLN,FBXW4,TSEN54,MRPL57,FAM193B,PNKP,SLC25A28,CZIB,TSPAN4,HDAC5,RPA3,SPATC1L,EIF3K,POLM,DECR2,CLTB,MECR,RABEPK,POC1A,TRIR,HCST,JMJD4,SCNM1,RTRAF,NDUFB3,FCGRT,GLI4,PDE9A,NDUFB8,SSR4,TECR,ATP6V0B,MIX23,PFDN2,SMARCB1,ACYP2,RPL37A,C8orf58,NUTF2,C11orf68,C6orf52,GPN2,INTS11,COMMD9,P2RY11,MAN1B1,EFEMP2,BAP1,CHCHD2,NAA38,ABHD12,MRPS24,TCTA,TPT1,CCDC137,EMD,ICAM2,RMND5B,PPP2R5B,ABTB1,TBCB,SYCE1L,BRMS1,YIPF1,PGBD1,LENG1,TMEM186,TADA2A,PEX11G,TLE2,ZSWIM1,COMMD1,FIZ1,TATDN2,POMGNT2,CD2BP2,TMEM218,PTOV1,NMT2,C2orf68,TMEM134,SREK1IP1,ANXA6,TMEM91,UBAC1,DENND2A,PPP1R14B,TCF25,RBM8A,SMYD3,UBXN11,PHF5A,DDX41,SSBP3,RSAD1,AKR7A2,RP9,JOSD2,MVD,RFC2,ATAT1,PEF1,CLEC3B,MSRA,POMT1,CDPF1,MRPL47,POMGNT1,UBE2J2,TIMM13,MTIF3,C7orf26,LYPLA2,COQ3,UQCRB,USP11,COQ4,INTS1,CNRIP1,ECI1,ACBD4,LRRC23,TMEM223,COMTD1,RHPN1,POLR3H,PPIE,CHMP1A,ZNF34,FAM117A,GEMIN7,PSMB8,C9orf116,MZT2B,CETN2,NDUFA10,GON7,PIGQ,ANKRD54,CHID1,RASSF7,TMEM60,YAE1,NSMCE2,MESP1,B3GALT4,SPOP,ARFRP1,ZNF3,CIAO2B,ABCD4,AAMDC,MRPL27,ARPC4,KPTN,SUV39H1,EEF1A1,TPGS1,MICOS10,ECSCR,SUCLG1,RNF126,RPS13,CEP131,DUS1L,SH2D3C,GPS1,RUVBL2,NRIP2,CNTROB,IRF2BP1,IMMP1L,HSD17B10,RPS17,TPRA1,NELFB,CFDP1,RPS29,PCSK1N,IRF3,IMP3,CHCHD5,C7orf50,NRF1,C1orf122,DCTN3,TGFB1I1,GADD45GIP1,COQ5,SNF8,MIF4GD,DDX39A,LIN37,EMC3,PPP1R16A,SS18L2,RFXANK,FAM89B,MED31,EMP3,UROS,VAMP2,ANAPC7,DBP,C1orf50,SH2B2,DNAJB2,PSMA7,ANAPC2,BEND5,UFD1,COX17,OGFOD3,SAMD1,RABAC1,TXNDC17,TTLL1,PPP2R3C,GPATCH3,NDUFB7,NSUN5,THYN1,PGLS,ETFB,GTF2A2,FAF1,C12orf76,FAM228B,CDC26,RPL36A,THAP3,CLASRP,HMGN1,TTC32,STMN3,TMA7,ITGAE,YBEY,FLOT1,POMZP3,SOX12,POLR2E,KLHDC3,RPS19BP1,THAP8,TMEM11,PARP6,TUBA1A,TMEM238,DGCR6L,CHMP4B,MRPS14,SIRT6,TMEM54,HSPB11,SNRPB2
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.
Only predicted by TDF
DPH7,DTNBP1,APITD1,PDCD2L,CENPB,ATP6V1F,NUDC,PEX11G,PSMB3,JMJD6,COX16,CCDC167,PFDN1,PGLS,VRK3,PQBP1,TNFSF12,CUEDC2,MED16,HEMK1,GPATCH3,MAPK3,SH3GLB2,EIF3G,DGCR14,CENPM,FKBPL,STMN3,PIH1D1,MZT2B,TATDN2,COX6A1,ALKBH4,OSCP1,TUSC2,CAMLG,IDNK,RNF167,MIIP,PRDX5,VMAC,HINT2,VAMP2,C3orf62,ZSWIM1,TWF2,EIF3F,NDUFB5,POLR3H,MYL5,TIMM22,CPNE1,MANBAL,NDUFB11,TBKBP1,PPCDC,NT5M,NT5C,FAM234A,MACROD1,RPA2,RPL35,PKIG,POLR2J,PTCD1,HCFC1R1,MAP2K2,TMEM18,SLC25A11,GADD45GIP1,CAPNS1,C16orf91,NELFE,ATP5I,COX4I2,ZFAND2A,FKBP8,TAZ,PMVK,NDUFA2,C22orf39,ITGB3BP,ECSCR,KIZ,VPS72,COMTD1,DHPS,RABL6,CLPP,PFDN4,GCHFR,TMEM91,NDUFS4,C3orf18,RPS26,MRPL52,UBXN1,GNB2,SNTA1,TMEM9,NOSIP,E4F1,KLHDC4,UBXN6,AIP,DYRK4,COA1,RBM10,CEP131,TATDN3,C8orf58,NDUFB1,ZCWPW1,NANS,SRP14,CLASRP,SDR39U1,PSMD4,EMC8,CDC34,LSM2,UBALD2,MRPL36,QTRT1,C17orf75,SRI,PCSK1N,C6orf52,PSMA5,ABHD12,NENF,RBM42,ZSWIM7,INO80C,C2orf68,CLTB,GPN2,ADRM1,B3GALT4,SAT2,RAC1,OGFOD3,HIST3H2A,IFI27L1,THOC6,SCNM1,ATPIF1,CYTH2,COMMD3,ING5,ZDHHC4,WDR13,BABAM1,MZT2A,SGF29,ZMYND19,ZNF71,TRIM11,DHRSX,NMRAL1,MRPL4,SIRT4,RPS23,THOP1,C20orf196,MEPCE,RPL41,CHRAC1,ENDOG,ECSIT,EID2B,GPX4,TOMM5,PARK7,ARRDC1,TRMU,ILVBL,MRPS31,PSMB4,VAMP5,ALG14,TMEM14B,C19orf44,PPP2R1A,NSMCE1,SNRPC,EVL,TLE2,ATRAID,POLR2L,ITPA,CEP89,PRR7,SLC25A6,SHFM1,TIMM17B,THAP3,FBXW9,LUC7L,LAMTOR4,COQ3,ICAM2,OCEL1,BANF1,MCM7,SAYSD1,TMSB15A,PTDSS2,UBXN11,B9D2,TSEN54,HSCB,RNF126,SURF1,GGA1,C14orf142,CCDC130,ECI1,TSSC1,ABCD4,FAM195B,ABHD14B,TRIOBP,TRAPPC4,POMT1,CD52,INTS1,ARIH2OS,PPP1R12C,ALKBH2,RBP7,NUDT1,RPS27,UBA52,ANKRD39,SGSM3,CNPY3,SH3GL1,GABPB1,REEP2,VPS4A,POLRMT,TMEM238,GUK1,ABHD11,CNPY4,FAM204A,ZNF3,PHB2,GTF2A2,OXLD1,LPAR2,CFAP36,ELOF1,LSM10,C1orf56,TSPAN4,NICN1,BCAT2,PSMB1,C9orf114,ING4,IL3RA,C2orf81,COQ6,C7orf50,UCP2,EIF3D,BEND5,TPRA1,NFU1,B4GALT7,TMEM160,DNAJC4,MRPS2,MRPL24,UQCR11,C14orf79,EHMT2,DNAJC18,AURKAIP1,INPP5K,TRMO,RNASEH2B,RPSA,NDUFA3,PRR14,PSMA2,YIF1B,CCDC137,NME4,CMTM7,KPTN,NDUFS5,NDUFS6,RAB3IL1,ZNF48,RRP7A,FAM229B,ST6GALNAC6,PSMF1,PHF19,HIRA,DERL2,C9orf116,MRPL47,TRMT112,USMG5,RABEPK,ADSL,CIRBP,MRPS36
Exist in public source
NA

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for TRIM52-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
DIP2B,B4GALT5,MYO6,SNX33,UTP20,PTPRK,UHMK1,TCF20,QSER1,LRBA,POLR1B,TRIM14,TRIP11,KIAA1109,RNF213,EDEM1,ITPR2,EIF4G1,SMG1,VPS13B,ZFYVE26,SACM1L,CSNK1G1,TDG,PRRC2C,ATP11B,PDPK1,ARFIP1,PAK2,CPEB4,LONP2,TMEM127,STRN,GOLIM4,TMEM33,PTPRE,KIDINS220,NOCT,PARP9,AP4E1,KCTD5,BTBD10,PCDH1,DDX6,LPGAT1,SEC23A,MINK1,MKLN1,MFSD9,ITSN2,CLEC16A,SLTM,RAB35,ABHD2,CLPX,AGFG1,APOL6,RHBDF1,VPS35,ATR,CAND1,OSBPL8,SLC9A1,LDLR,MICAL2,UBAP2L,RLIM,KDM2A,ACTR2,FBXW2,ANKRD52,GPATCH8,CHERP,UBA6,ABL2,TUT7,ATP8B1,MET,TGOLN2,EIF4G2,CD46,PLEKHA7,CDK13,PARP4,NAA50,CAB39,HUWE1,NPAS2,CALU,MBOAT1,ERAP1,GOLGB1,BACH1,SMARCA5,CPD,ARFGEF1,FNDC3B,ARCN1,ARHGAP32,UBFD1,NOMO2,TMEM87B,PHF6,RIF1,PNPO,CNNM4,ADCY7,SH2B3,SUSD6,VPS4B,UHRF1BP1L,PMM2,TRAPPC11,NAA25,USF3,KHNYN,LARP1,NPEPPS,ITGB1,HECTD1,ST3GAL1,SPTY2D1,NLN,SLAIN2,PDXDC1,ARIH1,PUM1,CHORDC1,TJP2,SEC24B,SLC22A23,LIMK2,KCTD10,CPOX,SEC24A,FAM91A1,MCU,KMT2D,TRAPPC8,BCL2L13,ANAPC1,AP3D1,RNF111,TP53BP1,TUBGCP4,USP32,ZDHHC5,GIGYF2,NCBP1,CLPB,RPS6KA3,TRPM7,POLR1A,UBE3C,C9orf64,LUZP1,DDX3X,ASXL2,USP47,NAA15,BAZ2A,CEP350,LMBR1,PIKFYVE,RAB3GAP2,MYOF,CHD7,GAPVD1,GNPTAB,DNAJC13,C16orf70,MED13,FAM83H,GSPT1,XRN1,CEMIP2,NUP98,CFH,TRIP12,PDCD6IP,ME2,KIAA1671,NPC1,MYO18A,SOS1,CSNK1A1,SETD7,AKAP13,VDR,CDCP1,UGGT1,VRK2,CPSF6,AMBRA1,XPOT,THOC2,CELF1,CCNK,NEMF,OAS3,SCAF11,CDH1,PGM2,CNOT1,NF1,CAMSAP2,SLC35E1,CBL,LPIN2,CNTNAP1,MYH9,TET2,SERINC5,SH3PXD2A,LNX2,NIBAN2,ATXN1L,FAM83B,STX17,PCDHGC3,NOP9,PIP4K2C,MTAP,HPS3,ADAM10,KIAA0100,ARHGAP21,UBE4A,DSG2,MAP3K2,KIF16B,ITPRIPL2,UNC5B,SMC4,PDHX,ATF7,GFPT1,MACF1,LIMA1,RIC1,NUMB,SPRED2,RAPGEF2,MCCC2,PLEKHM1,MR1,HAUS6,ATF7IP,SEC24D,IREB2,SEPTIN11,TMF1,CLIP1,POP1,PKP3,CORO1C,IQGAP2,GRHL1,NCOA2,UBE3B,PRKDC,GFM1,XPO1,PRR14L,RNF169,ALDH3B1,METAP1,TBC1D2B,RAB11FIP1,ESRP2,URB1,LARP4,USP9X,UEVLD,NOTCH3,TGFBRAP1,RREB1,SEC23IP,UHRF1BP1,MYO1E,SSH1,KLHL5,SLC31A1,SP1,KMT2A,GOLGA2,MTF1,ZYG11B,AQR,HYOU1,USP7,KIF2A,REST,TMOD3,PCYT1A,RANBP2,ACTN4,VCPIP1,PPP2R1B,DPY19L1,AVL9,ABCE1,PICALM,AGO2,CASP3,IPO7,CPSF2,CTTN,STX6,SPG11,SMC6,INPP4A,VPS13C,ZNFX1,SELENOI,DHX36,BAZ1A,MARK2,LRRC8B,KPNB1,GSK3B,GNPNAT1,AEBP2,BOD1L1,RALGAPB,SBNO1,UBQLN1,KPNA6,QTRT2,NRBF2,PSEN1,MTR,NUP50,CLOCK,PTPN11,SCYL2,MCM3AP,TET3,PLEKHB2,POLR2A,FGD6,PALB2,SCFD2,CLTC,AP1AR,GLG1,NAA35,ATP2A2,SON,INTS2,CCND1,RAB31,M6PR,APAF1,TAF1,PCNX1,TPP1,DDI2,HSPA4L,IQGAP1,ITGAV,SLMAP,CLCN3,SNTB2,SOAT1,BPTF,ARHGAP5,INO80,LRRC58,UBN1,NUP205,COPB2,RAD23B,DNAJC21,ATP6V1A,NIPA2,SCARB2,TNFRSF10B,PDLIM5,KIF13B,DYNC1LI2,ZNF106,RASA1,NAMPT,CERT1,DNAJC3,INCENP,KNOP1,MED13L,BCL9L,IGF2R,KMT2B,SERINC3,DOCK9,TBC1D2,TBC1D23,ITGA6,GTF3C4,ECPAS,ABCA1,C16orf72,TNPO1,USP31,SPTLC1,DTX3L,CARD6,CACUL1,YES1,NCAPD3,CAPN1,PIK3C2A,HEATR5B,BIRC6,CORO2A,SEC31A,PTPN3,CYFIP1,ZNF28,ANO6,LRP1,PPFIA1,DENND5A,BCOR,BDP1,PDS5A,ITGA2,AHNAK,UBE2W,MPZL3,TRAF7,NSD1
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000248275ENST00000433265exon_skip_293641chr17:76091142-76091235-9.81-0.1382EXOC7ENST00000589210In-frame
ENSG00000248275ENST00000509252exon_skip_421737chr4:3428557-3428711-12.93-0.1319RGS12ENST00000336727,ENST00000344733Frame-shift

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000248275ENST00000433265exon_skip_14329chr1:178892229-178892307-10.25-0.2050RALGPS2ENST00000367635In-frame
ENSG00000248275ENST00000509252exon_skip_44853chr10:104010815-104010908-12.09-0.1474SLKENST00000369755In-frame
ENSG00000248275ENST00000433265exon_skip_98384chr12:124327408-124327633-23.97-0.1339NCOR2ENST00000405201In-frame
ENSG00000248275ENST00000433265exon_skip_114200chr14:73279280-73279424-18.33-0.1608NUMBENST00000355058,ENST00000555238In-frame
ENSG00000248275ENST00000433265exon_skip_131398chr15:101286213-101286293-9.00-0.2647SNRPA1ENST00000254193Frame-shift
ENSG00000248275ENST00000433265exon_skip_132355chr16:1786756-1786955-24.13-0.1237NUBP2ENST00000262302Frame-shift
ENSG00000248275ENST00000433265exon_skip_324294chr2:27774423-27774530-11.13-0.1136MRPL33ENST00000296102Frame-shift
ENSG00000248275ENST00000433265exon_skip_461111chr6:90544551-90544632-10.73-0.1916MAP3K7ENST00000369329In-frame
ENSG00000248275ENST00000433265exon_skip_481821chr8:22067084-22067159-9.19-0.1641DMTNENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266In-frame
ENSG00000248275ENST00000433265exon_skip_52701chr10:97468965-97469104-13.24-0.1237MMS19ENST00000370782,ENST00000438925Frame-shift
ENSG00000248275ENST00000433265exon_skip_152304chr17:39745912-39746000-11.80-0.1405GRB7ENST00000309156,ENST00000394209,ENST00000394211Frame-shift
ENSG00000248275ENST00000433265exon_skip_319223chr19:43526200-43526349-23.57-0.1637ETHE1ENST00000292147Frame-shift
ENSG00000248275ENST00000433265exon_skip_370518chr22:50247691-50247776-11.14-0.1591HDAC10ENST00000216271Frame-shift
ENSG00000248275ENST00000433265exon_skip_374375chr3:49675182-49675309-18.23-0.1860APEHENST00000296456Frame-shift
ENSG00000248275ENST00000433265exon_skip_494079chr8:144099080-144099205-19.33-0.3333SHARPINENST00000398712Frame-shift
ENSG00000248275ENST00000433265exon_skip_303345chr19:17227839-17228005-15.53-0.2427OCEL1ENST00000215061Frame-shift
ENSG00000248275ENST00000433265exon_skip_303809chr19:18431352-18431418-9.11-0.1752SSBP4ENST00000270061In-frame
ENSG00000248275ENST00000433265exon_skip_326741chr2:73946718-73946906-16.47-0.1408DGUOKENST00000264093Frame-shift
ENSG00000248275ENST00000433265exon_skip_516535chrX:119840645-119840684-4.57-0.2077UPF3BENST00000276201In-frame
ENSG00000248275ENST00000509252exon_skip_58206chr11:35211245-35211449-14.07-0.1005CD44ENST00000428726In-frame
ENSG00000248275ENST00000433265exon_skip_319443chr19:45165126-45165194-9.66-0.1533TRAPPC6AENST00000585934Frame-shift
ENSG00000248275ENST00000433265exon_skip_6419chr1:51756319-51756358-7.80-0.2229OSBPL9ENST00000428468In-frame
ENSG00000248275ENST00000433265exon_skip_439146chr5:154950820-154950938-11.84-0.1410MRPL22ENST00000523037Frame-shift

check buttonlncRNA targets by miRNA.
lncRNA targets by miRNA
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source
ENSG00000248275hsa-mir-22ENST00000514146chr5:181261720-181261802171.00-59.7272NA
ENSG00000248275hsa-mir-22ENST00000514146chr5:181261409-181261486165.00-76.5183NA
ENSG00000248275hsa-mir-22ENST00000514146chr5:181261220-181261295157.00-95.9482NA
ENSG00000248275hsa-mir-22ENST00000514146chr5:181261889-181261972155.00-73.0382NA
ENSG00000248275hsa-mir-22ENST00000514146chr5:181261586-181261669147.00-65.8789NA
ENSG00000248275hsa-mir-22ENST00000514146chr5:181261316-181261409141.00-74.1382NA
ENSG00000248275hsa-mir-22ENST00000507434chr5:181261316-181261399183.00-76.5378NA
ENSG00000248275hsa-mir-22ENST00000507434chr5:181261393-181261480178.00-83.9189NA
ENSG00000248275hsa-mir-22ENST00000507434chr5:181261516-181261594167.00-71.9786NA
ENSG00000248275hsa-mir-22ENST00000507434chr5:181261759-181261840156.00-64.1386NA
ENSG00000248275hsa-mir-22ENST00000507434chr5:181261223-181261295155.00-90.5780NA
ENSG00000248275hsa-mir-22ENST00000509252chr5:181261523-181261596168.00-69.8182NA
ENSG00000248275hsa-mir-22ENST00000509252chr5:181261409-181261486165.00-76.5183NA
ENSG00000248275hsa-mir-22ENST00000509252chr5:181261627-181261710155.00-73.0382NA
ENSG00000248275hsa-mir-22ENST00000509252chr5:181261225-181261295153.00-89.3463NA
ENSG00000248275hsa-mir-22ENST00000509252chr5:181261316-181261409141.00-74.1382NA
ENSG00000248275hsa-mir-22ENST00000433265chr5:181263652-181263729165.00-76.5183NA
ENSG00000248275hsa-mir-22ENST00000433265chr5:181263847-181263930155.00-73.0382NA
ENSG00000248275hsa-mir-22ENST00000433265chr5:181263744-181263816153.00-62.7777NA

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Variants for TRIM52-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation
ENSG00000248275ENSG00000105373NOP53ACC,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KIRP,LAML,LGG,LIHC,SKCM,STAD,TGCT,THCA,THYM,UVMCESC
ENSG00000248275ENSG00000110700RPS13ACC,BLCA,CESC,CHOL,DLBC,GBM,KIRP,LGG,LIHC,READ,THCA,THYM,UVMCESC
ENSG00000248275ENSG00000119185ITGB1BP1ACC,BRCA,GBM,KICH,KIRC,LIHC,TGCT,THYMBRCA
ENSG00000248275ENSG00000160408ST6GALNAC6ACC,BRCA,CHOL,KICH,LAML,PAAD,STAD,TGCTBRCA
ENSG00000248275ENSG00000175573C11orf68ACC,BLCA,CESC,CHOL,COAD,DLBC,HNSC,KIRP,LAML,LGG,LIHC,STAD,TGCT,THYM,UCEC,UCSCESC
ENSG00000248275ENSG00000196683TOMM7ACC,BLCA,CESC,CHOL,COAD,DLBC,GBM,HNSC,KIRP,LAML,LGG,LIHC,OV,PAAD,STAD,THCA,THYM,UCECCESC
ENSG00000248275ENSG00000023902PLEKHO1BLCA,CESC,CHOL,ESCA,HNSC,KICH,LGG,READ,STAD,THYMCESC
ENSG00000248275ENSG00000105270CLIP3BLCA,CESC,CHOL,KICH,PAAD,STADCESC
ENSG00000248275ENSG00000116885OSCP1BLCA,CESC,CHOL,KICH,KIRC,KIRP,PAAD,STAD,THCACESC
ENSG00000248275ENSG00000117640MTFR1LBLCA,BRCA,CESC,COAD,ESCA,GBM,HNSC,KICH,KIRC,KIRP,PAAD,READ,STAD,THCACESC
ENSG00000248275ENSG00000123349PFDN5BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,OV,PAAD,READ,STAD,THCA,THYM,UCECCESC
ENSG00000248275ENSG00000126091ST3GAL3BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRP,LIHC,PAAD,READ,STAD,TGCT,THCA,UCS,UVMCESC
ENSG00000248275ENSG00000129158SERGEFBLCA,CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LIHC,PAAD,THYMCESC
ENSG00000248275ENSG00000141295SCRN2BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,LAML,LGG,LIHC,PAAD,THCA,THYMBRCA
ENSG00000248275ENSG00000159884CCDC107BLCA,BRCA,CESC,CHOL,COAD,GBM,KIRP,LGG,LIHC,READ,STAD,TGCT,THCA,THYMCESC
ENSG00000248275ENSG00000162384CZIBBLCA,BRCA,CESC,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRP,LIHC,READ,STAD,THCA,THYM,UCEC,UVMCESC
ENSG00000248275ENSG00000166313APBB1BLCA,CESC,CHOL,DLBC,ESCA,HNSC,PAAD,STAD,THYM,UCEC,UCSCESC
ENSG00000248275ENSG00000167740CYB5D2BLCA,CESC,DLBC,HNSC,KICH,KIRC,KIRP,PAAD,THCACESC
ENSG00000248275ENSG00000170296GABARAPBLCA,CESC,CHOL,ESCA,GBM,HNSC,KICH,LGG,OV,PAAD,STADCESC
ENSG00000248275ENSG00000174684B4GAT1BLCA,CESC,ESCA,HNSC,KICH,PAAD,THCACESC
ENSG00000248275ENSG00000203778FAM229BBLCA,CESC,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,OV,PAAD,STAD,THCA,THYM,UCS,UVMCESC
ENSG00000248275ENSG00000214941ZSWIM7BLCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,THCA,THYMCESC
ENSG00000248275ENSG00000220205VAMP2BLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,KIRP,LAML,PAAD,STAD,THCACESC
ENSG00000248275ENSG00000004799PDK4BRCA,HNSC,KICH,PAAD,UVMBRCA
ENSG00000248275ENSG00000072163LIMS2BRCA,CESC,CHOL,DLBC,KICH,STAD,THYMBRCA,CESC
ENSG00000248275ENSG00000100060MFNGBRCA,CHOL,DLBC,KICH,THYMBRCA
ENSG00000248275ENSG00000101335MYL9BRCA,CHOL,HNSC,KICH,READ,STADBRCA
ENSG00000248275ENSG00000102796DHRS12BRCA,CESC,DLBC,KICH,KIRC,PAAD,THCACESC
ENSG00000248275ENSG00000108622ICAM2BRCA,CESC,CHOL,HNSC,KICH,THYMBRCA,CESC
ENSG00000248275ENSG00000119865CNRIP1BRCA,CHOL,KICH,PAAD,READ,STAD,UVMBRCA
ENSG00000248275ENSG00000123080CDKN2CBRCA,DLBC,GBM,READ,THYMBRCA
ENSG00000248275ENSG00000124104SNX21BRCA,CESC,CHOL,ESCA,TGCT,UCECCESC
ENSG00000248275ENSG00000131477RAMP2BRCA,CESC,CHOL,GBM,HNSC,KICH,LGG,PAAD,STADCESC
ENSG00000248275ENSG00000135144DTX1BRCA,CHOL,DLBC,KICH,KIRC,TGCTBRCA
ENSG00000248275ENSG00000137070IL11RABRCA,HNSC,KICH,KIRP,PAAD,READ,THCA,UVMBRCA
ENSG00000248275ENSG00000146966DENND2ABRCA,CESC,CHOL,KICH,PAAD,READBRCA,CESC
ENSG00000248275ENSG00000152465NMT2BRCA,KICH,TGCT,THYM,UVMBRCA
ENSG00000248275ENSG00000163050COQ8ABRCA,HNSC,KICH,LAML,THCABRCA
ENSG00000248275ENSG00000163815CLEC3BBRCA,CHOL,PAAD,READ,STAD,THCABRCA
ENSG00000248275ENSG00000167641PPP1R14ABRCA,CESC,HNSC,KICH,READ,STADBRCA,CESC
ENSG00000248275ENSG00000168309FAM107ABRCA,CHOL,HNSC,KICH,PAAD,STADBRCA
ENSG00000248275ENSG00000175806MSRABRCA,DLBC,HNSC,KICH,THYMBRCA
ENSG00000248275ENSG00000181513ACBD4BRCA,CESC,COAD,DLBC,HNSC,KICH,PAAD,THCA,UCECCESC
ENSG00000248275ENSG00000186469GNG2BRCA,CHOL,KICH,PAAD,THYMBRCA
ENSG00000248275ENSG00000214063TSPAN4BRCA,CESC,HNSC,KICH,THCACESC
ENSG00000248275ENSG00000249751ECSCRBRCA,CHOL,HNSC,KICH,STAD,THCABRCA
ENSG00000248275ENSG00000102897LYRM1CESC,DLBC,GBM,KICH,PAAD,THYMCESC
ENSG00000248275ENSG00000135736CCDC102ACESC,CHOL,HNSC,KICH,THCACESC
ENSG00000248275ENSG00000166780BMERB1CESC,HNSC,STAD,TGCT,UCSCESC
ENSG00000248275ENSG00000167994RAB3IL1CESC,CHOL,ESCA,HNSC,KICHCESC
ENSG00000248275ENSG00000172638EFEMP2CESC,ESCA,HNSC,KICH,STADCESC
ENSG00000248275ENSG00000172889EGFL7CESC,CHOL,HNSC,KICH,PAAD,READ,THCACESC
ENSG00000248275ENSG00000184160ADRA2CCESC,CHOL,KICH,LIHC,PAAD,TGCTCESC

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types
ENSG00000248275ENSG00000112511PHF1ENSG00000148399DPH76CHOL,HNSC,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000148399DPH77CHOL,KIRP,LGG,LIHC,PAAD,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000148399DPH75CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000175279CENPS5KICH,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000090273NUDC5CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000090273NUDC6CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000277791PSMB35CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000130313PGLS5CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000102103PQBP17CHOL,HNSC,KICH,LAML,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000102103PQBP16CHOL,KICH,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000102103PQBP16CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000239697TNFSF127BRCA,CESC,CHOL,ESCA,HNSC,KIRP,STAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000107874CUEDC25CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000114735HEMK15CHOL,DLBC,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000198746GPATCH36CHOL,KICH,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000198746GPATCH35CHOL,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000130811EIF3G6CHOL,LGG,LIHC,MESO,PRAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000130811EIF3G6CHOL,HNSC,LAML,LGG,MESO,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000100056ESS27CHOL,DLBC,KIRP,LAML,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000100056ESS26CHOL,KIRP,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000100056ESS25CHOL,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000204315FKBPL5CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000204315FKBPL5CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000104872PIH1D16CHOL,KICH,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000152082MZT2B6CHOL,KICH,LGG,LIHC,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000152082MZT2B5CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000157014TATDN25CHOL,DLBC,KIRP,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000157014TATDN26CHOL,KIRP,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000160993ALKBH45CHOL,DLBC,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000160993ALKBH46CHOL,KIRP,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000166526ZNF3ENSG00000160993ALKBH46CESC,CHOL,GBM,KIRP,LIHC,PAAD
ENSG00000248275ENSG00000196378ZNF34ENSG00000160993ALKBH45DLBC,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000196378ZNF34ENSG00000116885OSCP15KICH,KIRP,PAAD,STAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000114383TUSC25CHOL,DLBC,HNSC,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000114383TUSC25CHOL,LIHC,PAAD,TGCT,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000116691MIIP6CHOL,KICH,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000116691MIIP5CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000220205VAMP210BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KIRP,LAML,PAAD,STAD
ENSG00000248275ENSG00000196378ZNF34ENSG00000220205VAMP27CESC,CHOL,KICH,KIRP,PAAD,STAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000168612ZSWIM15CHOL,LIHC,PAAD,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000215375MYL55CHOL,HNSC,LAML,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000177370TIMM225CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000101363MANBAL5CHOL,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000147123NDUFB115CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000138621PPCDC5CHOL,HNSC,KICH,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000125458NT5C5CHOL,KIRC,LAML,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000125458NT5C6CHOL,KICH,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000125458NT5C5CHOL,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000168734PKIG7BRCA,CESC,CHOL,ESCA,PAAD,STAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000168734PKIG5CHOL,KICH,KIRP,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000005075POLR2J5CHOL,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000103145HCFC1R15CHOL,HNSC,LAML,LGG,LIHC
ENSG00000248275ENSG00000154832CXXC1ENSG00000126934MAP2K25CHOL,LGG,LIHC,TGCT,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000179271GADD45GIP15CHOL,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000204356NELFE11CESC,CHOL,HNSC,KICH,KIRC,KIRP,LAML,LIHC,PRAD,SKCM,THCA
ENSG00000248275ENSG00000125817CENPBENSG00000204356NELFE7CESC,CHOL,HNSC,LIHC,MESO,PCPG,PRAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000204356NELFE8CHOL,KICH,KIRP,LGG,LIHC,MESO,PRAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000204356NELFE7CHOL,HNSC,LAML,LGG,LIHC,MESO,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000105701FKBP87CHOL,DLBC,KICH,LAML,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000105701FKBP85CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000105701FKBP86CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000102125TAZ7CHOL,DLBC,HNSC,KIRP,LAML,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000102125TAZ5CHOL,HNSC,LAML,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000242259C22orf395CHOL,DLBC,HNSC,PAAD,STAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000242259C22orf395CHOL,KICH,LIHC,PAAD,TGCT
ENSG00000248275ENSG00000196378ZNF34ENSG00000242259C22orf396CESC,DLBC,KICH,PAAD,STAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000088970KIZ5CHOL,KICH,PAAD,TGCT,THCA
ENSG00000248275ENSG00000196378ZNF34ENSG00000088970KIZ5CHOL,DLBC,KICH,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000095059DHPS7CHOL,KIRP,LGG,LIHC,PAAD,TGCT,THCA
ENSG00000248275ENSG00000166526ZNF3ENSG00000095059DHPS5CHOL,GBM,KIRP,LIHC,PAAD
ENSG00000248275ENSG00000167967E4F1ENSG00000095059DHPS6CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000125656CLPP5CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000142046TMEM915CHOL,KICH,LAML,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000142046TMEM915CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000172590MRPL525CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000162191UBXN110BRCA,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LAML,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000162191UBXN15CHOL,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000162191UBXN15CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000142546NOSIP7CHOL,KICH,KIRP,LGG,LIHC,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000142546NOSIP5CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000167967E4F15CHOL,HNSC,LAML,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000167967E4F15CHOL,LGG,LIHC,MESO,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000104731KLHDC45CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000167671UBXN65CHOL,DLBC,HNSC,PAAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000110711AIP9CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LAML,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000110711AIP7CHOL,KICH,KIRP,LGG,LIHC,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000110711AIP6CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000125817CENPBENSG00000182872RBM105CESC,CHOL,LIHC,MESO,PCPG
ENSG00000248275ENSG00000154832CXXC1ENSG00000182872RBM106CHOL,LGG,LIHC,MESO,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000182872RBM106CHOL,LAML,LGG,LIHC,MESO,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000241852C8orf585CHOL,KICH,KIRP,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000078487ZCWPW16CHOL,DLBC,KICH,KIRP,PAAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000104859CLASRP7CHOL,KICH,KIRP,LAML,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000104859CLASRP6CHOL,KICH,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000196378ZNF34ENSG00000104859CLASRP5CHOL,DLBC,KIRP,LIHC,THCA
ENSG00000248275ENSG00000125817CENPBENSG00000204392LSM27CESC,CHOL,HNSC,LIHC,MESO,PCPG,PRAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000204392LSM27CHOL,KICH,LGG,LIHC,MESO,PRAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000204392LSM26CHOL,HNSC,LGG,LIHC,MESO,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000213339QTRT16CHOL,HNSC,KIRP,LAML,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000213339QTRT16CHOL,KIRP,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000213339QTRT16CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000117691NENF5CHOL,KICH,LGG,TGCT,THCA
ENSG00000248275ENSG00000125817CENPBENSG00000126254RBM425CHOL,LIHC,MESO,PCPG,PRAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000126254RBM427CHOL,LGG,LIHC,MESO,PRAD,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000126254RBM426CHOL,LAML,LGG,LIHC,MESO,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000214941ZSWIM75CHOL,KICH,KIRP,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000175416CLTB5CHOL,DLBC,KICH,LAML,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000142751GPN25CHOL,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000142751GPN26CHOL,KICH,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000130706ADRM15CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000181396OGFOD35CHOL,HNSC,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000181396OGFOD35CHOL,HNSC,LAML,LIHC,THCA
ENSG00000248275ENSG00000125817CENPBENSG00000131652THOC66CHOL,HNSC,LIHC,MESO,PCPG,PRAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000131652THOC65CHOL,LGG,LIHC,MESO,PRAD
ENSG00000248275ENSG00000167967E4F1ENSG00000131652THOC65CHOL,HNSC,LGG,LIHC,MESO
ENSG00000248275ENSG00000154832CXXC1ENSG00000163156SCNM16CHOL,KICH,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000163156SCNM15CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000168395ING55CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000168395ING55CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000196378ZNF34ENSG00000168395ING55CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000101940WDR136CESC,CHOL,HNSC,LAML,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000101940WDR135CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000105393BABAM15CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000105393BABAM15CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000173272MZT2A5CHOL,LGG,LIHC,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000173272MZT2A6CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000176476SGF296CHOL,HNSC,LAML,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000176476SGF295CHOL,KIRP,LGG,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000176476SGF296CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000165724ZMYND195CHOL,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000171984SHLD16CHOL,KICH,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000100416TRMU5CHOL,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000159377PSMB45CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000159377PSMB46CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000105072C19orf445CESC,HNSC,KIRP,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000105072C19orf445KICH,KIRP,PAAD,TGCT,THCA
ENSG00000248275ENSG00000196378ZNF34ENSG00000105072C19orf445BLCA,KICH,KIRP,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000169189NSMCE15CHOL,KICH,LGG,TGCT,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000124562SNRPC5CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000124562SNRPC5CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000127922SEM15CHOL,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000126768TIMM17B6CHOL,LGG,LIHC,PAAD,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000126768TIMM17B6CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000041988THAP39CHOL,DLBC,HNSC,KIRP,LAML,LIHC,PAAD,PRAD,THCA
ENSG00000248275ENSG00000125817CENPBENSG00000041988THAP37CESC,CHOL,HNSC,LIHC,MESO,PCPG,PRAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000041988THAP39CHOL,KICH,KIRP,LGG,LIHC,MESO,PAAD,PRAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000041988THAP37CHOL,HNSC,LAML,LGG,LIHC,MESO,THCA
ENSG00000248275ENSG00000125817CENPBENSG00000188186LAMTOR45ACC,CESC,CHOL,HNSC,LIHC
ENSG00000248275ENSG00000154832CXXC1ENSG00000188186LAMTOR46CHOL,KIRP,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000188186LAMTOR45CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000175334BANF15CHOL,KIRP,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000175334BANF15CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000112167SAYSD16CESC,CHOL,HNSC,PAAD,SKCM,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000174915PTDSS26CHOL,KIRP,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000158062UBXN117CHOL,ESCA,HNSC,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000158062UBXN116CHOL,KICH,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000123810B9D26CHOL,KICH,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000182173TSEN545CHOL,KICH,KIRP,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000070423RNF1265CHOL,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000104957CCDC1307CHOL,DLBC,HNSC,KICH,LAML,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000104957CCDC1305CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000104957CCDC1306CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000225663MCRIP16CHOL,DLBC,LAML,PAAD,STAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000225663MCRIP17CHOL,KICH,KIRP,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000225663MCRIP15CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000114779ABHD14B5BRCA,DLBC,HNSC,LAML,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000100106TRIOBP5BRCA,CHOL,DLBC,HNSC,KIRP
ENSG00000248275ENSG00000112511PHF1ENSG00000130714POMT15CHOL,HNSC,KIRP,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000130714POMT15CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000221983UBA525CHOL,LGG,LIHC,TGCT,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000213337ANKRD395CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000137161CNPY36CESC,CHOL,DLBC,HNSC,LAML,LIHC
ENSG00000248275ENSG00000167967E4F1ENSG00000132612VPS4A5CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000099821POLRMT5CHOL,KIRP,LAML,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000099821POLRMT6CHOL,KIRP,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000099821POLRMT6CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000204237OXLD17CHOL,KICH,KIRP,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000204237OXLD16CHOL,HNSC,LAML,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000163001CFAP365CESC,CHOL,HNSC,PAAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000130165ELOF15CHOL,DLBC,LAML,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000130165ELOF15CHOL,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000181817LSM105CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000145029NICN15CHOL,DLBC,HNSC,KIRP,PAAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000145029NICN15CHOL,KICH,KIRP,PAAD,THCA
ENSG00000248275ENSG00000196378ZNF34ENSG00000145029NICN17BLCA,CHOL,DLBC,KICH,KIRP,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000198917SPOUT15CHOL,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000111653ING48CHOL,DLBC,HNSC,KICH,LIHC,PAAD,STAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000111653ING46CHOL,KICH,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000146540C7orf505CHOL,KIRP,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000163870TPRA15CHOL,LGG,LIHC,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000163870TPRA15CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000027847B4GALT76CHOL,DLBC,HNSC,LIHC,PAAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000027847B4GALT75CHOL,LGG,LIHC,PAAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000027847B4GALT75CHOL,HNSC,LGG,LIHC,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000130748TMEM1605CHOL,KICH,LGG,LIHC,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000130748TMEM1605CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000110011DNAJC49CESC,CHOL,DLBC,ESCA,HNSC,KIRP,LAML,STAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000110011DNAJC45CHOL,KIRP,LGG,TGCT,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000110011DNAJC45CHOL,HNSC,LAML,LGG,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000132376INPP5K7BRCA,CHOL,DLBC,KICH,KIRP,LAML,PAAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000132376INPP5K5CHOL,KICH,KIRP,LGG,PAAD
ENSG00000248275ENSG00000154832CXXC1ENSG00000168028RPSA6CHOL,KIRP,LGG,LIHC,TGCT,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000118162KPTN5CHOL,KICH,LIHC,PAAD,THCA
ENSG00000248275ENSG00000125817CENPBENSG00000189306RRP7A5CESC,CHOL,LIHC,MESO,PCPG
ENSG00000248275ENSG00000154832CXXC1ENSG00000189306RRP7A5CHOL,LIHC,MESO,PRAD,THCA
ENSG00000248275ENSG00000196378ZNF34ENSG00000203778FAM229B5KICH,KIRP,PAAD,STAD,THCA
ENSG00000248275ENSG00000112511PHF1ENSG00000099622CIRBP11BRCA,CESC,CHOL,DLBC,HNSC,KIRP,LAML,PAAD,PRAD,STAD,THCA
ENSG00000248275ENSG00000154832CXXC1ENSG00000099622CIRBP6CHOL,KIRP,LGG,PAAD,PRAD,THCA
ENSG00000248275ENSG00000167967E4F1ENSG00000099622CIRBP5CHOL,HNSC,LAML,LGG,THCA

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000248275ENST00000507434KNOP1ENSG00000103550ENST00000219837-0.144088BRCA-
ENSG00000248275ENST00000433265ADAM17ENSG00000151694ENST00000310823-0.11291CESC-
ENSG00000248275ENST00000433265UBA6ENSG00000033178ENST00000420827-0.12191CESC-
ENSG00000248275ENST00000433265DIP2BENSG00000066084ENST00000546732-0.10061CESC-
ENSG00000248275ENST00000433265PALB2ENSG00000083093ENST00000261584-0.1323204CESC-
ENSG00000248275ENST00000433265PALB2ENSG00000083093ENST00000565038-0.126181CESC-
ENSG00000248275ENST00000433265KNOP1ENSG00000103550ENST00000219837-0.11731BRCA-
ENSG00000248275ENST00000514146EIF4G1ENSG00000114867ENST00000382330-0.29631CESC-
ENSG00000248275ENST00000514146EIF4G1ENSG00000114867ENST00000422614-0.13481CESC-
ENSG00000248275ENST00000514146MICAL2ENSG00000133816ENST00000256194-0.17231BRCA-
ENSG00000248275ENST00000514146MICAL2ENSG00000133816ENST00000527546-0.10831BRCA-
ENSG00000248275ENST00000514146MICAL2ENSG00000133816ENST00000537344-0.17231BRCA-
ENSG00000248275ENST00000514146MICAL2ENSG00000133816ENST00000342902-0.17231BRCA-
ENSG00000248275ENST00000514146QTRT2ENSG00000151576ENST00000479882-0.1755635CESC-
ENSG00000248275ENST00000514146QTRT2ENSG00000151576ENST00000493014-0.2065667CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000346169-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000352767-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000414031-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000392537-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000382330-0.27771CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000350481-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000342981-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000424196-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000434061-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000319274-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000435046-0.11311CESC-
ENSG00000248275ENST00000507434EIF4G1ENSG00000114867ENST00000422614-0.13291CESC-
ENSG00000248275ENST00000507434STX6ENSG00000135823ENST00000542060-0.13341CESC-
ENSG00000248275ENST00000507434STX6ENSG00000135823ENST00000258301-0.13341CESC-
ENSG00000248275ENST00000507434QTRT2ENSG00000151576ENST00000479882-0.2903165CESC-
ENSG00000248275ENST00000507434QTRT2ENSG00000151576ENST00000493014-0.4453192CESC-
ENSG00000248275ENST00000507434CDCP1ENSG00000163814ENST00000425231-0.1252110CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000346169-0.11261CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000352767-0.11261CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000414031-0.11261CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000392537-0.11261CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000382330-0.29631CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000350481-0.11261CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000342981-0.11261CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000424196-0.11261CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000434061-0.11261CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000319274-0.11661CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000435046-0.11261CESC-
ENSG00000248275ENST00000509252EIF4G1ENSG00000114867ENST00000422614-0.13481CESC-
ENSG00000248275ENST00000509252QTRT2ENSG00000151576ENST00000479882-0.1755361CESC-
ENSG00000248275ENST00000509252QTRT2ENSG00000151576ENST00000493014-0.2065393CESC-
ENSG00000248275ENST00000509252CDCP1ENSG00000163814ENST00000296129-0.10061CESC-
ENSG00000248275ENST00000433265SMC4ENSG00000113810ENST00000469762-0.36391CESC,BRCA-
ENSG00000248275ENST00000433265SMC4ENSG00000113810ENST00000462787-0.1011233CESC,BRCA-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000346169-0.10471CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000352767-0.10471CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000414031-0.10471CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000392537-0.10471CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000442406-0.10131CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000382330-0.17641CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000413967-0.10511CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000350481-0.10471CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000342981-0.10471CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000424196-0.10471CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000434061-0.10471CESC-
ENSG00000248275ENST00000433265EIF4G1ENSG00000114867ENST00000435046-0.10471CESC-
ENSG00000248275ENST00000433265STX6ENSG00000135823ENST00000542060-0.11041CESC-
ENSG00000248275ENST00000433265STX6ENSG00000135823ENST00000258301-0.11041CESC-
ENSG00000248275ENST00000433265QTRT2ENSG00000151576ENST00000485050-0.10571CESC-
ENSG00000248275ENST00000433265QTRT2ENSG00000151576ENST00000281273-0.10571CESC-
ENSG00000248275ENST00000433265QTRT2ENSG00000151576ENST00000479882-0.1755171CESC-
ENSG00000248275ENST00000433265QTRT2ENSG00000151576ENST00000493014-0.2065203CESC-
ENSG00000248275ENST00000433265CDCP1ENSG00000163814ENST00000296129-0.14051CESC-
ENSG00000248275ENST00000514146CAPN1ENSG00000014216ENST00000533129-0.14061CESC-
ENSG00000248275ENST00000514146CAPN1ENSG00000014216ENST00000526954-0.2047601CESC-
ENSG00000248275ENST00000514146MARK2ENSG00000072518ENST00000508192-0.46371CESC-
ENSG00000248275ENST00000514146MARK2ENSG00000072518ENST00000361128-0.116342CESC-
ENSG00000248275ENST00000514146MARK2ENSG00000072518ENST00000350490-0.116342CESC-
ENSG00000248275ENST00000514146MARK2ENSG00000072518ENST00000502399-0.116342CESC-
ENSG00000248275ENST00000514146MARK2ENSG00000072518ENST00000509502-0.46371CESC-
ENSG00000248275ENST00000514146MARK2ENSG00000072518ENST00000513765-0.116342CESC-
ENSG00000248275ENST00000514146MARK2ENSG00000072518ENST00000408948-1.271267CESC-
ENSG00000248275ENST00000514146NUP50ENSG00000093000ENST00000407019-0.21291CESC-
ENSG00000248275ENST00000514146NUP50ENSG00000093000ENST00000396096-0.21291CESC-
ENSG00000248275ENST00000514146TBC1D2ENSG00000095383ENST00000375064-0.13341CESC-
ENSG00000248275ENST00000514146ESRP2ENSG00000103067ENST00000566774-0.15981CESC,BRCA-
ENSG00000248275ENST00000507434CAPN1ENSG00000014216ENST00000526954-0.1504324CESC-
ENSG00000248275ENST00000507434MARK2ENSG00000072518ENST00000508192-0.50711CESC-
ENSG00000248275ENST00000507434MARK2ENSG00000072518ENST00000502399-0.103246CESC-
ENSG00000248275ENST00000507434MARK2ENSG00000072518ENST00000509502-0.50711CESC-
ENSG00000248275ENST00000507434MARK2ENSG00000072518ENST00000408948-1.271257CESC-
ENSG00000248275ENST00000507434NUP50ENSG00000093000ENST00000407019-0.21291CESC-
ENSG00000248275ENST00000507434NUP50ENSG00000093000ENST00000396096-0.21291CESC-
ENSG00000248275ENST00000507434TBC1D2ENSG00000095383ENST00000375064-0.16401CESC-
ENSG00000248275ENST00000509252CAPN1ENSG00000014216ENST00000526954-0.2047327CESC-
ENSG00000248275ENST00000509252MARK2ENSG00000072518ENST00000402010-0.12711CESC-
ENSG00000248275ENST00000509252MARK2ENSG00000072518ENST00000377810-0.12711CESC-
ENSG00000248275ENST00000509252MARK2ENSG00000072518ENST00000508192-0.50711CESC-
ENSG00000248275ENST00000509252MARK2ENSG00000072518ENST00000361128-0.102630CESC-
ENSG00000248275ENST00000509252MARK2ENSG00000072518ENST00000502399-0.100630CESC-
ENSG00000248275ENST00000509252MARK2ENSG00000072518ENST00000509502-0.50711CESC-
ENSG00000248275ENST00000509252MARK2ENSG00000072518ENST00000408948-1.271255CESC-
ENSG00000248275ENST00000509252NUP50ENSG00000093000ENST00000434760-0.10131CESC-
ENSG00000248275ENST00000509252TBC1D2ENSG00000095383ENST00000375064-0.13461CESC-
ENSG00000248275ENST00000509252ESRP2ENSG00000103067ENST00000566774-0.15981CESC,BRCA-
ENSG00000248275ENST00000433265CAPN1ENSG00000014216ENST00000526954-0.2047137CESC-
ENSG00000248275ENST00000433265MARK2ENSG00000072518ENST00000402010-0.14721CESC-
ENSG00000248275ENST00000433265MARK2ENSG00000072518ENST00000377810-0.14721CESC-
ENSG00000248275ENST00000433265MARK2ENSG00000072518ENST00000508192-0.107577CESC-
ENSG00000248275ENST00000433265MARK2ENSG00000072518ENST00000509502-0.14321CESC-
ENSG00000248275ENST00000433265MARK2ENSG00000072518ENST00000408948-0.6633115CESC-
ENSG00000248275ENST00000433265CPOXENSG00000080819ENST00000264193-0.16891CESC-
ENSG00000248275ENST00000433265CPOXENSG00000080819ENST00000513674-0.1005194CESC-
ENSG00000248275ENST00000433265NUP50ENSG00000093000ENST00000407019-0.10631CESC-
ENSG00000248275ENST00000433265NUP50ENSG00000093000ENST00000396096-0.10631CESC-
ENSG00000248275ENST00000433265UNC5BENSG00000107731ENST00000335350-0.11241CESC,BRCA-
ENSG00000248275ENST00000433265UNC5BENSG00000107731ENST00000373192-0.11241CESC,BRCA-
ENSG00000248275ENST00000514146TJP2ENSG00000119139ENST00000265384-0.12431CESC-
ENSG00000248275ENST00000514146NAA50ENSG00000121579ENST00000493900-0.144111CESC-
ENSG00000248275ENST00000514146TDGENSG00000139372ENST00000266775-0.152732CESC-
ENSG00000248275ENST00000514146TDGENSG00000139372ENST00000544861-0.152730CESC-
ENSG00000248275ENST00000514146NOCTENSG00000151014ENST00000280614-0.1001384CESC-
ENSG00000248275ENST00000514146NUP205ENSG00000155561ENST00000463247-0.1605627CESC-
ENSG00000248275ENST00000514146HSPA4LENSG00000164070ENST00000505726-0.2429235CESC-
ENSG00000248275ENST00000514146PIP4K2CENSG00000166908ENST00000550360-0.11571CESC-
ENSG00000248275ENST00000514146KCTD5ENSG00000167977ENST00000564195-1.8050189CESC,BRCA-
ENSG00000248275ENST00000514146FAM83BENSG00000168143ENST00000306858-0.6400354CESC-
ENSG00000248275ENST00000514146ATP2A2ENSG00000174437ENST00000553144-0.2485175CESC-
ENSG00000248275ENST00000507434TJP2ENSG00000119139ENST00000377259-0.1224254CESC-
ENSG00000248275ENST00000507434NAA50ENSG00000121579ENST00000493900-0.14411CESC-
ENSG00000248275ENST00000507434TDGENSG00000139372ENST00000266775-0.1784122CESC-
ENSG00000248275ENST00000507434TDGENSG00000139372ENST00000544861-0.1784120CESC-
ENSG00000248275ENST00000507434INCENPENSG00000149503ENST00000394818-0.11301CESC-
ENSG00000248275ENST00000507434INCENPENSG00000149503ENST00000278849-0.11301CESC-
ENSG00000248275ENST00000507434NOCTENSG00000151014ENST00000280614-0.13701CESC-
ENSG00000248275ENST00000507434NOCTENSG00000151014ENST00000630479-0.15071CESC-
ENSG00000248275ENST00000507434HSPA4LENSG00000164070ENST00000508776-0.1015344CESC-
ENSG00000248275ENST00000507434HSPA4LENSG00000164070ENST00000296464-0.15221CESC-
ENSG00000248275ENST00000507434HSPA4LENSG00000164070ENST00000505726-0.1380167CESC-
ENSG00000248275ENST00000507434ITGA2ENSG00000164171ENST00000296585-0.12591CESC-
ENSG00000248275ENST00000507434KCTD5ENSG00000167977ENST00000564195-0.3829221CESC,BRCA-
ENSG00000248275ENST00000507434FAM83BENSG00000168143ENST00000306858-0.6633620CESC-
ENSG00000248275ENST00000507434ATP2A2ENSG00000174437ENST00000553144-0.1749192CESC-
ENSG00000248275ENST00000507434ATRENSG00000175054ENST00000513291-0.12901CESC-
ENSG00000248275ENST00000509252NAA50ENSG00000121579ENST00000493900-0.25931CESC-
ENSG00000248275ENST00000509252NIBAN2ENSG00000136830ENST00000373314-0.10451CESC-
ENSG00000248275ENST00000509252NIBAN2ENSG00000136830ENST00000373312-0.10451CESC-
ENSG00000248275ENST00000509252TDGENSG00000139372ENST00000266775-0.152720CESC-
ENSG00000248275ENST00000509252TDGENSG00000139372ENST00000544861-0.152718CESC-
ENSG00000248275ENST00000509252NUP205ENSG00000155561ENST00000463247-0.1605353CESC-
ENSG00000248275ENST00000509252HSPA4LENSG00000164070ENST00000505726-0.2429223CESC-
ENSG00000248275ENST00000509252PIP4K2CENSG00000166908ENST00000550360-0.11571CESC-
ENSG00000248275ENST00000509252KCTD5ENSG00000167977ENST00000564195-1.8050177CESC,BRCA-
ENSG00000248275ENST00000509252FAM83BENSG00000168143ENST00000306858-0.6025191CESC-
ENSG00000248275ENST00000509252ATP2A2ENSG00000174437ENST00000548169-0.1044422CESC-
ENSG00000248275ENST00000509252ATP2A2ENSG00000174437ENST00000553144-0.2485163CESC-
ENSG00000248275ENST00000509252FAM83HENSG00000180921ENST00000388913-0.11831CESC,BRCA-
ENSG00000248275ENST00000433265TJP2ENSG00000119139ENST00000377259-0.1015137CESC-
ENSG00000248275ENST00000433265NIBAN2ENSG00000136830ENST00000373314-0.11971CESC-
ENSG00000248275ENST00000433265NIBAN2ENSG00000136830ENST00000373312-0.11971CESC-
ENSG00000248275ENST00000433265PARP9ENSG00000138496ENST00000462315-0.10691CESC,BRCA-
ENSG00000248275ENST00000433265INCENPENSG00000149503ENST00000394818-0.13481CESC-
ENSG00000248275ENST00000433265INCENPENSG00000149503ENST00000278849-0.13481CESC-
ENSG00000248275ENST00000433265NUP205ENSG00000155561ENST00000463247-0.1605163CESC-
ENSG00000248275ENST00000433265HSPA4LENSG00000164070ENST00000296464-0.11951CESC-
ENSG00000248275ENST00000433265HSPA4LENSG00000164070ENST00000505726-0.19151CESC-
ENSG00000248275ENST00000433265ITGA2ENSG00000164171ENST00000510722-0.10771CESC-
ENSG00000248275ENST00000433265KCTD5ENSG00000167977ENST00000301738-0.11551CESC,BRCA-
ENSG00000248275ENST00000433265KCTD5ENSG00000167977ENST00000564195-1.805010CESC,BRCA-
ENSG00000248275ENST00000433265FAM83BENSG00000168143ENST00000306858-0.602524CESC-
ENSG00000248275ENST00000433265ATP2A2ENSG00000174437ENST00000553144-0.24851CESC-
ENSG00000248275ENST00000433265ATRENSG00000175054ENST00000513291-0.12081CESC-
ENSG00000248275ENST00000433265FAM83HENSG00000180921ENST00000388913-0.14361CESC,BRCA-
ENSG00000248275ENST00000514146PKP3ENSG00000184363ENST00000331563-0.12123CESC,BRCA-
ENSG00000248275ENST00000514146PKP3ENSG00000184363ENST00000525642-0.185912CESC,BRCA-
ENSG00000248275ENST00000507434PKP3ENSG00000184363ENST00000331563-0.12621CESC,BRCA-
ENSG00000248275ENST00000507434PKP3ENSG00000184363ENST00000525642-0.18592CESC,BRCA-
ENSG00000248275ENST00000509252PKP3ENSG00000184363ENST00000331563-0.11761CESC,BRCA-
ENSG00000248275ENST00000509252PKP3ENSG00000184363ENST00000525642-0.17551CESC,BRCA-
ENSG00000248275ENST00000433265FAM83HENSG00000180921ENST00000395103-0.12021CESC,BRCA-
ENSG00000248275ENST00000433265PKP3ENSG00000184363ENST00000331563-0.12131CESC,BRCA-
ENSG00000248275ENST00000433265PKP3ENSG00000184363ENST00000525642-0.165426CESC,BRCA-

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types
ENSG00000248275TRIM52-AS1,hsa-mir-22,PPIHKICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,WDR33KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,POLR2DKICH,CHOL,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,ARL3KICH,CESC,CHOL,LGG,UCS
ENSG00000248275TRIM52-AS1,hsa-mir-22,DPH7CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SPATA6KICH,CESC,CHOL,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RXRBKICH,CESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,C1orf35KICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,CERS5KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,DAXXKICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ATAT1KICH,CESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,USP21KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,TADA2AKICH,CESC,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,FUZKICH,CESC,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,PRR14KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,C2orf68KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RBM8AKICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,C12orf76KICH,CESC,CHOL,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,NRF1KICH,CESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,VPS37DKICH,CESC,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RING1KICH,CESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,INAVAKICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,BRD2KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,STX10CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ILKAPKICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RETREG3KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,FAM117BKICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,BOLA1KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,PRCCKICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,UNKKICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RCE1KICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ZC3H10CESC,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,LSM2KICH,CHOL,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,SRSF3KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,EHMT2KICH,CESC,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ERCC3KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,PHC1KICH,CESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,H1-10KICH,CHOL,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,ISY1CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,EXOSC2KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RAD52KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,C17orf75KICH,CESC,CHOL,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,HEXIM2KICH,CESC,CHOL,LGG,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,VEZF1KICH,CESC,CHOL,LGG,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,POLR2HKICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,PAXBP1KICH,CESC,CHOL,LGG,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,CNNM3KICH,CESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ING5KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SAP30BPKICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,CEP131CESC,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,CLK2KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RPAINKICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ZNHIT3KICH,CESC,CHOL,LGG,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,MCM7CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,PRPF38AKICH,CESC,CHOL,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,LUC7L2KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,HEXDKICH,CESC,CHOL,LGG,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ANP32ACHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,MRPL53KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,MBTD1KICH,CESC,CHOL,LGG,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SENP3KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,GPANK1KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,PTMAKICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,KPNA5KICH,CESC,CHOL,LGG,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,NOP58KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,STMN1KICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SBK1KICH,CESC,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,TSEN54KICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ATXN7L2CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,CRTC2KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SF3A3KICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,NVLKICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RBMXKICH,CESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,H3-3BKICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,IQCCKICH,CESC,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,UTP6KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,FBXO46KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,MSL2KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SSR2KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RPS27AKICH,CHOL,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,RPS10KICH,CHOL,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,CCDC57KICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SNRPAKICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,VARS2KICH,CHOL,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,CXXC1KICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,COPS7BKICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,INTS11KICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,CHTF18CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SUGP1KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SUMO2KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,HNRNPUL2CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RGL2KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,MRPL43KICH,CESC,CHOL,LGG,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,USF1KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SVBPKICH,CESC,CHOL,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,C14orf93KICH,CESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,CDK5RAP3KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,POLLCESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,CHTOPKICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RBM14KICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,HINFPKICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,UBTFKICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,MKS1KICH,CESC,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,PCIF1KICH,CESC,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ABI2KICH,CESC,CHOL,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,DUSP28KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,DET1KICH,CESC,CHOL,LGG,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,ENDOVKICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,UBXN11KICH,CESC,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,BRD8KICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,IRF3KICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,WDR83KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,FANCGKICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RPS11KICH,CHOL,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,BUD13KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RBM22KICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,NHP2KICH,CHOL,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,PRR3KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,NUP85KICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,KDM5BKICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,MUTYHKICH,CESC,CHOL,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RNF5KICH,CESC,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,ING4KICH,CESC,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,C11orf49KICH,CESC,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,SRRTKICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,PMF1KICH,CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,NSMCE4AKICH,CESC,CHOL,LGG,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,MED19KICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,LMBR1LKICH,CHOL,LGG,UCS,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,CCAR2CHOL,LGG,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,NELFEKICH,CHOL,LGG,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,LSM5KICH,CHOL,UCS,THYM,KIRP
ENSG00000248275TRIM52-AS1,hsa-mir-22,RPS8KICH,CHOL,LGG,UCS,THYM
ENSG00000248275TRIM52-AS1,hsa-mir-22,CCHCR1KICH,CHOL,UCS,THYM,KIRP

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000248275.1ENST00000514146.115337498
ENSG00000248275.1ENST00000507434.1115458111
ENSG00000248275.1ENST00000509252.18122267
ENSG00000248275.1ENST00000433265.3101516211