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lncRNA: ENSG00000248049

Summary for UBA6-DT

Gene summary

Gene information	Ensembl ID	ENSG00000248049
	Gene symbol	UBA6-DT
	Gene name	UBA6 divergent transcript
	HGNC	49083
	Entrez ID	550112
	Gene type	antisense
	Synonyms	UBA6-DT\|UBA6-AS1\|04q13.2
	UniProtAcc

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Structure and expression level for UBA6-DT

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000248049	1.132132e+03	1.160800e+00	1.197668e-01	9.692162e+00	3.260000e-22	6.490000e-21	UP	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000248049	6.344669e-01	2.867088e-06	CHOL	3.378437e-05
ENSG00000248049	4.889081e-01	1.166268e-06	KICH	3.238472e-06

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lncRNA-Protein interaction for UBA6-DT

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000128908	INO80	73.04	95.7561	Q9ULG1	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000118058	KMT2A	64.98	97.5517	Q03164	TF,Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000110851	PRDM4	60.63	90.0679	Q9UKN5	TF,Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000185658	BRWD1	60.06	96.8211	Q9NSI6	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000101040	ZMYND8	57.71	94.1413	Q9ULU4	Epi	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000114982	KANSL3	52.33	92.3781	Q9P2N6	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000196781	TLE1	51.31	91.9931	Q04724	Epi	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000101126	ADNP	50.66	90.8712	Q9H2P0	TF,Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000134852	CLOCK	45.21	92.2647	O15516	TF,Epi	ChIP-seq
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000001497	LAS1L	45.18	92.9641	Q9Y4W2	Epi	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000196781	TLE1	39.95	90.1373	Q04724	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000141644	MBD1	20.32	90.632	Q9UIS9	TF,Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000111653	ING4	20.11	91.5543	Q9UNL4	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000139620	KANSL2	3.94	92.7036	Q9H9L4	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000112511	PHF1	3.73	90.603	O43189	TF,Epi	NA
ENSG00000248049	ENST00000511571	UBA6-AS1	ENSG00000128908	INO80	84.39	92.1024	Q9ULG1	Epi	NA
ENSG00000248049	ENST00000514109	UBA6-AS1	ENSG00000128908	INO80	62.09	92.3215	Q9ULG1	Epi	NA
ENSG00000248049	ENST00000514109	UBA6-AS1	ENSG00000185658	BRWD1	49.7	94.2331	Q9NSI6	Epi	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000112983	BRD8	83.79	91.8428	Q9H0E9	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000112983	BRD8	82.58	90.947	Q9H0E9	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000171681	ATF7IP	67.89	93.894	Q6VMQ6	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000145241	CENPC	63.8	93.5251	Q03188	Epi	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000153147	SMARCA5	56.01	92.1363	O60264	Epi	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000166266	CUL5	50.02	91.6173	Q93034	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000183495	EP400	42.82	95.7117	Q96L91	Epi	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000186532	SMYD4	38.19	92.9799	Q8IYR2	Epi	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000163104	SMARCAD1	34.91	91.78	Q9H4L7	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000178913	TAF7	32.52	91.6211	Q15545	Epi	ChIP-seq
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000183495	EP400	28.42	93.9698	Q96L91	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000171456	ASXL1	27.48	94.5101	Q8IXJ9	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000168395	ING5	18.8	91.6221	Q8WYH8	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000131263	RLIM	11.2	92.1831	Q9NVW2	Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000132275	RRP8	6.87	92.8943	O43159	Epi	NA
ENSG00000248049	ENST00000514109	UBA6-AS1	ENSG00000183495	EP400	36.3	94.9231	Q96L91	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000168152	THAP9	66.45	91.2458	Q9H5L6	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000118058	KMT2A	64.98	97.5019	Q03164	TF,Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000110851	PRDM4	60.63	90.021	Q9UKN5	TF,Epi	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000135164	DMTF1	54.22	90.1363	Q9Y222	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000099326	MZF1	52.85	90.0586	P28698	TF	ChIP-seq
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000101126	ADNP	50.66	90.7091	Q9H2P0	TF,Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000134852	CLOCK	45.21	92.1421	O15516	TF,Epi	ChIP-seq
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000196670	ZFP62	39.82	93.4077	Q8NB50	TF	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000236287	ZBED5	35.78	90.9599	Q49AG3	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000170448	NFXL1	35.28	92.6072	Q6ZNB6	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000198040	ZNF84	34.33	94.3147	P51523	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000065029	ZNF76	23.95	93.415	P36508	TF	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000170448	NFXL1	23.88	91.5953	Q6ZNB6	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000186272	ZNF17	23.79	92.2877	P17021	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000169981	ZNF35	22.07	92.7857	P13682	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000166526	ZNF3	21.0	91.6915	P17036	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000141644	MBD1	20.32	90.6242	Q9UIS9	TF,Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000062194	GPBP1	20.22	93.9164	Q86WP2	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000105708	ZNF14	18.45	92.7873	P17017	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000142065	ZFP14	18.06	92.4949	Q9HCL3	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000256223	ZNF10	17.02	91.141	P21506	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000180035	ZNF48	15.96	91.8825	Q96MX3	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000197857	ZNF44	15.04	95.0436	P15621	TF	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000166432	ZMAT1	14.53	91.5795	Q5H9K5	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000172466	ZNF24	14.0	91.2057	P17028	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000168661	ZNF30	12.43	92.9138	P17039	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000109381	ELF2	12.19	92.5483	Q15723	TF	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000221944	TIGD1	11.81	90.0523	Q96MW7	TF	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000256223	ZNF10	11.68	90.911	P21506	TF	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000135457	TFCP2	11.24	91.8846	Q12800	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000175691	ZNF77	8.32	92.0991	Q15935	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000196152	ZNF79	6.67	92.4895	Q15937	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000144161	ZC3H8	6.35	90.2914	Q8N5P1	TF,RBP	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000112511	PHF1	3.73	90.3956	O43189	TF,Epi	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000275111	ZNF2	3.57	91.0898	Q9BSG1	TF	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000085274	MYNN	2.54	90.6066	Q9NPC7	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000248049	ENST00000514109	UBA6-AS1	ENSG00000178105	DDX10	66.06	93.441	Q13206	RBP	NA
ENSG00000248049	ENST00000514109	UBA6-AS1	ENSG00000111364	DDX55	5.51	90.2702	Q8NHQ9	RBP	eCLIP
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000122965	RBM19	61.73	93.6095	Q9Y4C8	RBP	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000198000	NOL8	57.7	95.1657	Q76FK4	RBP	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000163728	TTC14	57.38	90.1559	Q96N46	RBP	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000106344	RBM28	55.61	94.8962	Q9NW13	RBP	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000122965	RBM19	54.01	93.1374	Q9Y4C8	RBP	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000064607	SUGP2	45.38	92.0736	Q8IX01	RBP	eCLIP
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000106344	RBM28	43.73	90.1597	Q9NW13	RBP	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000091009	RBM27	42.57	91.0083	Q9P2N5	RBP	eCLIP
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000100650	SRSF5	38.98	91.7488	Q13243	RBP	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000079134	THOC1	38.84	90.7914	Q96FV9	RBP	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000129317	PUS7L	34.94	92.8064	Q9H0K6	RBP	NA
ENSG00000248049	ENST00000500538	UBA6-AS1	ENSG00000129317	PUS7L	27.02	90.435	Q9H0K6	RBP	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000124193	SRSF6	26.61	92.2711	Q13247	RBP	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000140694	PARN	20.25	90.6268	O95453	RBP	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000182810	DDX28	18.45	90.279	Q9NUL7	RBP	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000150316	CWC15	16.12	91.2099	Q9P013	RBP	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000147274	RBMX	13.32	92.1219	P38159	RBP	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000138757	G3BP2	10.64	92.8426	Q9UN86	RBP	NA
ENSG00000248049	ENST00000506606	UBA6-AS1	ENSG00000111364	DDX55	9.81	91.1948	Q8NHQ9	RBP	eCLIP
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000144161	ZC3H8	6.35	90.3944	Q8N5P1	TF,RBP	NA
ENSG00000248049	ENST00000498917	UBA6-AS1	ENSG00000107164	FUBP3	2.81	91.8374	Q96I24	RBP	NA

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lncRNA-DNA interaction for UBA6-DT

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

ADH5,KRCC1,PEX2,HELQ,BOD1,TXNL1,CSNK1G3,MFSD8,MCRS1,BRD7,TXNL4B,FASTKD3,SCFD2,MZF1,CMC2,WDR83OS,CNOT9,CFAP20,PPID,CACFD1,SUGP2,N4BP2L2,BCS1L,TRUB2,DMTF1,RNF34,TMEM184C,FAM193A,OPA3,DCK,PIGG,ZNF24,FBXL17,HSDL1,FAM120AOS,PIGP,SLC25A12,VPS39,RPL26L1,GSTCD,HARS1,ZFP14,STK16,WDR5B,SMUG1,KLHL28,APTX,MSANTD2,FAM200A,OSER1,PPIL3,ABITRAM,COG6,STRBP,KBTBD3,TRIM5,POLR2K,MAEA,COMMD2,COA3,USP30,C9orf85,ZBED5,ARL1,RPAP1,ACTR6,TTC14,UFSP2,SLC2A11,HMGXB3,GKAP1,SPRN,FAM218A,PPIP5K2,STX18,NDUFB2,NIPA1,RNF167,SIAH1,EOLA2,FAM220A,OGT,BNIP1,WDR70,BRSK1,TARBP2,CLOCK,LYPLAL1,CEP89,FAN1,RIC8B,ANAPC10,BBIP1,CBY1,WDR83,ZBTB6,MRRF,GABPB1,RABL2A,C3orf18,DHPS,RPAIN,OFD1,ACYP1,TBCCD1,MTFMT,SLC25A29,MIS12,MRPS35,LMAN2L,NPAT,FANCF,NAPB,C4orf46,C3orf62,ZADH2,PRMT9,USP35,SYVN1,ZFP62,SOCS4,ALKBH2,PAIP1,ANAPC5,ZBED8,ORMDL1,YTHDC1,COQ7,C18orf21,C12orf73,NKAPD1,FUZ,ORC2,EMC7,GUF1,SBNO1,PPP6C,C1orf52,TFCP2,GTF2H1,TYW3,DHX35,MTMR2,MRPS27,UBE2O,MARVELD2,DCUN1D2,EIF2B1,ALG8,UQCC1,PAN2,C2orf76,LRTOMT,TIMM10B,SMARCAD1,ZNF14,SCRN3,FAM114A2,SLC25A39,TMEM126B,FITM2,CIR1,ZFC3H1,PDRG1,CLCN3,ELOF1,DNASE1,TNPO2,HDAC8,GAS8,CASP6,CCDC24,RINT1,MRPS25,KAT14,PALB2,ABCE1,TDRP,BUD13,CCDC34,ALKBH3,PGGT1B,ATF7IP,TMEM248,RCHY1,MARCHF6,ELP2,ISCA2,IQCC,ARHGEF9,RWDD4,ZNF30,OARD1,DPM1,RAB28,FAM172A,CEP20,TRMO,USP27X,FANCL,NUP54,TTC17,BRAP,MED7,SH2B1,NOA1,SMYD5,SNRNP25,PRR3,NICN1,CSNK1G1,CEP57,INPPL1,IP6K2,BET1L,METAP1,WDR53,YWHAE,PPWD1,RELCH,RBM27,ATG12,INO80C,FASTKD1,LAMTOR3,KIAA1191,ICE2,AGK,MRPL49,COX16,ENOPH1,TMED4,C20orf96,MOB1B,DDX55,HSCB,COG8,MIX23,HPF1,PGRMC2,FAM111A,ACYP2,EXD2,TMX2,THOC1,WDR59,CCDC59,UBA6,TRNT1,NUBP2,TMEM175,AIMP1,NUMA1,MRPL10,CLN5,DENND6A,ODR4,TAMM41,FIS1,SERPINI1,AP5M1,ZNF44,NECAB3,AP1AR,CDK20,TMEM116,TAF7,LTO1,GRPEL2,KANSL2,POLR3K,METAP1D,ANAPC13,TBCA,PABIR1,TCTA,DNAJB14,CWC15,ZCCHC9,PUS7L,MSH3,PPA2,DCTD,BBS2,IFT80,LAS1L,EP400,LIN54,RMND5B,ANKDD1A,EXD3,TSN,C17orf75,LRIG2,FBXO8,ABHD18,PCED1A,TUSC2,C4orf33,ELP5,SMYD4,PEX26,TARS3,LMF1,SEC31A,ACIN1,ZC3H8,METTL16,TMEM182,RAB17,RAB2B,ANKRD49,GATB,DNAJC19,PXMP4,GANC,TMEM186,CCDC125,FNTA,ZNF48,COA1,INPP5E,TOMM22,KATNB1,RSRP1,RAB33B,CETN3,TPGS2,TRAPPC13,UNC50,ATG14,PWWP2A,ZSWIM1,FIZ1,TRPT1,MYNN,METTL14,ATP13A1,NSUN2,MRPS9,ZNF720,UPF3B,LINS1,ROGDI,PAFAH1B2,TMEM199,MED29,ANKEF1,PYURF,CCDC127,C18orf32,NDUFAF5,GPBP1,MRE11,DIABLO,NDUFAF7,MFF,HMBS,FRG1,TRMT13,PISD,AKTIP,CCDC82,SREK1IP1,POP5,LRBA,LYRM7,ELP1,ACP1,GDI1,TTC37,MKKS,NSL1,EPM2AIP1,TTC12,TYW1,SCAMP1,LSM1,NAP1L4,WDR27,EME2,GTPBP8,PRKAG1,CCDC71,NAIF1,DDX41,PPCDC,HARS2,BSDC1,MESD,KHDC4,NCK1,PIGB,PPP1R26,HPS4,COPRS,DDX23,UNC119B,UBE3B,AMZ2,NCBP2,ZNF10,CUL4B,DET1,C11orf1,MED17,ALG2,ESCO1,KATNAL2,GRSF1,ATPSCKMT,POMT1,NAA15,STMP1,INTS12,POC5,FAM214A,MYSM1,YTHDF1,ARID2,UBTF,SEC24B,TTC5,DPY19L2,NAT14,KATNBL1,SRP72,MTIF3,CDK5RAP1,SPIN3,FOXRED1,TBRG1,PIGC,COX11,SLX4IP,COQ3,GTF3C3,GATAD1,PSMD10,DCAKD,EFCAB7,PPM1A,INCA1,GFM2,ZER1,CNOT4,N6AMT1,KANSL3,ALG5,B4GALT7,COQ4,RLIM,KYAT1,CHST14,CCNT2,COX18,NUP37,ALG14,NFRKB,TMEM192,BRWD1,LRRC23,TMEM223,CSTF3,TIGD6,TRAPPC11,ZBTB3,TUBGCP5,CCNH,CEBPZOS,SPATA2,ENDOV,BBS10,KLHL9,DPY30,SP4,MRPL50,BSG,SETD6,POLI,PTS,TTC30A,KIF21A,ELP6,CDC23,PRPF39,HDHD2,MRPL22,ATP8A1,KCTD1,TMEM41B,GEMIN6,PFDN1,TBL2,GOSR2,PARP3,PHF1,PABIR2,UTP3,APOO,PHAX,CMTR2,TMEM128,MRPS22,CEP44,CENPC,DBT,ATRAID,ANKS3,AAGAB,GON7,NEPRO,TLK1,ANKRD54,TMEM263,ANKRA2,ASB7,PARN,CCDC90B,VPS33A,POMT2,ORC5,RNF25,TMEM60,TMEM161B,RBM45,HSPBAP1,NFXL1,YAE1,FAM149B1,DENND1B,PSMG4,DDX31,TMEM87A,METTL6,HDHD5,WDR36,TIA1,SFXN4,ZNF3,SPCS3,MOCS2,ABCD4,MAD2L1,COQ2,CRCP,ERCC3,C19orf47,C19orf25,C4orf36,C3orf38,SMARCD1,ABHD10,G3BP2,DTX3,MTG2,RNF215,GIN1,TLE5,PARP8,NAT9,LIPT1,ELF2,NDUFA5,CRAMP1,LUC7L,EPS15L1,NUDCD2,WDR6,TMEM25,COA5,LUC7L2,BRD8,CASP3,XRN2,NIF3L1,ERCC8,C14orf93,COQ9,BBS4,LRSAM1,DPH7,TRA2A,TMX4,ZMYND8,MAPKAPK5,FUNDC2,POLR3F,KMT2A,HINFP,PHOSPHO2,XPA,PCBD2,SOS1,SPCS2,WBP1,PARP16,RAD17,CISD2,NOL8,ADAL,ZDHHC21,IMMP1L,SLC38A7,TIMM21,SRRT,ME3,AGAP6,RBM19,RFK,BET1,GEMIN8,MPHOSPH10,BOLA3,RBM39,C15orf61,TATDN3,MRPS26,SCFD1,ARMCX6,COPS7A,POT1,TMEM267,ITFG2,ZNF2,ICA1,PDS5A,HSBP1,KCTD6,AASDH,GBA2,KIAA0895L,ARV1,NDUFAF6,ZNF77,SAMD10,NDUFA4,RBM28,SPRYD7,PHYKPL,POFUT2,PDZD11,RUFY3,LIN37,B4GAT1,NUP42,MED28,LARP7,ZC3HC1,BUD31,PTCD2,EMC3,COPS5,ISCA1,DCAF16,GOLGA1,SIAE,PAQR3,QSOX2,UBE2D4,MED31,EXTL2,MINDY2,RICTOR,TM2D3,ARL6,OSGEPL1,G6PC3,PEX1,SCLT1,SPPL3,TUSC1,FAM217B,IMMP2L,FAM76B,ANAPC7,YAF2,TRIM23,RBMX,OAZ2,RBM4B,DTWD1,EXOG,TMEM99,PUS3,MRPS31,N4BP1,RBM14,ADNP,ORC4,NCOA5,MBD1,IKZF4,TEFM,SURF6,C12orf43,AAAS,GNPDA1,PRIMPOL,ABHD2,PRDM4,THAP9,SMPD4,CLNS1A,PLEKHJ1,MRNIP,POLR2B,MPV17,THAP6,SLC35B1,DYRK1B,ELMOD3,DHX15,FBXW2,TTLL1,GGPS1,CSTF1,TMEM129,C12orf66,ING4,MTRF1,RRP8,TLE1,MRPS33,BBS12,THYN1,LIAS,MRPS18C,SEC16A,TMEM165,INO80,FBXL12,GNPDA2,SDR39U1,NEK1,SLC25A17,IFT46,FAM216A,LRRC29,AUP1,C12orf76,RSPRY1,WDR61,TIGD1,FUNDC1,AP3S2,GPS2,TRIM52,NDUFC1,FAHD1,RBM18,SPIN2B,ATP6V1E2,LMBR1,NDUFA8,MTX3,TM2D1,ZMAT1,ATAD1,TMEM230,SPATA33,SS18,ALPK1,STRADA,NDUFB6,CBR4,USO1,DIDO1,CYP2R1,RABGAP1,PPHLN1,FKTN,SETD4,C1orf109,RBM48,UBE2D3,CCNI,AARSD1,DUSP28,DTD1,BCDIN3D,ZCCHC7,ZNF17,C3orf33,SDAD1,SLC30A9,ZNF84,PARP6,PDCD6,COPS8,UTP15,PTPRA,C17orf80,TRA2B,PRPF40B,PIAS2,CRIPT,KATNIP,ASXL1,TSC1,NAE1,USP20,ASB8,RABL2B,TRAPPC2,TRMT10A,MRFAP1L1

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for UBA6-DT

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

TKT,A2M,PLXND1,CRISPLD2,MYD88,MYADM

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000248049	ENST00000511571	exon_skip_85538	chr12:71894324-71894375	-8.15	-0.2629	TBC1D15	ENST00000550746	In-frame
ENSG00000248049	ENST00000514109	exon_skip_435063	chr5:66075023-66075230	-18.85	-0.1030	ERBIN	ENST00000284037	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000248049	ENST00000500538	exon_skip_141945	chr16:11730644-11730774	-15.68	-0.2010	TXNDC11	ENST00000356957	Frame-shift
ENSG00000248049	ENST00000511571	exon_skip_462144	chr6:125298713-125298816	-9.84	-0.1036	HDDC2	ENST00000398153	Frame-shift
ENSG00000248049	ENST00000511571	exon_skip_361485	chr21:29008239-29008307	-9.24	-0.1812	RWDD2B	ENST00000493196	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67701675-67701800	212.00	-95.20	116	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67701575-67701678	206.00	-84.71	111	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67702232-67702336	204.00	-90.10	108	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67702012-67702121	203.00	-98.53	114	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67701281-67701395	189.00	-101.98	108	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67702505-67702613	183.00	-91.80	111	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67701825-67701927	182.00	-90.35	94	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67701394-67701510	167.00	-93.78	116	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67702356-67702458	166.00	-89.80	106	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000498917	chr4:67702150-67702240	142.00	-91.56	104	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67702518-67702644	230.00	-96.24	126	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67701916-67702021	213.00	-93.22	110	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67701575-67701678	206.00	-84.71	111	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67701669-67701780	204.00	-100.30	109	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67703076-67703180	204.00	-90.10	108	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67702856-67702965	203.00	-98.53	114	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67702187-67702302	202.00	-84.99	103	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67702361-67702480	189.00	-91.46	115	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67703349-67703457	183.00	-91.80	111	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67702669-67702771	182.00	-90.35	94	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67701808-67701922	177.00	-93.69	101	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67701394-67701510	167.00	-93.78	116	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67703200-67703302	166.00	-89.80	106	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67702089-67702193	156.00	-90.23	97	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000506606	chr4:67702994-67703084	142.00	-91.56	104	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67703321-67703416	214.00	-90.08	106	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67701916-67702021	213.00	-93.22	110	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67701575-67701678	206.00	-84.71	111	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67701669-67701780	204.00	-100.30	109	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67704182-67704309	201.00	-94.10	122	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67702833-67702940	200.00	-84.42	108	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67702089-67702192	196.00	-85.20	97	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67704345-67704454	196.00	-87.83	111	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67703452-67703553	188.00	-87.87	107	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67703147-67703255	186.00	-78.91	109	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67703671-67703774	183.00	-80.73	110	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67702280-67702395	182.00	-96.79	113	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67702624-67702723	180.00	-79.20	108	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67702184-67702289	179.00	-79.86	108	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67703777-67703892	179.00	-84.17	109	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67703571-67703676	178.00	-80.26	109	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67701808-67701922	177.00	-93.69	101	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67702984-67703096	174.00	-83.76	113	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67702384-67702499	172.00	-73.77	104	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67704448-67704555	169.00	-95.61	110	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67701394-67701510	167.00	-93.78	116	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67704564-67704673	164.00	-73.64	109	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67703995-67704102	161.00	-84.11	93	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67702714-67702829	160.00	-80.48	112	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67703909-67704017	156.00	-81.99	113	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000500538	chr4:67702521-67702633	153.00	-81.91	113	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000514109	chr4:67702015-67702120	213.00	-93.22	110	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000514109	chr4:67701674-67701777	206.00	-84.71	111	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000514109	chr4:67701768-67701879	204.00	-100.30	109	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000514109	chr4:67701411-67701523	181.00	-85.00	110	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000514109	chr4:67701907-67702021	177.00	-93.69	101	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000514109	chr4:67701548-67701648	164.00	-85.31	105	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000502758	chr4:67732244-67732352	192.00	-80.73	110	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000502758	chr4:67732368-67732484	175.00	-87.48	100	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000502758	chr4:67732145-67732243	170.00	-81.48	100	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000502758	chr4:67732544-67732648	169.00	-77.87	110	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000499180	chr4:68063260-68063376	238.00	-95.49	115	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000499180	chr4:68063063-68063184	162.00	-80.24	122	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000499180	chr4:68063367-68063467	148.00	-79.54	102	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000511571	chr4:68063294-68063401	212.00	-89.62	114	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000511571	chr4:68063691-68063818	201.00	-94.10	122	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000511571	chr4:68063504-68063611	161.00	-84.11	93	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000511571	chr4:68063418-68063526	156.00	-81.99	113	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000511571	chr4:68063162-68063267	152.00	-76.40	97	NA
ENSG00000248049	hsa-mir-199a-2	ENST00000511571	chr4:68063084-68063184	141.00	-75.37	100	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67702006-67702123	214.00	-101.53	120	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67701400-67701516	205.00	-85.92	116	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67702476-67702597	202.00	-99.34	121	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67702127-67702244	195.00	-112.17	120	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67701515-67701634	179.00	-93.33	117	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67702294-67702406	179.00	-89.31	110	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67701631-67701742	176.00	-89.51	104	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67701771-67701876	175.00	-79.16	114	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67701891-67701991	172.00	-93.74	109	NA
ENSG00000248049	hsa-mir-199b	ENST00000498917	chr4:67701281-67701389	164.00	-100.64	107	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67702850-67702967	214.00	-101.53	120	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67701400-67701516	205.00	-85.92	116	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67703320-67703441	202.00	-99.34	121	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67701867-67701975	199.00	-86.54	105	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67702287-67702403	195.00	-94.79	107	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67702971-67703088	195.00	-112.17	120	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67701708-67701831	188.00	-101.75	123	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67701515-67701634	179.00	-93.33	117	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67703138-67703250	179.00	-89.31	110	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67702181-67702290	178.00	-81.81	104	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67702422-67702535	177.00	-84.87	111	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67702615-67702720	175.00	-79.16	114	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67702735-67702835	172.00	-93.74	109	NA
ENSG00000248049	hsa-mir-199b	ENST00000506606	chr4:67702024-67702128	168.00	-97.25	108	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67701400-67701516	205.00	-85.92	116	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67703124-67703245	201.00	-81.96	117	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67704204-67704312	201.00	-88.40	109	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67701867-67701975	199.00	-86.54	105	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67703340-67703443	196.00	-85.76	107	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67702455-67702567	195.00	-82.89	107	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67702969-67703094	195.00	-85.72	117	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67703567-67703665	194.00	-78.36	107	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67702089-67702195	190.00	-93.81	110	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67703813-67703922	189.00	-81.61	111	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67701708-67701831	188.00	-101.75	123	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67704375-67704481	187.00	-77.77	103	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67704049-67704159	183.00	-80.05	105	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67701515-67701634	179.00	-93.33	117	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67702825-67702941	175.00	-90.61	120	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67704517-67704641	175.00	-77.95	119	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67702288-67702389	174.00	-94.47	101	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67702186-67702290	161.00	-80.75	100	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67703667-67703765	147.00	-75.94	105	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67703453-67703567	146.00	-84.10	110	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67702684-67702794	145.00	-78.06	108	NA
ENSG00000248049	hsa-mir-199b	ENST00000500538	chr4:67703943-67704048	141.00	-84.63	104	NA
ENSG00000248049	hsa-mir-199b	ENST00000514109	chr4:67701966-67702074	199.00	-86.54	105	NA
ENSG00000248049	hsa-mir-199b	ENST00000514109	chr4:67701502-67701615	193.00	-90.03	114	NA
ENSG00000248049	hsa-mir-199b	ENST00000514109	chr4:67701807-67701930	188.00	-101.75	123	NA
ENSG00000248049	hsa-mir-199b	ENST00000514109	chr4:67701614-67701733	179.00	-93.33	117	NA
ENSG00000248049	hsa-mir-199b	ENST00000514109	chr4:67701400-67701508	152.00	-83.03	113	NA
ENSG00000248049	hsa-mir-199b	ENST00000502758	chr4:67732271-67732367	203.00	-77.21	103	NA
ENSG00000248049	hsa-mir-199b	ENST00000502758	chr4:67732145-67732241	188.00	-74.46	103	NA
ENSG00000248049	hsa-mir-199b	ENST00000502758	chr4:67732568-67732688	167.00	-91.39	118	NA
ENSG00000248049	hsa-mir-199b	ENST00000502758	chr4:67732452-67732569	148.00	-84.62	112	NA
ENSG00000248049	hsa-mir-199b	ENST00000499180	chr4:68063270-68063381	202.00	-86.45	111	NA
ENSG00000248049	hsa-mir-199b	ENST00000499180	chr4:68063084-68063203	152.00	-82.17	121	NA
ENSG00000248049	hsa-mir-199b	ENST00000511571	chr4:68063261-68063387	207.00	-91.77	116	NA
ENSG00000248049	hsa-mir-199b	ENST00000511571	chr4:68063713-68063821	201.00	-88.40	109	NA
ENSG00000248049	hsa-mir-199b	ENST00000511571	chr4:68063558-68063668	183.00	-80.05	105	NA
ENSG00000248049	hsa-mir-199b	ENST00000511571	chr4:68063410-68063517	168.00	-83.20	112	NA
ENSG00000248049	hsa-mir-199b	ENST00000511571	chr4:68063084-68063203	152.00	-82.17	121	NA

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Variants for UBA6-DT

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000248049	ENSG00000018189	RUFY3	ACC,BRCA,ESCA,KICH,KIRC,KIRP,LUAD,LUSC,OV,PAAD,PCPG,TGCT,UCS,UVM	KICH
ENSG00000248049	ENSG00000027847	B4GALT7	ACC,CHOL,KICH,PAAD,THCA	KICH
ENSG00000248049	ENSG00000033178	UBA6	ACC,BLCA,BRCA,CHOL,DLBC,ESCA,HNSC,KICH,LAML,LGG,LUAD,LUSC,MESO,OV,PCPG,SARC,TGCT,UCS,UVM	KICH
ENSG00000248049	ENSG00000100099	HPS4	ACC,CHOL,DLBC,KICH,LAML,UVM	KICH
ENSG00000248049	ENSG00000100614	PPM1A	ACC,KICH,PAAD,PCPG,UVM	KICH
ENSG00000248049	ENSG00000101417	PXMP4	ACC,KICH,PAAD,THCA,UVM	KICH
ENSG00000248049	ENSG00000103932	RPAP1	ACC,DLBC,KICH,LAML,PAAD	KICH
ENSG00000248049	ENSG00000123415	SMUG1	ACC,CHOL,GBM,KICH,KIRC,LGG,LUSC,MESO,PRAD,TGCT,THCA	KICH
ENSG00000248049	ENSG00000124406	ATP8A1	ACC,KICH,PAAD,PCPG,UVM	KICH
ENSG00000248049	ENSG00000125827	TMX4	ACC,KICH,PAAD,PCPG,UVM	KICH
ENSG00000248049	ENSG00000128923	MINDY2	ACC,KICH,PCPG,UCS,UVM	KICH
ENSG00000248049	ENSG00000135002	RFK	ACC,GBM,KICH,UCS,UVM	KICH
ENSG00000248049	ENSG00000140526	ABHD2	ACC,KICH,PRAD,UCS,UVM	KICH
ENSG00000248049	ENSG00000145743	FBXL17	ACC,KICH,PAAD,PCPG,UVM	KICH
ENSG00000248049	ENSG00000157259	GATAD1	ACC,CHOL,DLBC,KICH,PAAD,THCA,THYM,UCS,UVM	KICH
ENSG00000248049	ENSG00000157837	SPPL3	ACC,CHOL,KICH,LGG,PAAD,THCA	KICH
ENSG00000248049	ENSG00000163257	DCAF16	ACC,BRCA,CHOL,DLBC,KICH,KIRP,LAML,LGG,LUAD,PAAD,TGCT,THYM,UCS	KICH
ENSG00000248049	ENSG00000164040	PGRMC2	ACC,DLBC,KICH,KIRP,PAAD,SARC,TGCT,THYM	KICH
ENSG00000248049	ENSG00000164180	TMEM161B	ACC,CHOL,DLBC,KICH,LUAD,PCPG,UCS	KICH
ENSG00000248049	ENSG00000164284	GRPEL2	ACC,CHOL,DLBC,KICH,KIRP,LGG,THCA	KICH
ENSG00000248049	ENSG00000165209	STRBP	ACC,CHOL,KICH,LAML,PAAD,UCS,UVM	KICH
ENSG00000248049	ENSG00000170113	NIPA1	ACC,CHOL,KICH,PCPG,UCS,UVM	KICH
ENSG00000248049	ENSG00000173085	COQ2	ACC,KICH,LGG,LUAD,UVM	KICH
ENSG00000248049	ENSG00000178397	FAM220A	ACC,CHOL,ESCA,KICH,STAD,THCA	KICH
ENSG00000248049	ENSG00000180304	OAZ2	ACC,CHOL,KICH,PAAD,THCA,THYM	KICH
ENSG00000248049	ENSG00000198270	TMEM116	ACC,BRCA,CHOL,GBM,KICH,KIRC,KIRP,LGG,MESO,THCA	KICH
ENSG00000248049	ENSG00000015153	YAF2	CHOL,DLBC,GBM,KICH,LUAD,PCPG	KICH
ENSG00000248049	ENSG00000088356	PDRG1	CHOL,GBM,KICH,PAAD,THCA,UVM	KICH
ENSG00000248049	ENSG00000088682	COQ9	CHOL,KICH,KIRC,KIRP,LAML,MESO,THCA,UCS	KICH
ENSG00000248049	ENSG00000103227	LMF1	CHOL,KICH,KIRC,LAML,THCA	KICH
ENSG00000248049	ENSG00000104964	TLE5	CHOL,KICH,KIRC,PAAD,TGCT	KICH
ENSG00000248049	ENSG00000109881	CCDC34	CHOL,KICH,KIRC,KIRP,TGCT	KICH
ENSG00000248049	ENSG00000119421	NDUFA8	CHOL,GBM,KICH,KIRC,KIRP,PAAD,THCA	KICH
ENSG00000248049	ENSG00000119559	C19orf25	CHOL,GBM,KICH,KIRC,PAAD,PCPG,THCA	KICH
ENSG00000248049	ENSG00000125863	MKKS	CHOL,GBM,KICH,KIRC,KIRP,LAML,PAAD,PCPG,THCA,UVM	KICH
ENSG00000248049	ENSG00000127527	EPS15L1	CHOL,DLBC,KICH,LAML,PAAD,PCPG,THCA	KICH
ENSG00000248049	ENSG00000131368	MRPS25	CHOL,KICH,KIRC,LAML,TGCT	KICH
ENSG00000248049	ENSG00000141428	C18orf21	CHOL,KICH,KIRC,KIRP,LGG,THCA	KICH
ENSG00000248049	ENSG00000160392	C19orf47	CHOL,DLBC,ESCA,KICH,THCA	KICH
ENSG00000248049	ENSG00000164327	RICTOR	CHOL,DLBC,KICH,PCPG,UVM	KICH
ENSG00000248049	ENSG00000165458	INPPL1	CHOL,DLBC,KICH,TGCT,THCA	KICH
ENSG00000248049	ENSG00000168569	TMEM223	CHOL,GBM,HNSC,KICH,KIRC,KIRP,SARC,THCA	KICH
ENSG00000248049	ENSG00000172270	BSG	CHOL,KICH,KIRC,PAAD,THYM	KICH
ENSG00000248049	ENSG00000178188	SH2B1	CHOL,DLBC,KICH,PAAD,PCPG,THCA	KICH
ENSG00000248049	ENSG00000184831	APOO	CHOL,KICH,KIRC,PAAD,PCPG	KICH
ENSG00000248049	ENSG00000186532	SMYD4	CHOL,DLBC,KICH,LAML,LGG,UCS	KICH
ENSG00000248049	ENSG00000189043	NDUFA4	CHOL,GBM,KICH,KIRC,UVM	KICH
ENSG00000248049	ENSG00000189227	C15orf61	CHOL,KICH,KIRC,PAAD,THCA	KICH
ENSG00000248049	ENSG00000197296	FITM2	CHOL,DLBC,KICH,PAAD,UVM	KICH
ENSG00000248049	ENSG00000198680	TUSC1	CHOL,ESCA,KICH,THCA,THYM	KICH
ENSG00000248049	ENSG00000139116	KIF21A	DLBC,KICH,KIRC,PAAD,PCPG	KICH
ENSG00000248049	ENSG00000162298	SYVN1	DLBC,KICH,PAAD,THCA,UVM	KICH
ENSG00000248049	ENSG00000196781	TLE1	DLBC,KICH,SARC,THCA,UVM	KICH
ENSG00000248049	ENSG00000132423	COQ3	GBM,KICH,KIRC,PAAD,THCA,UVM	KICH
ENSG00000248049	ENSG00000172301	COPRS	GBM,KICH,KIRC,PAAD,TGCT	KICH
ENSG00000248049	ENSG00000003147	ICA1	KICH,SARC,THYM,UCEC,UVM	KICH
ENSG00000248049	ENSG00000088543	C3orf18	KICH,KIRC,LAML,PAAD,PCPG,TGCT,THCA	KICH
ENSG00000248049	ENSG00000125967	NECAB3	KICH,KIRC,PAAD,TGCT,THCA	KICH
ENSG00000248049	ENSG00000163536	SERPINI1	KICH,PAAD,TGCT,THCA,THYM	KICH
ENSG00000248049	ENSG00000167216	KATNAL2	KICH,KIRC,PCPG,THCA,THYM	KICH
ENSG00000248049	ENSG00000177990	DPY19L2	KICH,LAML,THCA,THYM,UCS	KICH

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000248049	ENST00000498917	A2M	ENSG00000175899	ENST00000318602	-0.1061	1298	-	KICH
ENSG00000248049	ENST00000498917	CRISPLD2	ENSG00000103196	ENST00000564567	-0.1003	673	-	KICH
ENSG00000248049	ENST00000506606	A2M	ENSG00000175899	ENST00000318602	-0.1061	2089	-	KICH
ENSG00000248049	ENST00000506606	MYD88	ENSG00000172936	ENST00000424893	-0.1037	68	-	KICH
ENSG00000248049	ENST00000506606	CRISPLD2	ENSG00000103196	ENST00000564567	-0.1155	297	-	KICH
ENSG00000248049	ENST00000506606	CRISPLD2	ENSG00000103196	ENST00000569090	-0.1049	281	-	KICH
ENSG00000248049	ENST00000506606	MYADM	ENSG00000179820	ENST00000391768	-0.1524	665	-	KICH
ENSG00000248049	ENST00000500538	A2M	ENSG00000175899	ENST00000318602	-0.1637	901	-	KICH
ENSG00000248049	ENST00000500538	MYD88	ENSG00000172936	ENST00000424893	-0.1037	40	-	KICH
ENSG00000248049	ENST00000500538	CRISPLD2	ENSG00000103196	ENST00000564567	-0.1155	269	-	KICH
ENSG00000248049	ENST00000500538	CRISPLD2	ENSG00000103196	ENST00000569090	-0.1049	253	-	KICH
ENSG00000248049	ENST00000500538	MYADM	ENSG00000179820	ENST00000391768	-0.1396	637	-	KICH
ENSG00000248049	ENST00000514109	A2M	ENSG00000175899	ENST00000318602	-0.1274	195	-	KICH
ENSG00000248049	ENST00000514109	CRISPLD2	ENSG00000103196	ENST00000564567	-0.1155	334	-	KICH
ENSG00000248049	ENST00000514109	CRISPLD2	ENSG00000103196	ENST00000569090	-0.1049	318	-	KICH
ENSG00000248049	ENST00000514109	MYADM	ENSG00000179820	ENST00000391768	-0.1360	415	-	KICH
ENSG00000248049	ENST00000502758	CRISPLD2	ENSG00000103196	ENST00000564567	-0.1065	279	-	KICH
ENSG00000248049	ENST00000502758	MYADM	ENSG00000179820	ENST00000391768	-0.1182	338	-	KICH
ENSG00000248049	ENST00000499180	A2M	ENSG00000175899	ENST00000318602	-0.1075	1	-	KICH
ENSG00000248049	ENST00000499180	CRISPLD2	ENSG00000103196	ENST00000564567	-0.1930	167	-	KICH
ENSG00000248049	ENST00000499180	MYADM	ENSG00000179820	ENST00000391768	-0.1415	133	-	KICH

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000248049.5	ENST00000498917.2	124	1626	2000
ENSG00000248049.5	ENST00000506606.1	115	925	578
ENSG00000248049.5	ENST00000500538.5	153	459	1
ENSG00000248049.5	ENST00000514109.1	170	2412	1900
ENSG00000248049.5	ENST00000502758.1	134	496	92
ENSG00000248049.5	ENST00000499180.2	54	26	190
ENSG00000248049.5	ENST00000511571.1	41	122	0

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential